MELO3C019443.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C019443.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSerine hydroxymethyltransferase
Locationchr06 : 10820562 .. 10821912 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGGTGAGATTGAAATCCTTTGTCATGAGCGCGCATTTTGGCAGCATTTGATCTTAATCCTCACACGTGGGGAGTTAACGTTCAACCTTATTCATGCACATCTGCAAATTTTTCCGTCTAAACTGGTTATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGTGTGAATTTTTCGTCATCTTTAGCGATGTACTATCCCTTTAATGTCTGTGTAAAAAAAAAAAAAAATTTGGTTCGGGTCCACAAAGTTCTTGGTTTTCTTATCATATGTTCTAGTTACTATGACGTTCTCATTCTCTTGGGTTGCAATTTAGCTGGTTGTTAATATATTCATAATAATTGAATTGTTCTACCTGACACTTAGAAAAGGCTTCAAATGTGGTTGTGTGGAAATTTATTGTAGTTTTTAGCATTTAGGTTATGAATGGCTATGAAACTTAGTGATAGGAAAATGTAACTTATCGAGAGATTATGGTAGAGACTGATTTTAGGACTTAACCCTAGTTTACAAGTGCGTTGGGCCAAGATGTCAACCCATGGATATTTTTTTTTTGGACCAAAACGATTTGGTATTTATTCTTTCATGGTGGATATGTATTTATCAGAAAAACTGAAAGCTTGACCAACATCTATTATTTTTCTCAGCAGTAGGATGTTATTTTTTCTCTTCCTTTTCTACTTGGTTCTAATATACAGTTTTGTTCAACTGTGTGCTTATGTAGTTCTCAGTATTATTTGTTTACATGTGTAATTGTTTCTTCACTTACATTGTTTGGTCCAGTTCATCACTACTTCATACATGTGATCTTGTAATTTTGAATGAAGAATTGTCTCCATTCTGTTTATACTTTGATTGTGGTTTAAAATTTTGTTACAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

mRNA sequence

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Coding sequence (CDS)

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Protein sequence

METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRGIIFL
Homology
[Close]
BLAST of MELO3C019443.2 vs. NCBI nr
Match: XP_008456065.1 (PREDICTED: serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. NCBI nr
Match: XP_016901913.1 (PREDICTED: serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 7.2e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. NCBI nr
Match: XP_004146284.1 (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus] >KGN57592.1 hypothetical protein Csa_3G221750 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 146/259 (56.37%), Postives = 152/259 (58.69%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. NCBI nr
Match: XP_022922715.1 (serine hydroxymethyltransferase 7-like [Cucurbita moschata])

HSP 1 Score: 242.7 bits (618), Expect = 9.1e-61
Identity = 138/259 (53.28%), Postives = 147/259 (56.76%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +ETRR  VRSWGNQTLR+ DP L+GI++KEKQ QI GIEL ASENYV RAVMEALGSHLT
Sbjct: 116 LETRRSAVRSWGNQTLRATDPNLFGIMEKEKQRQIKGIELIASENYVCRAVMEALGSHLT 175

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 176 NKYSEGMPGARYYCGNQYIDEIETLCRERALAAFGLDSDSWGVNVQPYSCTSANFAVYTG 235

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 236 LLLPGDRIMGLDTPSGGNTSHGYCTPNGRKVSGASIFFESFPYKVNPQTGYIDYDKLEER 295

[Close]
BLAST of MELO3C019443.2 vs. NCBI nr
Match: XP_023552257.1 (serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.7 bits (618), Expect = 9.1e-61
Identity = 138/259 (53.28%), Postives = 147/259 (56.76%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +ETRR  VRSWGNQTLR+ DP L+GI++KEKQ QI GIEL ASENYV RAVMEALGSHLT
Sbjct: 116 LETRRSAVRSWGNQTLRAADPNLFGIMEKEKQRQIKGIELIASENYVCRAVMEALGSHLT 175

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 176 NKYSEGMPGARYYCGNQYIDEIETLCRERALAAFGLDSDSWGVNVQPYSCTSANFAVYTG 235

