MELO3C019472.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019472.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	pre-mRNA-splicing factor SPF27 homolog
Location	chr06 : 11315428 .. 11315703 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

mRNA sequence

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

Coding sequence (CDS)

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

Protein sequence

MMLIVIRMQKLAQEQNEKIEKVNRERKFHQVNSIPVIRTTVVDRPINIPKFNLILQVEAEHKEEEESEEGYEQESGDEYDDQGDKPRVCIK

Homology

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BLAST of MELO3C019472.2 vs. TAIR10
Match: AT3G18165.1 (modifier of snc1,4)

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 3   LIVIRMQKLAQEQNEKIEKVNRERKFHQ 31
           + + RMQ+LAQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

[Close]

BLAST of MELO3C019472.2 vs. Swiss-Prot
Match: sp|Q949S9|SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.5e-04
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 3   LIVIRMQKLAQEQNEKIEKVNRERKFHQ 31
           + + RMQ+LAQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

The following BLAST results are available for this feature:

BLAST of MELO3C019472.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C019472.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18165.1	4.7e-05	75.00	modifier of snc1,4	[more]

BLAST of MELO3C019472.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q949S9\|SPF27_ARATH	8.5e-04	75.00	Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P...	[more]

BLAST of MELO3C019472.2 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019472.2.1	MELO3C019472.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..32
None	No IPR available	COILS	Coil	Coil	coord: 54..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019472.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C019472.2	Cucumber (Gy14) v1	cgymedB002
MELO3C019472.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C019472.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C019472.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C019472.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C019472.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C019472.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C019472.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C019472.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C019472.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C019472.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C019472.2	Watermelon (97103) v1	medwmB448
MELO3C019472.2	Silver-seed gourd	carmedB0064
MELO3C019472.2	Silver-seed gourd	carmedB0661
MELO3C019472.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C019472.2	Watermelon (97103) v2	medwmbB424
MELO3C019472.2	Wax gourd	medwgoB531