MELO3C019448 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019448
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent DNA helicase Q-like 4A
Locationchr6 : 9817289 .. 9817629 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAGCAATTTTCATCCGCTCACATACTTGAAGTCTACAGGGGTTCCTTAAGCCAATTTGTGGGTCATGATATAAACTTGTGTTTTTTCTGTTAGCTTCAAGTTGGGTATTTATTCTAATTGCCTTTTATTGACAAATCTAGGTGAAAAAACACAGACATGAAAAGTTGAGTCTGCATGGTGCTGGAAAACATCTTTTGAAAAGTGATGCTTCTCGCATATTGCACTATCTTGTTATTGAGGATATCCTCGTGGAAGAAGTGAAGAAAAATGATATTTATGGATCTGTTTCATCCCTACTGAAGGTGGTAAACCAATTGCTTCTTCCTTTATGCTAA

mRNA sequence

ATGGGGCAGCAATTTTCATCCGCTCACATACTTGAAGTCTACAGGGGTTCCTTAAGCCAATTTGTGAAAAAACACAGACATGAAAAGTTGAGTCTGCATGGTGCTGGAAAACATCTTTTGAAAAGTGATGCTTCTCGCATATTGCACTATCTTGTTATTGAGGATATCCTCGTGGAAGAAGTGAAGAAAAATGATATTTATGGATCTGTTTCATCCCTACTGAAGGTGGTAAACCAATTGCTTCTTCCTTTATGCTAA

Coding sequence (CDS)

ATGGGGCAGCAATTTTCATCCGCTCACATACTTGAAGTCTACAGGGGTTCCTTAAGCCAATTTGTGAAAAAACACAGACATGAAAAGTTGAGTCTGCATGGTGCTGGAAAACATCTTTTGAAAAGTGATGCTTCTCGCATATTGCACTATCTTGTTATTGAGGATATCCTCGTGGAAGAAGTGAAGAAAAATGATATTTATGGATCTGTTTCATCCCTACTGAAGGTGGTAAACCAATTGCTTCTTCCTTTATGCTAA

Protein sequence

MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEVKKNDIYGSVSSLLKVVNQLLLPLC*
Homology
[Close]
BLAST of MELO3C019448 vs. Swiss-Prot
Match: RQL4A_ARATH (ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-27
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           G++FSSAHILEVYRGSL+Q VKKHRHE L  HGAGKHL K + SRILHYLV EDILVE+V
Sbjct: 884 GERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDV 943

Query: 62  KKNDIYGSVSSLLKVVN 79
           +K+D+YGSVSSLL+V N
Sbjct: 944 RKSDMYGSVSSLLQVNN 960

[Close]
BLAST of MELO3C019448 vs. Swiss-Prot
Match: RQL4B_ARATH (ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-25
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           G++FSSAHI+E+YRGSL+Q VK++R + L LHGAGKHL KS+ASRILHYLV EDIL E V
Sbjct: 900 GERFSSAHIVEIYRGSLNQSVKRNRQDTLHLHGAGKHLTKSEASRILHYLVTEDILAEGV 959

Query: 62  KKNDIYGSVSSLLKV 77
           KK+++YGSVSSLLKV
Sbjct: 960 KKSELYGSVSSLLKV 974

[Close]
BLAST of MELO3C019448 vs. TrEMBL
Match: A0A0A0L762_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-31
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHG GKHLLKS+ASRILH+LVIEDILVEE
Sbjct: 869 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGTGKHLLKSEASRILHHLVIEDILVEE 928

Query: 61  VKKNDIYGSVSSLLKV 77
           V+K+DIYGSVSSLLKV
Sbjct: 929 VRKSDIYGSVSSLLKV 944

[Close]
BLAST of MELO3C019448 vs. TrEMBL
Match: A0A061E184_THECC (DNA helicase isoform 1 OS=Theobroma cacao GN=TCM_006933 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 1 

Query: 2    GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
            GQQFSS+HILEVYRGSLSQFVKKHRHE LSLHGAGKH+ K +ASRIL +LVIE+ LVE+V
Sbjct: 928  GQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGAGKHVAKGEASRILRHLVIEEFLVEDV 987