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 236 LLLPGDRIMGLDTPSGGNTSHGYCTPNGRKVSGASIFFESFPYKVNPQTGYIDYDKLEER 295

[Close]
BLAST of MELO3C019443.2 vs. TAIR10
Match: AT1G36370.1 (serine hydroxymethyltransferase 7)

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-54
Identity = 115/259 (44.40%), Postives = 141/259 (54.44%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 183 NKYSEGMPGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTG 242

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLE++
Sbjct: 243 LLLPGERIMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDK 302

[Close]
BLAST of MELO3C019443.2 vs. TAIR10
Match: AT1G22020.1 (serine hydroxymethyltransferase 6)

HSP 1 Score: 207.2 bits (526), Expect = 7.7e-54
Identity = 117/259 (45.17%), Postives = 139/259 (53.67%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTG 246

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEE+
Sbjct: 247 LLMPGERIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEK 306

[Close]
BLAST of MELO3C019443.2 vs. TAIR10
Match: AT4G13930.1 (serine hydroxymethyltransferase 4)

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-52
Identity = 116/252 (46.03%), Postives = 134/252 (53.17%), Query Frame = 0 

Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4   VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGGN+                                                  
Sbjct: 64  PGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+AL F PK
Sbjct: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPK 183

[Close]
BLAST of MELO3C019443.2 vs. TAIR10
Match: AT4G13890.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-47
Identity = 108/252 (42.86%), Postives = 126/252 (50.00%), Query Frame = 0 

Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4   VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGG +                                                  
Sbjct: 64  PGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+A+ F PK
Sbjct: 124 IMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPK 183

[Close]
BLAST of MELO3C019443.2 vs. TAIR10
Match: AT4G32520.1 (serine hydroxymethyltransferase 3)

HSP 1 Score: 157.1 bits (396), Expect = 9.2e-39
Identity = 97/243 (39.92%), Postives = 111/243 (45.68%), Query Frame = 0 

Query: 16  LRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGG 75
           L  VDP +  II KEK  Q   +EL ASEN+  RAVMEA+GS LTNKYS+G+PG RYYGG
Sbjct: 83  LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142

Query: 76  NQYI-------------------------------------------------------- 135
           N+YI                                                        
Sbjct: 143 NEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPH 202

Query: 136 ------------------------------------DYDKLEERALAFCPKLLICGGSAY 167
                                               DYD LE+ A  F PKL+I G SAY
Sbjct: 203 GGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAY 262

[Close]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match: sp|Q84WV0|GLYC7_ARATH (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.3e-53
Identity = 115/259 (44.40%), Postives = 141/259 (54.44%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 183 NKYSEGMPGARYYTGNQYIDQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTG 242

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLE++
Sbjct: 243 LLLPGERIMGLDSPSGGHMSHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDK 302

[Close]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match: sp|Q9LM59|GLYC6_ARATH (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-52
Identity = 117/259 (45.17%), Postives = 139/259 (53.67%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYY GNQ                                           
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTG 246

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEE+
Sbjct: 247 LLMPGERIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEK 306

[Close]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match: sp|O23254|GLYC4_ARATH (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.6e-51
Identity = 116/252 (46.03%), Postives = 134/252 (53.17%), Query Frame = 0 

Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4   VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGGN+                                                  
Sbjct: 64  PGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+AL F PK
Sbjct: 124 IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPK 183

[Close]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match: sp|Q9SVM4|GLYC5_ARATH (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.3e-46
Identity = 108/252 (42.86%), Postives = 126/252 (50.00%), Query Frame = 0 

Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4   VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68  PGARYYGGNQ-------------------------------------------------- 127
           PG RYYGG +                                                  
Sbjct: 64  PGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDR 123

Query: 128 -------------------------------------------YIDYDKLEERALAFCPK 167
                                                      YIDYDKLEE+A+ F PK
Sbjct: 124 IMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPK 183

[Close]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match: sp|Q54Z26|GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=shmt1 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 99/246 (40.24%), Postives = 116/246 (47.15%), Query Frame = 0 

Query: 12  GNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGAR 71
           GN  L+ VD  ++ ++ +EK  Q  G+EL ASEN+  RAVMEALGSH TNKY++G PG+R
Sbjct: 6   GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSR 65

