MELO3C019423 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019423
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent RNA helicase, putative
Location	chr6 : 9500381 .. 9501222 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAATGCATACAAGAAATGGGAAAAAGTTTTGCATCAGGTTAGATATCTTGTACTCTGTCCTTCATACGTAAAATCTCGTGTCAACTCTGCTCATTCAACCTCAACTTCAAAGGATAGTGATGAAGTTAAAATTGACAATAATTTTTCTTTTTCTTTTTGGCTTTGATGGTGATGCAAATTTGTTGATTACTACAAGAAATTGAAGTAATCCACGGTTTATAAGTTTTTTGTTCATTCGGGAGAATAGAACCCCAGTTATAAGCTAAGAGTAGATCTCTTAGCGGGTTTTCAGCATTTTTTGTATATCTGAGGCTCCGAGCAAAATACTGCTTTCCTGTTCTTCAATTTATATCTCCACATTGATTGATATTATCTCATGAGATCTTTATTTTTGCAGAAAGGAGCTAAAGCTGCACAGCAGTTCTGCAAATCATATTTCTTAAGCAGTTCGGTTATGCACATGATAAGGTACAATCTTTCACTGGTGATCTTTGACAATTACTTGAATCTGGTTGGTTGAACCGCAAACGTGTCAGTGGTTTTTATTTTCTAAATTTTTTTAACCTTCCTTTTTGCTCAATGCTTTCACATATTTTCAGGGACATGAGGGTACAGTTTGGGACATTGTTAGCAGACATTGGGCTTGTTGATCTTCCTAAAAGATCTCGTGTAAGTTATTTTAGGTGGCCACCTGGTGTACACCAAAGTCTCGGAGAATACTTGAATTCAATTATGGTTGATGATCTATCTAAATACAAACTGAACCATCCTTTAAATACGATCTCTGAACCACAAGCTGAAAAACAATCAGCTTTAACTACTAAAACAGCCAACTAA

mRNA sequence

ATGGTGAATGCATACAAGAAATGGGAAAAAGTTTTGCATCAGAAAGGAGCTAAAGCTGCACAGCAGTTCTGCAAATCATATTTCTTAAGCAGTTCGGTTATGCACATGATAAGGGACATGAGGGTACAGTTTGGGACATTGTTAGCAGACATTGGGCTTGTTGATCTTCCTAAAAGATCTCGTGTAAGTTATTTTAGGTGGCCACCTGGTGTACACCAAAGTCTCGGAGAATACTTGAATTCAATTATGGTTGATGATCTATCTAAATACAAACTGAACCATCCTTTAAATACGATCTCTGAACCACAAGCTGAAAAACAATCAGCTTTAACTACTAAAACAGCCAACTAA

Coding sequence (CDS)

ATGGTGAATGCATACAAGAAATGGGAAAAAGTTTTGCATCAGAAAGGAGCTAAAGCTGCACAGCAGTTCTGCAAATCATATTTCTTAAGCAGTTCGGTTATGCACATGATAAGGGACATGAGGGTACAGTTTGGGACATTGTTAGCAGACATTGGGCTTGTTGATCTTCCTAAAAGATCTCGTGTAAGTTATTTTAGGTGGCCACCTGGTGTACACCAAAGTCTCGGAGAATACTTGAATTCAATTATGGTTGATGATCTATCTAAATACAAACTGAACCATCCTTTAAATACGATCTCTGAACCACAAGCTGAAAAACAATCAGCTTTAACTACTAAAACAGCCAACTAA

Protein sequence

MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRSRVSYFRWPPGVHQSLGEYLNSIMVDDLSKYKLNHPLNTISEPQAEKQSALTTKTAN*

Homology

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BLAST of MELO3C019423 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-18
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            M+ AY KW K+L ++G KAAQ+FC+S FLSSSVM MIRDMRVQFGTLLADIGL++LPK  
Sbjct: 1200 MMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIGLINLPKTG 1259

Query: 61   RVS 64
              S
Sbjct: 1260 EFS 1262

[Close]

BLAST of MELO3C019423 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-16
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPK-- 60
            MV AY+KW ++LH++G KAA+ FC+S FL+SSVM M+R+ RV+FG LLADIGL++LPK  
Sbjct: 1167 MVVAYEKWVRILHEQGFKAAESFCESKFLNSSVMRMMRERRVEFGMLLADIGLINLPKGK 1226