Query: 62   KKNDIYGSVSSLLKVVNQLLLPLC 86
            KK+DIYGSVSS+LKV    +  LC
Sbjct: 988  KKSDIYGSVSSVLKVNESKVQNLC 1011

[Close]
BLAST of MELO3C019448 vs. TrEMBL
Match: A0A022QCX5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000354mg PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 61/75 (81.33%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           GQQFS+AH+LEVYRGSLSQFVKKHRHE LSLHGAGKHL K +ASR+L +LVIEDILVE+V
Sbjct: 911 GQQFSAAHLLEVYRGSLSQFVKKHRHENLSLHGAGKHLAKGEASRVLRHLVIEDILVEDV 970

Query: 62  KKNDIYGSVSSLLKV 77
           KK+D+YGSVSS++KV
Sbjct: 971 KKSDLYGSVSSIVKV 985

[Close]
BLAST of MELO3C019448 vs. TrEMBL
Match: A0A061E0C7_THECC (DNA helicase (RECQl4A) isoform 2 OS=Theobroma cacao GN=TCM_006933 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 64/84 (76.19%), Postives = 73/84 (86.90%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           GQQFSS+HILEVYRGSLSQFVKKHRHE LSLHGAGKH+ K +ASRIL +LVIE+ LVE+V
Sbjct: 874 GQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGAGKHVAKGEASRILRHLVIEEFLVEDV 933

Query: 62  KKNDIYGSVSSLLKVVNQLLLPLC 86
           KK+DIYGSVSS+LKV    +  LC
Sbjct: 934 KKSDIYGSVSSVLKVNESKVQNLC 957

[Close]
BLAST of MELO3C019448 vs. TrEMBL
Match: V4SBW7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000077mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.1e-27
Identity = 62/75 (82.67%), Postives = 71/75 (94.67%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           GQQFSS+HILEV+RGSL+QFVKKHRHE LSLHGAGKHL KS+ASRIL +LVIED L+EEV
Sbjct: 826 GQQFSSSHILEVFRGSLNQFVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEV 885

Query: 62  KKNDIYGSVSSLLKV 77
           KK+D+YGSVSS+LKV
Sbjct: 886 KKSDVYGSVSSVLKV 900

[Close]
BLAST of MELO3C019448 vs. TAIR10
Match: AT1G10930.1 (AT1G10930.1 DNA helicase (RECQl4A))

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-28
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           G++FSSAHILEVYRGSL+Q VKKHRHE L  HGAGKHL K + SRILHYLV EDILVE+V
Sbjct: 884 GERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDV 943

Query: 62  KKNDIYGSVSSLLKVVN 79
           +K+D+YGSVSSLL+V N
Sbjct: 944 RKSDMYGSVSSLLQVNN 960

[Close]
BLAST of MELO3C019448 vs. TAIR10
Match: AT1G60930.1 (AT1G60930.1 RECQ helicase L4B)

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-26
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 2   GQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEEV 61
           G++FSSAHI+E+YRGSL+Q VK++R + L LHGAGKHL KS+ASRILHYLV EDIL E V
Sbjct: 900 GERFSSAHIVEIYRGSLNQSVKRNRQDTLHLHGAGKHLTKSEASRILHYLVTEDILAEGV 959

Query: 62  KKNDIYGSVSSLLKV 77
           KK+++YGSVSSLLKV
Sbjct: 960 KKSELYGSVSSLLKV 974

[Close]
BLAST of MELO3C019448 vs. NCBI nr
Match: gi|659112082|ref|XP_008456057.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE
Sbjct: 889 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 948

Query: 61  VKKNDIYGSVSSLLKV 77
           VKKNDIYGSVSSLLKV
Sbjct: 949 VKKNDIYGSVSSLLKV 964

[Close]
BLAST of MELO3C019448 vs. NCBI nr
Match: gi|659112086|ref|XP_008456059.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE
Sbjct: 866 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 925

Query: 61  VKKNDIYGSVSSLLKV 77
           VKKNDIYGSVSSLLKV
Sbjct: 926 VKKNDIYGSVSSLLKV 941

[Close]
BLAST of MELO3C019448 vs. NCBI nr
Match: gi|659112088|ref|XP_008456060.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE
Sbjct: 856 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 915

Query: 61  VKKNDIYGSVSSLLKV 77
           VKKNDIYGSVSSLLKV
Sbjct: 916 VKKNDIYGSVSSLLKV 931

[Close]
BLAST of MELO3C019448 vs. NCBI nr
Match: gi|659112090|ref|XP_008456061.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X4 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE
Sbjct: 822 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 881

