MELO3C019419 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019419
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent RNA helicase, putative
Location	chr6 : 9444262 .. 9444586 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACAATTTATGTCATCTTCTTTATGCCTTTGTACTATTTCATTCTTTCTTAGCGCAAGTGGTTTTTCATAGATAATGGTTAAAATGAATACAGGGTGATCCACTAAAGATTCCCAAGGCTGTTCTTCATCAATTATGTCAGAAAGAAGGATGGGATGCACCAAAATTTAATAAAATCCACAGAAAAGAAAATGGTTTTTTCTATGCTGTCAGTGTGCTGCGTAAAGCAAGTGGGAGAGGTAAAAATCGGAAAGCTGGAGGTCTTATCACTCTTCAGTTTCCCAATGAGGATGAAATTTTTGAATCTGCAGAGGTACTTTGA

mRNA sequence

ATGGGTGATCCACTAAAGATTCCCAAGGCTGTTCTTCATCAATTATGTCAGAAAGAAGGATGGGATGCACCAAAATTTAATAAAATCCACAGAAAAGAAAATGGTTTTTTCTATGCTGTCAGTGTGCTGCGTAAAGCAAGTGGGAGAGGTAAAAATCGGAAAGCTGGAGGTCTTATCACTCTTCAGTTTCCCAATGAGGATGAAATTTTTGAATCTGCAGAGGTACTTTGA

Coding sequence (CDS)

ATGGGTGATCCACTAAAGATTCCCAAGGCTGTTCTTCATCAATTATGTCAGAAAGAAGGATGGGATGCACCAAAATTTAATAAAATCCACAGAAAAGAAAATGGTTTTTTCTATGCTGTCAGTGTGCTGCGTAAAGCAAGTGGGAGAGGTAAAAATCGGAAAGCTGGAGGTCTTATCACTCTTCAGTTTCCCAATGAGGATGAAATTTTTGAATCTGCAGAGGTACTTTGA

Protein sequence

MGDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITLQFPNEDEIFESAEVL*

Homology

[Close]

BLAST of MELO3C019419 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.5e-22
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+  KIPKA LHQLCQ+ GW+APKFNK   +   F Y VS+LRKASGRGKNR+AGGL+TL
Sbjct: 405 GEAQKIPKAFLHQLCQRSGWEAPKFNKETGEGRNFSYTVSILRKASGRGKNRQAGGLVTL 464

Query: 62  QFPNEDEIFESAE 75
           Q P +DE FES E
Sbjct: 465 QLPPKDENFESIE 477

[Close]

BLAST of MELO3C019419 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+  KIPKA+LHQLCQ+ GW APKFNK+  +   F Y  SV+RK+SG GK+R+AGGL+T+
Sbjct: 390 GEAQKIPKALLHQLCQRSGWIAPKFNKVTGEGRNFSYTTSVMRKSSGFGKSRQAGGLVTI 449

Query: 62  QFPNEDEIFESAE 75
           Q P++ E FES +
Sbjct: 450 QLPHQVEDFESIQ 462

[Close]

BLAST of MELO3C019419 vs. TrEMBL
Match: B9SSN0_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-25
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GDP KIPKAVLHQLCQK GW+APKF K+H +  GF Y+VS+LRKASGRGK+RKAGGLITL
Sbjct: 405 GDPKKIPKAVLHQLCQKSGWEAPKFKKVHERRKGFSYSVSILRKASGRGKSRKAGGLITL 464

Query: 62  QFPNEDEIFESAE 75
           Q P++DE +ESAE
Sbjct: 465 QLPDQDETYESAE 477

[Close]

BLAST of MELO3C019419 vs. TrEMBL
Match: A0A067E9B9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0465321mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-25
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+P KIPKAVLHQLCQ+ GWDAPKFNK+  K N F YAVSVLRKASGRGK+RKAGGLITL
Sbjct: 187 GEPHKIPKAVLHQLCQRSGWDAPKFNKVTGKNNNFSYAVSVLRKASGRGKSRKAGGLITL 246

