MELO3C019472 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019472
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit alpha
Location	chr6 : 10238645 .. 10238920 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

mRNA sequence

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

Coding sequence (CDS)

ATGATGTTGATTGTTATCAGAATGCAAAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAATCGTGAAAGAAAATTTCATCAAGTAAATAGCATCCCCGTAATTCGTACTACAGTGGTAGATAGGCCAATTAACATCCCTAAATTTAATCTAATATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAGGAAGGATATGAACAAGAATCTGGGGATGAATATGATGATCAGGGAGATAAACCTAGAGTTTGTATTAAGTGA

Protein sequence

MMLIVIRMQKLAQEQNEKIEKVNRERKFHQVNSIPVIRTTVVDRPINIPKFNLILQVEAEHKEEEESEEGYEQESGDEYDDQGDKPRVCIK*

Homology

[Close]

BLAST of MELO3C019472 vs. TrEMBL
Match: A0A0A0KHS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518250 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 56 QVEAEHKEEEESEEGYEQESGDEYDDQGDKPR 88
          QVEAEHKEEE+SEEG EQESGDE DDQGDKPR
Sbjct: 35 QVEAEHKEEEDSEEGSEQESGDESDDQGDKPR 66

[Close]

BLAST of MELO3C019472 vs. TAIR10
Match: AT3G18165.1 (AT3G18165.1 modifier of snc1,4)

HSP 1 Score: 50.4 bits (119), Expect = 6.7e-07
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 3   LIVIRMQKLAQEQNEKIEKVNRERKFHQ------VNSIPVIRTTVVDRPINIPKFNLILQ 62
           + + RMQ+LAQEQNE+IEKVNRERK+HQ      +N++      +  + + I     +L+
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLE 223

Query: 63  VEAEHKEEEESEEGYEQE 75
            + +  ++E +E G+  E
Sbjct: 224 TQIDSFKKEAAERGWNLE 241

[Close]

BLAST of MELO3C019472 vs. NCBI nr
Match: gi|659078569|ref|XP_008439793.1| (PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 56 QVEAEHKEEEESEEGYEQESGDEYDDQGDKPR 88
          QVEAEHKEEEESEEG EQESGDE DDQGDKPR
Sbjct: 35 QVEAEHKEEEESEEGSEQESGDESDDQGDKPR 66

[Close]

BLAST of MELO3C019472 vs. NCBI nr
Match: gi|449433786|ref|XP_004134678.1| (PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 56 QVEAEHKEEEESEEGYEQESGDEYDDQGDKPR 88
          QVEAEHKEEE+SEEG EQESGDE DDQGDKPR
Sbjct: 35 QVEAEHKEEEDSEEGSEQESGDESDDQGDKPR 66

The following BLAST results are available for this feature:

BLAST of MELO3C019472 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHS1_CUCSA	2.6e-07	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518250 PE=4 SV=1	[more]

BLAST of MELO3C019472 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18165.1	6.7e-07	35.90	modifier of snc1,4	[more]

BLAST of MELO3C019472 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078569\|ref\|XP_008439793.1\|	1.6e-07	93.75	PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Cucumis melo]	[more]
gi\|449433786\|ref\|XP_004134678.1\|	3.7e-07	90.63	PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019472T1	MELO3C019472T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 5..32 score: -coord: 54..74 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019472	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019472	Cucumber (Gy14) v2	cgybmeB210
MELO3C019472	Silver-seed gourd	carmeB0064
MELO3C019472	Silver-seed gourd	carmeB0651
MELO3C019472	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019472	Watermelon (97103) v2	mewmbB434
MELO3C019472	Wax gourd	mewgoB530
MELO3C019472	Cucumber (Gy14) v1	cgymeB002
MELO3C019472	Cucurbita maxima (Rimu)	cmameB298
MELO3C019472	Cucurbita maxima (Rimu)	cmameB691
MELO3C019472	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019472	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019472	Wild cucumber (PI 183967)	cpimeB241
MELO3C019472	Cucumber (Chinese Long) v2	cumeB166
MELO3C019472	Watermelon (Charleston Gray)	mewcgB427
MELO3C019472	Watermelon (97103) v1	mewmB461
MELO3C019472	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019472	Cucurbita pepo (Zucchini)	cpemeB412