Query: 72  YYGGNQ------------------------------------------------------ 131
           YYGG +                                                      
Sbjct: 66  YYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGL 125

Query: 132 -------------------------------------YIDYDKLEERALAFCPKLLICGG 167
                                                 IDY +LEE AL F PKL+I G 
Sbjct: 126 DLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADGLIDYQRLEENALLFKPKLIISGA 185

[Close]
BLAST of MELO3C019443.2 vs. TrEMBL
Match: tr|A0A1S4E114|A0A1S4E114_CUCME (Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.8e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. TrEMBL
Match: tr|A0A1S3C2G6|A0A1S3C2G6_CUCME (Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.8e-66
Identity = 147/259 (56.76%), Postives = 153/259 (59.07%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. TrEMBL
Match: tr|A0A0A0LAD1|A0A0A0LAD1_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G221750 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-65
Identity = 146/259 (56.37%), Postives = 152/259 (58.69%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALAAFDLNPHSWGVNVQPYSCTSANFAVYTG 232

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 233 LLLPGDRIMALDSPSGGNPSHGYCTRNGKKVAGASIFFESFPYKVNPQTGYIDYDKLEER 292

[Close]
BLAST of MELO3C019443.2 vs. TrEMBL
Match: tr|A0A2G9G0D1|A0A2G9G0D1_9LAMI (Serine hydroxymethyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28774 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 4.1e-57
Identity = 128/259 (49.42%), Postives = 144/259 (55.60%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           ME RR  VR+WGNQ L+S DP ++ I++KEKQ Q  GIEL ASEN+V +AVMEALGSHLT
Sbjct: 131 MELRRNAVRAWGNQGLQSADPDIFNIMEKEKQRQFKGIELIASENFVCKAVMEALGSHLT 190

Query: 61  NKYSKGIPGARYYGGNQYI----------------------------------------- 120
           NKYS+G+PGARYYGGNQYI                                         
Sbjct: 191 NKYSEGMPGARYYGGNQYIDEIETLCRERALAAFGLDFESWGVNVQPYSCTSANFAVYTG 250

Query: 121 ----------------------------------------------------DYDKLEER 167
                                                               DYDKLEER
Sbjct: 251 LLLPGDRIMGLDTPSGGNTSHGCYLPNGRKVSGASIFFESLPYKVNPQTGYVDYDKLEER 310

[Close]
BLAST of MELO3C019443.2 vs. TrEMBL
Match: tr|A0A2P6PCZ6|A0A2P6PCZ6_ROSCH (Serine hydroxymethyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0221291 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 5.3e-57
Identity = 128/259 (49.42%), Postives = 144/259 (55.60%), Query Frame = 0 

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E RR  VR+WG+Q LR  DP ++GI+ KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 118 LEARRTAVRAWGDQPLRVADPDVFGIMDKEKQRQFKGIELIASENFVCRAVMEALGSHLT 177

Query: 61  NKYSKGIPGARYYGGNQ------------------------------------------- 120
           NKYS+G+PGARYYGGNQ                                           
Sbjct: 178 NKYSEGMPGARYYGGNQYIDEIETLCCKRALAAFGLDAENWGVNVQPYSCTSANFAVYTG 237

Query: 121 --------------------------------------------------YIDYDKLEER 167
                                                             YIDYDKLEER
Sbjct: 238 LLLPGDRIMGLDTPSGGNTSHGYYTSNGRKVSGASIFFETLPYKVNLQTGYIDYDKLEER 297