Query: 62  QFPNEDEIFESAEVL 77
           + P E E FES EVL
Sbjct: 247 ELPGEGETFESVEVL 261

[Close]

BLAST of MELO3C019419 vs. TrEMBL
Match: U5GH39_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s231601g PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.9e-25
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 2  GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
          GDP KIPKAVLHQLCQK GW+APKFNK+  +E GF YAVS+LRKASGRGK+RKAGGLI+L
Sbjct: 1  GDPQKIPKAVLHQLCQKSGWEAPKFNKVLERELGFSYAVSILRKASGRGKSRKAGGLISL 60

Query: 62 QFPNEDEIFESAE 75
          Q P++D+ FESAE
Sbjct: 61 QLPDQDDTFESAE 73

[Close]

BLAST of MELO3C019419 vs. TrEMBL
Match: A0A067L1X0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00219 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.1e-25
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GDP KIPKAVLHQLCQK GWDAPKFNK+  +  GF Y+VS+LRKASGRGK+RKAGGLITL
Sbjct: 408 GDPHKIPKAVLHQLCQKSGWDAPKFNKVLERREGFLYSVSILRKASGRGKSRKAGGLITL 467

Query: 62  QFPNEDEIFESAE 75
           Q P+ DE +ESAE
Sbjct: 468 QLPDWDETYESAE 480

[Close]

BLAST of MELO3C019419 vs. TrEMBL
Match: V4T5X0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-24
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+P KIPKAVLHQLCQ+ GWDAPKFNK+  K N F YAVSVLRKASGRGK+RKAGGLITL
Sbjct: 403 GEPHKIPKAVLHQLCQRSGWDAPKFNKVTGKNNNFSYAVSVLRKASGRGKSRKAGGLITL 462

Query: 62  QFPNEDEIFESAE 75
           + P E E FES E
Sbjct: 463 ELPGEGETFESVE 475

[Close]

BLAST of MELO3C019419 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 104.0 bits (258), Expect = 4.2e-23
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+  KIPKA LHQLCQ+ GW+APKFNK   +   F Y VS+LRKASGRGKNR+AGGL+TL
Sbjct: 405 GEAQKIPKAFLHQLCQRSGWEAPKFNKETGEGRNFSYTVSILRKASGRGKNRQAGGLVTL 464

Query: 62  QFPNEDEIFESAE 75
           Q P +DE FES E
Sbjct: 465 QLPPKDENFESIE 477

[Close]

BLAST of MELO3C019419 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 93.2 bits (230), Expect = 7.5e-20
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           G+  KIPKA+LHQLCQ+ GW APKFNK+  +   F Y  SV+RK+SG GK+R+AGGL+T+
Sbjct: 390 GEAQKIPKALLHQLCQRSGWIAPKFNKVTGEGRNFSYTTSVMRKSSGFGKSRQAGGLVTI 449

Query: 62  QFPNEDEIFESAE 75
           Q P++ E FES +
Sbjct: 450 QLPHQVEDFESIQ 462

[Close]

BLAST of MELO3C019419 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL
Sbjct: 432 GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 491

Query: 62  QFPNEDEIFESAE 75
           QFPNEDEIFESAE
Sbjct: 492 QFPNEDEIFESAE 504

[Close]

BLAST of MELO3C019419 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL
Sbjct: 278 GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 337

Query: 62  QFPNEDEIFESAE 75
           QFPNEDEIFESAE
Sbjct: 338 QFPNEDEIFESAE 350

[Close]

BLAST of MELO3C019419 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.6e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GD LKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL
Sbjct: 278 GDTLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 337

Query: 62  QFPNEDEIFESAE 75
           QFPNEDEIFESAE
Sbjct: 338 QFPNEDEIFESAE 350

[Close]

