MELO3C019431.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C019431.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06 : 10675011 .. 10675709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATAGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTTTACATCACTCGACCAAGAGCAGCCGTGGGCCATCTGGTACATATTTAACTATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTTACAATTTACAGAGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTAATATATGTAATAATAATAAGAGGTACATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAGAGTTCAGAATCGACGTCGA

mRNA sequence

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATAGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTTTACATCACTCGACCAAGAGCAGCCGTGGGCCATCTGAGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTAATATATGTAATAATAATAAGAGGTACATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAGAGTTCAGAATCGACGTCGA

Coding sequence (CDS)

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATAGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTTTACATCACTCGACCAAGAGCAGCCGTGGGCCATCTGAGATCGAACAACGCAAGACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTAATATATGTAATAATAATAAGAGGTACATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAG

Protein sequence

MAIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPGGPITT
Homology
[Close]
BLAST of MELO3C019431.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 77/116 (66.38%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 2   AIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNIC 61
           A G  I+QFD+DVTQEYIHWY NI++LYIT+P AA+ HLRSNN RLR++ADDPQQVLNIC
Sbjct: 11  ATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNIC 70

Query: 62  NNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEA-ELDEVYHNVEEVPPTTQTQSQT 117
           N+N++YME IH MYD+ IVP PV R R  V+E+ +L+EV  + EEVPP TQTQ+Q+
Sbjct: 71  NDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 126

[Close]
BLAST of MELO3C019431.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 0 

Query: 12  IDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 71
           +DVTQEYIHWY NI++LYIT+P AA+ HLRSNN RLR++ADDPQQVLNICN+N++YME I
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72  HNMYDLSIVPPPVHRGRVRVEEA-ELDEVYHNVEEVPPTTQTQSQT 117
           H MYD+ IVP PV R R  V+E+ +L+EV  + EEVPP TQTQ+Q+
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 106

[Close]
BLAST of MELO3C019431.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 7.9e-19
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 2   AIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNIC 61
           A G  I+QFD+DVTQEYI+WY NI++LYIT+P AA+ HLRSNN RLR+VADDPQQVLNIC
Sbjct: 102 ATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNIC 161

Query: 62  NNNK 66
           N+N+
Sbjct: 162 NDNE 165

[Close]
BLAST of MELO3C019431.2 vs. NCBI nr
Match: KGN45851.1 (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-14
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 42  SNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYH 101
           SNN  L DVAD  Q +L+I NNN+RYMEEIH      IVPP V RG VRVEE ELDE+YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIH-----YIVPPSVRRGHVRVEEVELDEIYH 77

Query: 102 NVEEVPPTTQTQS 115
           N++E+ P  QTQS
Sbjct: 78  NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C019431.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 41  RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEA-ELDEV 100
           RS N RL++VADDPQQVLNICN+N++YME IH MY++ IVP  V R R  V+E+ +L+EV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 101 YHNVEEVP 108
             +VEEVP
Sbjct: 222 VQHVEEVP 229

[Close]
BLAST of MELO3C019431.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 77/116 (66.38%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 2   AIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNIC 61
           A G  I+QFD+DVTQEYIHWY NI++LYIT+P AA+ HLRSNN RLR++ADDPQQVLNIC
Sbjct: 11  ATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNIC 70

Query: 62  NNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEA-ELDEVYHNVEEVPPTTQTQSQT 117
           N+N++YME IH MYD+ IVP PV R R  V+E+ +L+EV  + EEVPP TQTQ+Q+
Sbjct: 71  NDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 126

[Close]
BLAST of MELO3C019431.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-32
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 0 

Query: 12  IDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEI 71
           +DVTQEYIHWY NI++LYIT+P AA+ HLRSNN RLR++ADDPQQVLNICN+N++YME I
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72  HNMYDLSIVPPPVHRGRVRVEEA-ELDEVYHNVEEVPPTTQTQSQT 117
           H MYD+ IVP PV R R  V+E+ +L+EV  + EEVPP TQTQ+Q+
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 106

[Close]
BLAST of MELO3C019431.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 2   AIGVSIQQFDIDVTQEYIHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNIC 61
           A G  I+QFD+DVTQEYI+WY NI++LYIT+P AA+ HLRSNN RLR+VADDPQQVLNIC
Sbjct: 102 ATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNIC 161

Query: 62  NNNK 66
           N+N+
Sbjct: 162 NDNE 165

[Close]
BLAST of MELO3C019431.2 vs. TrEMBL
Match: tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 42  SNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYH 101
           SNN  L DVAD  Q +L+I NNN+RYMEEIH      IVPP V RG VRVEE ELDE+YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIH-----YIVPPSVRRGHVRVEEVELDEIYH 77

Query: 102 NVEEVPPTTQTQS 115
           N++E+ P  QTQS
Sbjct: 78  NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C019431.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 41  RSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRGRVRVEEA-ELDEV 100
           RS N RL++VADDPQQVLNICN+N++YME IH MY++ IVP  V R R  V+E+ +L+EV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 101 YHNVEEVP 108
             +VEEVP
Sbjct: 215 VQHVEEVP 222

The following BLAST results are available for this feature:
BLAST of MELO3C019431.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.11.6e-3566.38PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.14.8e-3266.98PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.17.9e-1973.44PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
KGN45851.13.5e-1463.01hypothetical protein Csa_6G014710 [Cucumis sativus][more]
XP_008461670.13.2e-1261.76PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
BLAST of MELO3C019431.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C019431.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C019431.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME1.1e-3566.38mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME3.2e-3266.98GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME5.3e-1973.44serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA2.3e-1463.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1[more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME2.1e-1261.76CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019431.2.1MELO3C019431.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019431.2Silver-seed gourdcarmedB0042
MELO3C019431.2Silver-seed gourdcarmedB0661
MELO3C019431.2Cucumber (Chinese Long) v3cucmedB246
MELO3C019431.2Watermelon (97103) v2medwmbB424
MELO3C019431.2Wax gourdmedwgoB531
MELO3C019431.2Cucumber (Gy14) v2cgybmedB215
MELO3C019431.2Cucumber (Gy14) v1cgymedB002
MELO3C019431.2Cucurbita maxima (Rimu)cmamedB346
MELO3C019431.2Cucurbita maxima (Rimu)cmamedB777
MELO3C019431.2Cucurbita moschata (Rifu)cmomedB332
MELO3C019431.2Cucurbita moschata (Rifu)cmomedB774
MELO3C019431.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C019431.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C019431.2Wild cucumber (PI 183967)cpimedB239
MELO3C019431.2Cucumber (Chinese Long) v2cumedB238
MELO3C019431.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C019431.2Watermelon (Charleston Gray)medwcgB417
MELO3C019431.2Watermelon (97103) v1medwmB448