Query: 61   -RSRVSYFRW------PPGVHQSLGEYLNSIMVDDLSKYKLNHPLNTISEPQAEKQ 108
             R + ++  W      P  ++    E + +I+   L        +N +++P  E Q
Sbjct: 1227 GRRKENFDVWFSDKTQPFNMYSQEPEVVKAILCAGLCPNIAEGLVNRLTKPAEETQ 1282

[Close]

BLAST of MELO3C019423 vs. TrEMBL
Match: A0A0A0L770_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228360 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-23
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1   MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
           MVNAYKKWEK+LHQKGAKAAQQFCKS+FLSSSVM+MIRDMRVQFGTLLADIGLVDLP RS
Sbjct: 187 MVNAYKKWEKILHQKGAKAAQQFCKSHFLSSSVMYMIRDMRVQFGTLLADIGLVDLPIRS 246

[Close]

BLAST of MELO3C019423 vs. TrEMBL
Match: K4B1U4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.8e-21
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            M+ AYKKWEK+L +KG KAA+QFC SYFLSSSVM+MIRDMRVQFGTLLADIGL++LPK+S
Sbjct: 1179 MMVAYKKWEKILREKGVKAAKQFCSSYFLSSSVMYMIRDMRVQFGTLLADIGLINLPKKS 1238

Query: 61   RVSYFRWPPGVHQSLGEYLNSI 83
             V + +      + LG +L+ I
Sbjct: 1239 EVDWKK-----KEKLGSWLSDI 1255

[Close]

BLAST of MELO3C019423 vs. TrEMBL
Match: F6HK50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            M+ AYKKWE++LH+KGAKAAQ FC SYFLSSSVMHMIRDMRVQFG LLADIGL+ LPK+ 
Sbjct: 1110 MMVAYKKWERILHEKGAKAAQHFCNSYFLSSSVMHMIRDMRVQFGNLLADIGLISLPKKY 1169

Query: 61   RVSYFRWPPGVHQSLGEYLNSIMVDDLSKYKLNHPLNTIS 101
            +         + +   E LNS   D      ++ P NT S
Sbjct: 1170 Q---------IERKKKENLNSWFSD------ISQPFNTYS 1194

[Close]

BLAST of MELO3C019423 vs. TrEMBL
Match: A5B1Z8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002615 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 1   MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
           M+ AYKKWE++LH+KGAKAAQ FC SYFLSSSVMHMIRDMRVQFG LLADIGL+ LPK+ 
Sbjct: 1   MMVAYKKWERILHEKGAKAAQHFCNSYFLSSSVMHMIRDMRVQFGNLLADIGLISLPKKY 60

Query: 61  RVSYFRWPPGVHQSLGEYLNSIMVDDLSKYKLNHPLNTIS 101
           +         + +   E LNS   D      ++ P NT S
Sbjct: 61  Q---------IERKKKENLNSWFSD------ISQPFNTYS 85

[Close]

BLAST of MELO3C019423 vs. TrEMBL
Match: A0A118JSE8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026515 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-19
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 1   MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
           M+ AYKKWEK+L + GAK A++FCKSYFLSSSVM+MIRDMRVQFGTLLADIGL+DLPK  
Sbjct: 187 MMIAYKKWEKILRENGAKDAERFCKSYFLSSSVMYMIRDMRVQFGTLLADIGLIDLPKNY 246

Query: 61  RV 63
           ++
Sbjct: 247 QI 248

[Close]

BLAST of MELO3C019423 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-19
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            M+ AY KW K+L ++G KAAQ+FC+S FLSSSVM MIRDMRVQFGTLLADIGL++LPK  
Sbjct: 1200 MMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGTLLADIGLINLPKTG 1259

Query: 61   RVS 64
              S
Sbjct: 1260 EFS 1262

[Close]

BLAST of MELO3C019423 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-17
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPK-- 60
            MV AY+KW ++LH++G KAA+ FC+S FL+SSVM M+R+ RV+FG LLADIGL++LPK  
Sbjct: 1167 MVVAYEKWVRILHEQGFKAAESFCESKFLNSSVMRMMRERRVEFGMLLADIGLINLPKGK 1226

Query: 61   -RSRVSYFRW------PPGVHQSLGEYLNSIMVDDLSKYKLNHPLNTISEPQAEKQ 108
             R + ++  W      P  ++    E + +I+   L        +N +++P  E Q
Sbjct: 1227 GRRKENFDVWFSDKTQPFNMYSQEPEVVKAILCAGLCPNIAEGLVNRLTKPAEETQ 1282