Query: 61  VKKNDIYGSVSSLLKV 77
           VKKNDIYGSVSSLLKV
Sbjct: 882 VKKNDIYGSVSSLLKV 897

[Close]
BLAST of MELO3C019448 vs. NCBI nr
Match: gi|659112092|ref|XP_008456062.1| (PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X5 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1   MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 60
           MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE
Sbjct: 524 MGQQFSSAHILEVYRGSLSQFVKKHRHEKLSLHGAGKHLLKSDASRILHYLVIEDILVEE 583

Query: 61  VKKNDIYGSVSSLLKV 77
           VKKNDIYGSVSSLLKV
Sbjct: 584 VKKNDIYGSVSSLLKV 599

The following BLAST results are available for this feature:
BLAST of MELO3C019448 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RQL4A_ARATH3.9e-2776.62ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=... [more]
RQL4B_ARATH8.1e-2573.33ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana GN=RECQL4B PE=2 SV=... [more]
BLAST of MELO3C019448 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L762_CUCSA2.4e-3193.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G221760 PE=4 SV=1[more]
A0A061E184_THECC3.6e-2776.19DNA helicase isoform 1 OS=Theobroma cacao GN=TCM_006933 PE=4 SV=1[more]
A0A022QCX5_ERYGU3.6e-2781.33Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000354mg PE=4 SV=1[more]
A0A061E0C7_THECC3.6e-2776.19DNA helicase (RECQl4A) isoform 2 OS=Theobroma cacao GN=TCM_006933 PE=4 SV=1[more]
V4SBW7_9ROSI6.1e-2782.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000077mg PE=4 SV=1[more]
BLAST of MELO3C019448 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10930.12.2e-2876.62 DNA helicase (RECQl4A)[more]
AT1G60930.14.6e-2673.33 RECQ helicase L4B[more]
BLAST of MELO3C019448 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112082|ref|XP_008456057.1|1.3e-33100.00PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Cucumis melo][more]
gi|659112086|ref|XP_008456059.1|1.3e-33100.00PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Cucumis melo][more]
gi|659112088|ref|XP_008456060.1|1.3e-33100.00PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X3 [Cucumis melo][more]
gi|659112090|ref|XP_008456061.1|1.3e-33100.00PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X4 [Cucumis melo][more]
gi|659112092|ref|XP_008456062.1|1.3e-33100.00PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X5 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011991Winged helix-turn-helix DNA-binding domain
IPR018982RQC_domain
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0043140ATP-dependent 3'-5' DNA helicase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0005657 replication fork
molecular_function GO:0005524 ATP binding
molecular_function GO:0043140 ATP-dependent 3'-5' DNA helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019448T1MELO3C019448T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 1..68
score: 6.9
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 1..65
score: 3.4
IPR018982RQC domainPFAMPF09382RQCcoord: 1..66
score: 9.1
IPR018982RQC domainSMARTSM00956RQC_2coord: 1..78
score: 0.
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 1..76
score: 3.3
NoneNo IPR availablePANTHERPTHR13710:SF94ATP-DEPENDENT DNA HELICASE RECQ FAMILY PROTEINcoord: 1..76
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019448Silver-seed gourdcarmeB0041
MELO3C019448Silver-seed gourdcarmeB0651
MELO3C019448Cucumber (Chinese Long) v3cucmeB247
MELO3C019448Watermelon (97103) v2mewmbB434
MELO3C019448Wax gourdmewgoB530
MELO3C019448Cucumber (Gy14) v1cgymeB002
MELO3C019448Cucurbita maxima (Rimu)cmameB298
MELO3C019448Cucurbita maxima (Rimu)cmameB691
MELO3C019448Cucurbita moschata (Rifu)cmomeB290
MELO3C019448Cucurbita moschata (Rifu)cmomeB683
MELO3C019448Wild cucumber (PI 183967)cpimeB241
MELO3C019448Cucumber (Chinese Long) v2cumeB166
MELO3C019448Watermelon (Charleston Gray)mewcgB427
MELO3C019448Watermelon (97103) v1mewmB461
MELO3C019448Cucurbita pepo (Zucchini)cpemeB192
MELO3C019448Cucurbita pepo (Zucchini)cpemeB412
MELO3C019448Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C019448Cucumber (Gy14) v2cgybmeB210