MELO3C019431 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019431
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein translocase subunit SecA
Location	chr6 : 9598259 .. 9598660 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAG

mRNA sequence

ATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAG

Coding sequence (CDS)

ATGGAGGAGATACATAATATGTACGATCTATCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTTGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAACTGGTTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTATGATTCTGAGGTCGGTACAGGATATTATGATGCAGGGATCAGTCCATCGTCTTTATACATGGATGTCGGTCCATCTAATTTTTACATGCATGGACATAAACGTGGCTATGGAGAACATAACAAATATCTGTGCACCTACAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAAAACCAGGAGGACCGATAACAACATAG

Protein sequence

MEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVGTGYYDAGISPSSLYMDVGPSNFYMHGHKRGYGEHNKYLCTYRCIRSTRVPTRTRKPGGPITT*

Homology

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BLAST of MELO3C019431 vs. TrEMBL
Match: A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 1  MEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 48
          MEEIH      IVPP V RG VRVEE ELDE+YHN++E+ P  QTQS
Sbjct: 44 MEEIHY-----IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

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BLAST of MELO3C019431 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 67/125 (53.60%), Postives = 81/125 (64.80%), Query Frame = 1


Query: 1   MEEIHNMYDLSIVPPPVHRGRVRVEEAE-LDEVYHNVEEVPPTTQTQSQT--GYGSPMTM 60
           ME IH MYD+ IVP PV R R  V+E++ L+EV  + EEVPP TQTQ+Q+   Y SP+ M
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MPTFGAGYYDSEV------GTGYYDAGISPSSL-----YMDVG--PSNFYMHGHKRGYGE 110
           MPTFG  YYDS V      G GYY++    SS      Y D+G  PS+ YMHGH RG GE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

[Close]

BLAST of MELO3C019431 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 24  VEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYYDSEVG------TGYYDA 83
           V+  +L+EV  NVEEV P TQTQS+ GY S + MMPTFG  YYD  VG      T YY++
Sbjct: 166 VKSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNS 225

[Close]

BLAST of MELO3C019431 vs. NCBI nr
Match: gi|700190647|gb|KGN45851.1| (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 1  MEEIHNMYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 48
          MEEIH      IVPP V RG VRVEE ELDE+YHN++E+ P  QTQS
Sbjct: 44 MEEIHY-----IVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS 85

The following BLAST results are available for this feature:

BLAST of MELO3C019431 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDI9_CUCSA	4.1e-06	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1	[more]

BLAST of MELO3C019431 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	2.6e-22	53.60	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	2.0e-06	51.52	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]
gi\|700190647\|gb\|KGN45851.1\|	5.9e-06	63.83	hypothetical protein Csa_6G014710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019431T1	MELO3C019431T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019431	Wax gourd	mewgoB530
MELO3C019431	Cucumber (Gy14) v1	cgymeB002
MELO3C019431	Cucurbita maxima (Rimu)	cmameB298
MELO3C019431	Cucurbita maxima (Rimu)	cmameB691
MELO3C019431	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019431	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019431	Wild cucumber (PI 183967)	cpimeB241
MELO3C019431	Cucumber (Chinese Long) v2	cumeB166
MELO3C019431	Watermelon (Charleston Gray)	mewcgB427
MELO3C019431	Watermelon (97103) v1	mewmB461
MELO3C019431	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019431	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019431	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019431	Cucumber (Gy14) v2	cgybmeB210
MELO3C019431	Silver-seed gourd	carmeB0041
MELO3C019431	Silver-seed gourd	carmeB0651
MELO3C019431	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019431	Watermelon (97103) v2	mewmbB434