[Close]

BLAST of MELO3C019423 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.9e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS
Sbjct: 1224 MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 1283

Query: 61   R 62
            R
Sbjct: 1284 R 1284

[Close]

BLAST of MELO3C019423 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.9e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS
Sbjct: 1070 MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 1129

Query: 61   R 62
            R
Sbjct: 1130 R 1130

[Close]

BLAST of MELO3C019423 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            MVNAYKKWEK+LHQKGAKAAQQFCKS+FLSSSVM+MIRDMRVQFGTLLADIGLVDLP RS
Sbjct: 1070 MVNAYKKWEKILHQKGAKAAQQFCKSHFLSSSVMYMIRDMRVQFGTLLADIGLVDLPIRS 1129

[Close]

BLAST of MELO3C019423 vs. NCBI nr
Match: gi|700202475|gb|KGN57608.1| (hypothetical protein Csa_3G228360 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1   MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
           MVNAYKKWEK+LHQKGAKAAQQFCKS+FLSSSVM+MIRDMRVQFGTLLADIGLVDLP RS
Sbjct: 187 MVNAYKKWEKILHQKGAKAAQQFCKSHFLSSSVMYMIRDMRVQFGTLLADIGLVDLPIRS 246

[Close]

BLAST of MELO3C019423 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1    MVNAYKKWEKVLHQKGAKAAQQFCKSYFLSSSVMHMIRDMRVQFGTLLADIGLVDLPKRS 60
            MVNAYKKWEK+LHQKGAKAAQQFCKS+FLSSSVM+MIRDMRVQFGTLLADIGLVDLP RS
Sbjct: 1224 MVNAYKKWEKILHQKGAKAAQQFCKSHFLSSSVMYMIRDMRVQFGTLLADIGLVDLPIRS 1283

The following BLAST results are available for this feature:

BLAST of MELO3C019423 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEXH7_ARATH	5.9e-18	69.84	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana...	[more]
DEXH4_ARATH	5.5e-16	40.52	DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MELO3C019423 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L770_CUCSA	3.2e-23	93.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228360 PE=4 SV=1	[more]
K4B1U4_SOLLC	8.8e-21	64.63	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
F6HK50_VITVI	2.0e-20	57.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=...	[more]
A5B1Z8_VITVI	2.0e-20	57.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002615 PE=4 SV=1	[more]
A0A118JSE8_CYNCS	4.8e-19	75.81	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026515 PE=4 ...	[more]

BLAST of MELO3C019423 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G58060.1	3.3e-19	69.84	RNA helicase family protein	[more]
AT1G58050.1	3.1e-17	40.52	RNA helicase family protein	[more]

BLAST of MELO3C019423 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112040\|ref\|XP_008456036.1\|	5.9e-26	100.00	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo]	[more]
gi\|659112042\|ref\|XP_008456037.1\|	5.9e-26	100.00	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo]	[more]
gi\|778680315\|ref\|XP_011651288.1\|	4.7e-23	93.33	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus]	[more]
gi\|700202475\|gb\|KGN57608.1\|	4.7e-23	93.33	hypothetical protein Csa_3G228360 [Cucumis sativus]	[more]
gi\|778680313\|ref\|XP_011651287.1\|	4.7e-23	93.33	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019423T1	MELO3C019423T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 1..55 score: 7.7
None	No IPR available	PANTHER	PTHR18934:SF145	ATP-DEPENDENT RNA HELICASE DHX57-RELATED	coord: 1..55 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019423	Cucsa.032810	Cucumber (Gy14) v1	cgymeB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019423	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019423	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019423	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019423	Cucumber (Gy14) v2	cgybmeB210
MELO3C019423	Silver-seed gourd	carmeB0041
MELO3C019423	Silver-seed gourd	carmeB0651
MELO3C019423	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019423	Watermelon (97103) v2	mewmbB434
MELO3C019423	Wax gourd	mewgoB530
MELO3C019423	Cucurbita maxima (Rimu)	cmameB298
MELO3C019423	Cucurbita maxima (Rimu)	cmameB691
MELO3C019423	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019423	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019423	Wild cucumber (PI 183967)	cpimeB241
MELO3C019423	Cucumber (Chinese Long) v2	cumeB166
MELO3C019423	Watermelon (Charleston Gray)	mewcgB427
MELO3C019423	Watermelon (97103) v1	mewmB461