MELO3C019476.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C019476.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionOxoglutarate/iron-dependent dioxygenase
Locationchr06 : 11434593 .. 11435169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGAGCTTTCGATGCCGGAGTATGTTGAACACAGTCGGAGACTCCTCGTAATGAAGAATCCTGATAGCTTATTGGAGGTATTATCGGAAGGCTTTTTGTGGTAAATGCCGTTTTCTTCTTCAGCAACGTCTTCGACTCCTCATTCCTACAGCTATGGACTCCTTTGGTACTTCATTCATAGCATATTGATTTGTGAAAGATAAGAACTTTGAGTGATAGTTGTAAAAGCTTTCGAGGTTTGGTGTCCTGATATTGTTAGTTTTCGGTCAAGTTAAAGTCCTTTGAAATTTTGTCGTTTCCTTCTTCTTCTTTTTTTCTGAATCTCATTTTACTTCTCTGCAGAAAGTCACAACCACAATTCAGAAATCTATCATTCTGCAACTGAGGAGAACAAGAAGAGGAATGGGGATTTCTAATAATTCAGATTCAATATTGGATTATGGGATGGAAAAATTAAGATCTTCCAAAGTGAGGAAGGAGGAATTTGTTCATTTGGAAAAGATAGATGGAAAACTGAAAAATGTTGTTCAAGGGCTAGAGATTCACGCAGGAGTTCTTAACGACGAATAG

mRNA sequence

ATGGCCGCCGAGCTTTCGATGCCGGAGTATGTTGAACACAGTCGGAGACTCCTCGTAATGAAGAATCCTGATAGCTTATTGGAGAAAGTCACAACCACAATTCAGAAATCTATCATTCTGCAACTGAGGAGAACAAGAAGAGGAATGGGGATTTCTAATAATTCAGATTCAATATTGGATTATGGGATGGAAAAATTAAGATCTTCCAAAGTGAGGAAGGAGGAATTTGTTCATTTGGAAAAGATAGATGGAAAACTGAAAAATGTTGTTCAAGGGCTAGAGATTCACGCAGGAGTTCTTAACGACGAATAG

Coding sequence (CDS)

ATGGCCGCCGAGCTTTCGATGCCGGAGTATGTTGAACACAGTCGGAGACTCCTCGTAATGAAGAATCCTGATAGCTTATTGGAGAAAGTCACAACCACAATTCAGAAATCTATCATTCTGCAACTGAGGAGAACAAGAAGAGGAATGGGGATTTCTAATAATTCAGATTCAATATTGGATTATGGGATGGAAAAATTAAGATCTTCCAAAGTGAGGAAGGAGGAATTTGTTCATTTGGAAAAGATAGATGGAAAACTGAAAAATGTTGTTCAAGGGCTAGAGATTCACGCAGGAGTTCTTAACGACGAATAG

Protein sequence

MAAELSMPEYVEHSRRLLVMKNPDSLLEKVTTTIQKSIILQLRRTRRGMGISNNSDSILDYGMEKLRSSKVRKEEFVHLEKIDGKLKNVVQGLEIHAGVLNDE
Homology
[Close]
BLAST of MELO3C019476.2 vs. NCBI nr
Match: XP_022149186.1 (RNA demethylase ALKBH5-like [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 26/54 (48.15%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 50  GISNNSDSILDYGMEKLRSSKVRKEEFVHLEKIDGKLKNVVQGLEIHAGVLNDE 104
           G+S+  D + +   EK+R + VRK+EFVH E+IDGK+ N+++GLE+H+GV + E
Sbjct: 183 GVSSGED-LYEEQKEKIRFANVRKQEFVHRERIDGKVTNILEGLELHSGVFDKE 235

[Close]
BLAST of MELO3C019476.2 vs. NCBI nr
Match: CBI23813.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-04
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 50  GISNNSDSILDYGM-----EKLRSSKV-RKEEFVHLEKIDGKLKNVVQGLEIHAGVLNDE 104
           G+  NS S++D G+     E++R S++ RK++FVH+E+IDG+  NV+QGLE+H  V N E
Sbjct: 113 GLGGNS-SVIDTGLSEEEKEQIRLSQIGRKKDFVHIERIDGRTMNVIQGLELHTRVFNSE 171

[Close]
BLAST of MELO3C019476.2 vs. NCBI nr
Match: XP_002270229.1 (PREDICTED: RNA demethylase ALKBH5 [Vitis vinifera])

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-04
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 50  GISNNSDSILDYGM-----EKLRSSKV-RKEEFVHLEKIDGKLKNVVQGLEIHAGVLNDE 104
           G+  NS S++D G+     E++R S++ RK++FVH+E+IDG+  NV+QGLE+H  V N E
Sbjct: 131 GLGGNS-SVIDTGLSEEEKEQIRLSQIGRKKDFVHIERIDGRTMNVIQGLELHTRVFNSE 189

[Close]
BLAST of MELO3C019476.2 vs. TrEMBL
Match: tr|F6H8X7|F6H8X7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01810 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.2e-04
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 50  GISNNSDSILDYGM-----EKLRSSKV-RKEEFVHLEKIDGKLKNVVQGLEIHAGVLNDE 104
           G+  NS S++D G+     E++R S++ RK++FVH+E+IDG+  NV+QGLE+H  V N E
Sbjct: 131 GLGGNS-SVIDTGLSEEEKEQIRLSQIGRKKDFVHIERIDGRTMNVIQGLELHTRVFNSE 189

The following BLAST results are available for this feature:
BLAST of MELO3C019476.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149186.13.4e-0548.15RNA demethylase ALKBH5-like [Momordica charantia][more]
CBI23813.34.9e-0446.67unnamed protein product, partial [Vitis vinifera][more]
XP_002270229.14.9e-0446.67PREDICTED: RNA demethylase ALKBH5 [Vitis vinifera][more]
BLAST of MELO3C019476.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C019476.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C019476.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|F6H8X7|F6H8X7_VITVI3.2e-0446.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01810 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0051213 dioxygenase activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019476.2.1MELO3C019476.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019476.2Cucumber (Chinese Long) v3cucmedB240
MELO3C019476.2Cucumber (Chinese Long) v3cucmedB246
MELO3C019476.2Watermelon (97103) v2medwmbB424
MELO3C019476.2Wax gourdmedwgoB531
MELO3C019476.2Cucumber (Gy14) v2cgybmedB210
MELO3C019476.2Cucumber (Gy14) v2cgybmedB215
MELO3C019476.2Cucumber (Gy14) v1cgymedB002
MELO3C019476.2Cucumber (Gy14) v1cgymedB026
MELO3C019476.2Cucurbita maxima (Rimu)cmamedB346
MELO3C019476.2Cucurbita maxima (Rimu)cmamedB777
MELO3C019476.2Cucurbita moschata (Rifu)cmomedB332
MELO3C019476.2Cucurbita moschata (Rifu)cmomedB774
MELO3C019476.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C019476.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C019476.2Wild cucumber (PI 183967)cpimedB233
MELO3C019476.2Wild cucumber (PI 183967)cpimedB239
MELO3C019476.2Cucumber (Chinese Long) v2cumedB232
MELO3C019476.2Cucumber (Chinese Long) v2cumedB238
MELO3C019476.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C019476.2Watermelon (Charleston Gray)medwcgB417
MELO3C019476.2Watermelon (97103) v1medwmB448
MELO3C019476.2Silver-seed gourdcarmedB0064
MELO3C019476.2Silver-seed gourdcarmedB0661