BLAST of MELO3C019419 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.6e-34
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GD LKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL
Sbjct: 432 GDTLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 491

Query: 62  QFPNEDEIFESAE 75
           QFPNEDEIFESAE
Sbjct: 492 QFPNEDEIFESAE 504

[Close]

BLAST of MELO3C019419 vs. NCBI nr
Match: gi|1000946951|ref|XP_015580753.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [Ricinus communis])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-25
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 2   GDPLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 61
           GDP KIPKAVLHQLCQK GW+APKF K+H +  GF Y+VS+LRKASGRGK+RKAGGLITL
Sbjct: 405 GDPKKIPKAVLHQLCQKSGWEAPKFKKVHERRKGFSYSVSILRKASGRGKSRKAGGLITL 464

Query: 62  QFPNEDEIFESAE 75
           Q P++DE +ESAE
Sbjct: 465 QLPDQDETYESAE 477

The following BLAST results are available for this feature:

BLAST of MELO3C019419 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEXH7_ARATH	7.5e-22	67.12	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana...	[more]
DEXH4_ARATH	1.3e-18	57.53	DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MELO3C019419 vs. TrEMBL


Match Name	E-value	Identity	Description
B9SSN0_RICCO	1.3e-25	75.34	ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1374260 PE=4 SV...	[more]
A0A067E9B9_CITSI	3.9e-25	77.33	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0465321mg PE=4 ...	[more]
U5GH39_POPTR	3.9e-25	76.71	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s231601g ...	[more]
A0A067L1X0_JATCU	5.1e-25	76.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00219 PE=4 SV=1	[more]
V4T5X0_9ROSI	3.3e-24	76.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v100000301mg PE=4 SV=1	[more]

BLAST of MELO3C019419 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G58060.1	4.2e-23	67.12	RNA helicase family protein	[more]
AT1G58050.1	7.5e-20	57.53	RNA helicase family protein	[more]

BLAST of MELO3C019419 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112040\|ref\|XP_008456036.1\|	1.0e-34	100.00	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo]	[more]
gi\|659112042\|ref\|XP_008456037.1\|	1.0e-34	100.00	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo]	[more]
gi\|778680315\|ref\|XP_011651288.1\|	8.6e-34	98.63	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus]	[more]
gi\|778680313\|ref\|XP_011651287.1\|	8.6e-34	98.63	PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus]	[more]
gi\|1000946951\|ref\|XP_015580753.1\|	1.9e-25	75.34	PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X2 [...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019419T1	MELO3C019419T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 8..54 score: 5.
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 4..55 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019419	Cla004303	Watermelon (97103) v1	mewmB461
MELO3C019419	ClCG05G009410	Watermelon (Charleston Gray)	mewcgB427
MELO3C019419	Cla97C05G091760	Watermelon (97103) v2	mewmbB434
MELO3C019419	Bhi01G001180	Wax gourd	mewgoB530
MELO3C019419	CSPI03G19260	Wild cucumber (PI 183967)	cpimeB241
MELO3C019419	Cucsa.032720	Cucumber (Gy14) v1	cgymeB002
MELO3C019419	CmaCh16G003920	Cucurbita maxima (Rimu)	cmameB298
MELO3C019419	CmoCh16G004250	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019419	Lsi05G001510	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019419	Cp4.1LG14g03830	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019419	CsGy3G019160	Cucumber (Gy14) v2	cgybmeB210
MELO3C019419	Carg11324	Silver-seed gourd	carmeB0651
MELO3C019419	CsaV3_3G019320	Cucumber (Chinese Long) v3	cucmeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019419	Silver-seed gourd	carmeB0041
MELO3C019419	Cucurbita maxima (Rimu)	cmameB691
MELO3C019419	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019419	Cucumber (Chinese Long) v2	cumeB166
MELO3C019419	Cucurbita pepo (Zucchini)	cpemeB412