The following BLAST results are available for this feature:
BLAST of MELO3C019443.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456065.17.2e-6656.76PREDICTED: serine hydroxymethyltransferase 7-like isoform X1 [Cucumis melo][more]
XP_016901913.17.2e-6656.76PREDICTED: serine hydroxymethyltransferase 6-like isoform X2 [Cucumis melo][more]
XP_004146284.12.1e-6556.37PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus] >KGN57592.1 ... [more]
XP_022922715.19.1e-6153.28serine hydroxymethyltransferase 7-like [Cucurbita moschata][more]
XP_023552257.19.1e-6153.28serine hydroxymethyltransferase 7-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C019443.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G36370.13.5e-5444.40serine hydroxymethyltransferase 7[more]
AT1G22020.17.7e-5445.17serine hydroxymethyltransferase 6[more]
AT4G13930.14.2e-5246.03serine hydroxymethyltransferase 4[more]
AT4G13890.12.4e-4742.86Pyridoxal phosphate (PLP)-dependent transferases superfamily protein[more]
AT4G32520.19.2e-3939.92serine hydroxymethyltransferase 3[more]
BLAST of MELO3C019443.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84WV0|GLYC7_ARATH6.3e-5344.40Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=SHM7 PE=2 S... [more]
sp|Q9LM59|GLYC6_ARATH1.4e-5245.17Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=SHM6 PE=2 S... [more]
sp|O23254|GLYC4_ARATH7.6e-5146.03Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=SHM4 PE=1 S... [more]
sp|Q9SVM4|GLYC5_ARATH4.3e-4642.86Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=SHM5 PE=3 S... [more]
sp|Q54Z26|GLYC1_DICDI1.2e-4040.24Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum OX=44689 GN=shmt1 ... [more]
BLAST of MELO3C019443.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E114|A0A1S4E114_CUCME4.8e-6656.76Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=... [more]
tr|A0A1S3C2G6|A0A1S3C2G6_CUCME4.8e-6656.76Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103496109 PE=3 SV=... [more]
tr|A0A0A0LAD1|A0A0A0LAD1_CUCSA1.4e-6556.37Serine hydroxymethyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G221750 PE=3 ... [more]
tr|A0A2G9G0D1|A0A2G9G0D1_9LAMI4.1e-5749.42Serine hydroxymethyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12... [more]
tr|A0A2P6PCZ6|A0A2P6PCZ6_ROSCH5.3e-5749.42Serine hydroxymethyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0221... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR019798Ser_HO-MeTrfase_PLP_BS
IPR015421PyrdxlP-dep_Trfase_major
IPR015422PyrdxlP-dep_Trfase_dom1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006730 one-carbon metabolic process
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019443.2.1MELO3C019443.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF00464SHMTcoord: 77..166
e-value: 9.7E-36
score: 123.1
NoneNo IPR availablePANTHERPTHR11680:SF7SERINE HYDROXYMETHYLTRANSFERASE 6-RELATEDcoord: 1..80
coord: 78..166
NoneNo IPR availablePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 1..80
coord: 78..166
IPR015422Pyridoxal phosphate-dependent transferase domain 1GENE3DG3DSA:3.90.1150.10coord: 20..44
e-value: 3.8E-22
score: 80.2
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3DG3DSA:3.40.640.10coord: 45..78
e-value: 3.8E-22
score: 80.2
coord: 79..166
e-value: 1.5E-40
score: 140.8
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding sitePROSITEPS00096SHMTcoord: 147..163
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILYSSF53383PLP-dependent transferasescoord: 6..166

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019443.2Cucumber (Gy14) v2cgybmedB215
MELO3C019443.2Cucumber (Gy14) v1cgymedB002
MELO3C019443.2Cucurbita maxima (Rimu)cmamedB346
MELO3C019443.2Cucurbita maxima (Rimu)cmamedB777
MELO3C019443.2Cucurbita moschata (Rifu)cmomedB332
MELO3C019443.2Cucurbita moschata (Rifu)cmomedB774
MELO3C019443.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C019443.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C019443.2Wild cucumber (PI 183967)cpimedB239
MELO3C019443.2Cucumber (Chinese Long) v2cumedB238
MELO3C019443.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C019443.2Watermelon (Charleston Gray)medwcgB417
MELO3C019443.2Watermelon (97103) v1medwmB448
MELO3C019443.2Silver-seed gourdcarmedB0042
MELO3C019443.2Silver-seed gourdcarmedB0661
MELO3C019443.2Cucumber (Chinese Long) v3cucmedB246
MELO3C019443.2Watermelon (97103) v2medwmbB424
MELO3C019443.2Wax gourdmedwgoB531