MELO3C019458 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019458
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative ribonuclease H protein
Locationchr6 : 10062317 .. 10062652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

mRNA sequence

ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

Coding sequence (CDS)

ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

Protein sequence

MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG*
Homology
[Close]
BLAST of MELO3C019458 vs. TrEMBL
Match: A5AF89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E + LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 826 LGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRW--SHRCPW 885

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +IS+ +++      F +GNG R  FW D W G+ PL +QY   FR+ L
Sbjct: 886 KAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVL 932

[Close]
BLAST of MELO3C019458 vs. TrEMBL
Match: A5AF89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 6   IRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSWVSISR 65
           I ++N ALL KW WRY +E + LW KV+ SI+GS +  +D N + +  +  R  W +I++
Sbjct: 48  IVLRNVALLGKWLWRYHREGSALWHKVISSINGSHSNGWDANTIVRWSH--RCPWKAITQ 107

Query: 66  AWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRI 106
            +++     WF +GNG R  FW D W G+  L +QY + FR+
Sbjct: 108 VFQEFSKFTWFAVGNGDRIRFWEDLWWGDQSLSSQYPRLFRV 147


HSP 2 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E + LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 633 LGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRW--SHRCPW 692

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +IS+ ++       F +GNG +  FW D W G+ PL +QY+  FR+ L
Sbjct: 693 KAISQVFQVFSSFTQFVVGNGEKIRFWEDLWWGDQPLGSQYLSLFRVVL 739

[Close]
BLAST of MELO3C019458 vs. TrEMBL
Match: A5BBP9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028468 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHG--SETFDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E   LW +V+ SI+G  S  +D N L +  +  R  W
Sbjct: 247 LGFGNISLRNLALLGKWLWRYPREGLALWHQVILSIYGLHSNGWDANTLVRWSH--RCPW 306

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +I++ +++  +   F +GNG R  FW D W G+ PL  QY K FR+ +
Sbjct: 307 KAIAQVFQEFSLFTRFVVGNGERIRFWEDLWWGDQPLGTQYPKLFRVVV 353

[Close]
BLAST of MELO3C019458 vs. TrEMBL
Match: A5C624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040148 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-14
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1 

Query: 1    MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
            +G G I ++N ALL KW WRY +E   LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 1593 LGFGNISLRNLALLGKWLWRYPREGXALWXQVILSIYGSHSNGWDANTIVRW--SHRCPW 1652

Query: 61   VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
             +IS+ +++      F +GNG R  FW D W G+ PL +QY   FR+ L
Sbjct: 1653 KAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVL 1699

[Close]
BLAST of MELO3C019458 vs. TrEMBL
Match: A5BJC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1 

Query: 1    MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
            +G G I I+N ALL KW WRY +E +TLW +V+ SI+GS +   ++ N    S R  W +
Sbjct: 1559 LGFGKISIRNVALLGKWLWRYPREGSTLWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKA 1618

Query: 61   ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQY 100
            I+  +++     WF +GNG R  FW D W G+ PL  QY
Sbjct: 1619 IALVFQEFSKFTWFVVGNGDRIRFWDDLWWGDQPLGVQY 1657

[Close]
BLAST of MELO3C019458 vs. NCBI nr
Match: gi|147819440|emb|CAN73354.1| (hypothetical protein VITISV_016753 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E + LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 826 LGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRW--SHRCPW 885

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +IS+ +++      F +GNG R  FW D W G+ PL +QY   FR+ L
Sbjct: 886 KAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVL 932

[Close]
BLAST of MELO3C019458 vs. NCBI nr
Match: gi|147819440|emb|CAN73354.1| (hypothetical protein VITISV_016753 [Vitis vinifera])

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 6   IRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSWVSISR 65
           I ++N ALL KW WRY +E + LW KV+ SI+GS +  +D N + +  +  R  W +I++
Sbjct: 48  IVLRNVALLGKWLWRYHREGSALWHKVISSINGSHSNGWDANTIVRWSH--RCPWKAITQ 107

Query: 66  AWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRI 106
            +++     WF +GNG R  FW D W G+  L +QY + FR+
Sbjct: 108 VFQEFSKFTWFAVGNGDRIRFWEDLWWGDQSLSSQYPRLFRV 147


HSP 2 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E + LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 633 LGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRW--SHRCPW 692

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +IS+ ++       F +GNG +  FW D W G+ PL +QY+  FR+ L
Sbjct: 693 KAISQVFQVFSSFTQFVVGNGEKIRFWEDLWWGDQPLGSQYLSLFRVVL 739

[Close]
BLAST of MELO3C019458 vs. NCBI nr
Match: gi|147795395|emb|CAN69984.1| (hypothetical protein VITISV_028468 [Vitis vinifera])

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHG--SETFDRNILNKSGNSLRSSW 60
           +G G I ++N ALL KW WRY +E   LW +V+ SI+G  S  +D N L +  +  R  W
Sbjct: 247 LGFGNISLRNLALLGKWLWRYPREGLALWHQVILSIYGLHSNGWDANTLVRWSH--RCPW 306

Query: 61  VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
            +I++ +++  +   F +GNG R  FW D W G+ PL  QY K FR+ +
Sbjct: 307 KAIAQVFQEFSLFTRFVVGNGERIRFWEDLWWGDQPLGTQYPKLFRVVV 353

[Close]
BLAST of MELO3C019458 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1 

Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +G+G +R QN ALLAKW WR+  E  +LW KV+ S +G +    N L     S RS W  
Sbjct: 198 LGVGNLRNQNEALLAKWLWRFPMESQSLWHKVIRSKYGLQVNGWNALPPRRVSSRSPWKD 257

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIA 107
           IS    +      FK+GNG R  FW D W    PLK Q+ K F ++
Sbjct: 258 ISSGSHQFLRYCKFKVGNGERVRFWEDGWLAGGPLKEQFPKLFLLS 303

[Close]
BLAST of MELO3C019458 vs. NCBI nr
Match: gi|147791987|emb|CAN64256.1| (hypothetical protein VITISV_040148 [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-14
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1 

Query: 1    MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSET--FDRNILNKSGNSLRSSW 60
            +G G I ++N ALL KW WRY +E   LW +V+ SI+GS +  +D N + +   S R  W
Sbjct: 1593 LGFGNISLRNLALLGKWLWRYPREGXALWXQVILSIYGSHSNGWDANTIVRW--SHRCPW 1652

Query: 61   VSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIAL 108
             +IS+ +++      F +GNG R  FW D W G+ PL +QY   FR+ L
Sbjct: 1653 KAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVL 1699

The following BLAST results are available for this feature:
BLAST of MELO3C019458 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AF89_VITVI1.5e-1440.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1[more]
A5AF89_VITVI1.3e-1339.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1[more]
A5BBP9_VITVI2.0e-1439.45Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028468 PE=4 SV=1[more]
A5C624_VITVI3.4e-1440.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040148 PE=4 SV=1[more]
A5BJC9_VITVI3.4e-1442.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001463 PE=4 SV=1[more]
BLAST of MELO3C019458 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147819440|emb|CAN73354.1|2.2e-1440.37hypothetical protein VITISV_016753 [Vitis vinifera][more]
gi|147819440|emb|CAN73354.1|1.9e-1339.22hypothetical protein VITISV_016753 [Vitis vinifera][more]
gi|147795395|emb|CAN69984.1|2.9e-1439.45hypothetical protein VITISV_028468 [Vitis vinifera][more]
gi|657996200|ref|XP_008390463.1|4.9e-1441.51PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|147791987|emb|CAN64256.1|4.9e-1440.37hypothetical protein VITISV_040148 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU59731melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019458T1MELO3C019458T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59731MU59731transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019458Cucurbita pepo (Zucchini)cpemeB192
MELO3C019458Cucurbita pepo (Zucchini)cpemeB412
MELO3C019458Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C019458Cucumber (Gy14) v2cgybmeB210
MELO3C019458Silver-seed gourdcarmeB0064
MELO3C019458Silver-seed gourdcarmeB0651
MELO3C019458Cucumber (Chinese Long) v3cucmeB247
MELO3C019458Watermelon (97103) v2mewmbB434
MELO3C019458Wax gourdmewgoB530
MELO3C019458Cucumber (Gy14) v1cgymeB002
MELO3C019458Cucurbita maxima (Rimu)cmameB298
MELO3C019458Cucurbita maxima (Rimu)cmameB691
MELO3C019458Cucurbita moschata (Rifu)cmomeB290
MELO3C019458Cucurbita moschata (Rifu)cmomeB683
MELO3C019458Wild cucumber (PI 183967)cpimeB241
MELO3C019458Cucumber (Chinese Long) v2cumeB166
MELO3C019458Watermelon (Charleston Gray)mewcgB427
MELO3C019458Watermelon (97103) v1mewmB461