MELO3C019388 (gene) Melon (DHL92) v3.5.1

NameMELO3C019388
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosome-releasing factor 2, mitochondrial
Locationchr6 : 9003756 .. 9004487 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACACTCGAAAGGGTACTTATGCGGCGAAGTCTTCTAAAGACGTTCTTGAAACTCAAATTTTGAAGACATCCATGCATGGTGTGAGTATTGGAGGTCTTCGTTTCAAAAGTACTCCACTACAGAGACCTTATCGCCTTTTGTTAGAAAAATCACAGGCACATGTTTTCGACAGACTTTATGAGCCTGTGCAAGACGATGTTGATTCTCGAAATCCTGCGACAAATACTGAACATGCACCAGGTGCTCCTGAGAGTCATATGTCCAATATGGATTCAGATGACCTAGATGATGTTCCACTAGCCCGATTGTTAAAGAAGAATTTTGTTCTTGATGTTGTAGCTGAAAAATATATTGATCCTCCTATATCAGTTCATTCTTAGGAAAGCTCGTCTACTGAAGGTGTGTTTGTTCCTACCCCTAGCCTTCAACATACTTCAAATGTTGAACCAGGTCCATCACTTTACTCCTCTCCAGTTAGATCTTCCATTCCAAAAAATACTACTACATCTGGTCCGCATAATGACTCTGCACCTGCTTTTGCTGATGAGTCCATTGCAACCGAGGGAAGGACTGATGTTCATAATGGTGAAGACGAGGTTGAACCTGCCAATATTGGCGATCATACTGGTGAGATCTCCATTGATGACAATAATAACCCAGCTGCTCAACCTGAGACTCATGCATTTCTTGAGGAATCCAGGCCAACAAAGAAGAAATTTCAGTAG

mRNA sequence

ATGGTGAACACTCGAAAGGGTACTTATGCGGCGAAGTCTTCTAAAGACGTTCTTGAAACTCAAATTTTGAAGACATCCATGCATGGTGTGAGTATTGGAGGTCTTCGTTTCAAAAGTACTCCACTACAGAGACCTTATCGCCTTTTGTTAGAAAAATCACAGGCACATGTTTTCGACAGACTTTATGAGCCTGTGCAAGACGATGTTGATTCTCGAAATCCTGCGACAAATACTGAACATGCACCAGGTCCATCACTTTACTCCTCTCCAGTTAGATCTTCCATTCCAAAAAATACTACTACATCTGGTCCGCATAATGACTCTGCACCTGCTTTTGCTGATGAGTCCATTGCAACCGAGGGAAGGACTGATGTTCATAATGGTGAAGACGAGGTTGAACCTGCCAATATTGGCGATCATACTGGTGAGATCTCCATTGATGACAATAATAACCCAGCTGCTCAACCTGAGACTCATGCATTTCTTGAGGAATCCAGGCCAACAAAGAAGAAATTTCAGTAG

Coding sequence (CDS)

ATGGTGAACACTCGAAAGGGTACTTATGCGGCGAAGTCTTCTAAAGACGTTCTTGAAACTCAAATTTTGAAGACATCCATGCATGGTGTGAGTATTGGAGGTCTTCGTTTCAAAAGTACTCCACTACAGAGACCTTATCGCCTTTTGTTAGAAAAATCACAGGCACATGTTTTCGACAGACTTTATGAGCCTGTGCAAGACGATGTTGATTCTCGAAATCCTGCGACAAATACTGAACATGCACCAGGTCCATCACTTTACTCCTCTCCAGTTAGATCTTCCATTCCAAAAAATACTACTACATCTGGTCCGCATAATGACTCTGCACCTGCTTTTGCTGATGAGTCCATTGCAACCGAGGGAAGGACTGATGTTCATAATGGTGAAGACGAGGTTGAACCTGCCAATATTGGCGATCATACTGGTGAGATCTCCATTGATGACAATAATAACCCAGCTGCTCAACCTGAGACTCATGCATTTCTTGAGGAATCCAGGCCAACAAAGAAGAAATTTCAGTAG

Protein sequence

MVNTRKGTYAAKSSKDVLETQILKTSMHGVSIGGLRFKSTPLQRPYRLLLEKSQAHVFDRLYEPVQDDVDSRNPATNTEHAPGPSLYSSPVRSSIPKNTTTSGPHNDSAPAFADESIATEGRTDVHNGEDEVEPANIGDHTGEISIDDNNNPAAQPETHAFLEESRPTKKKFQ*
BLAST of MELO3C019388 vs. TrEMBL
Match: E5GBC0_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37
Identity = 105/219 (47.95%), Postives = 122/219 (55.71%), Query Frame = 1

Query: 1   MVNTRKGTYAAKSSKDVLETQILKTSMHGVS-------------------IGGLRFKSTP 60
           M+NTRKGTY AKSS+D LE QIL TSMHG +                          S P
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHGANVSTRLHKLVPNDVNSQNPTTNAEHEPSAP 60

Query: 61  LQRPYRL----LLEKSQAHVFDRLYEP-------VQDDVDSRN-----------PATNTE 120
               Y +    L +   A +  + Y P       +   V S +           P    +
Sbjct: 61  KTHMYDMDSNDLDDVRLARLLKKTYVPNVAAGNSIDPSVSSHSQESSSTEGVFVPTPGVQ 120

Query: 121 HAP----GPSLYSSPVRSSIPKNTTTSGPHNDSAPAFADESIATEGRTDVHNGEDE-VEP 174
           H      GPSLYSSPVRSS+P +TTTSG +N+SAPA ADES  TEGRTDVHN EDE +EP
Sbjct: 121 HTSNFKLGPSLYSSPVRSSVP-DTTTSGLNNNSAPAPADESATTEGRTDVHNDEDEIIEP 180

BLAST of MELO3C019388 vs. NCBI nr
Match: gi|307135897|gb|ADN33761.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.2e-37
Identity = 105/219 (47.95%), Postives = 122/219 (55.71%), Query Frame = 1

Query: 1   MVNTRKGTYAAKSSKDVLETQILKTSMHGVS-------------------IGGLRFKSTP 60
           M+NTRKGTY AKSS+D LE QIL TSMHG +                          S P
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHGANVSTRLHKLVPNDVNSQNPTTNAEHEPSAP 60

Query: 61  LQRPYRL----LLEKSQAHVFDRLYEP-------VQDDVDSRN-----------PATNTE 120
               Y +    L +   A +  + Y P       +   V S +           P    +
Sbjct: 61  KTHMYDMDSNDLDDVRLARLLKKTYVPNVAAGNSIDPSVSSHSQESSSTEGVFVPTPGVQ 120

Query: 121 HAP----GPSLYSSPVRSSIPKNTTTSGPHNDSAPAFADESIATEGRTDVHNGEDE-VEP 174
           H      GPSLYSSPVRSS+P +TTTSG +N+SAPA ADES  TEGRTDVHN EDE +EP
Sbjct: 121 HTSNFKLGPSLYSSPVRSSVP-DTTTSGLNNNSAPAPADESATTEGRTDVHNDEDEIIEP 180

BLAST of MELO3C019388 vs. NCBI nr
Match: gi|659133588|ref|XP_008466805.1| (PREDICTED: uncharacterized protein LOC103504128 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 4.5e-22
Identity = 82/199 (41.21%), Postives = 99/199 (49.75%), Query Frame = 1

Query: 1   MVNTRKGTYAAKSSKDVLETQILKTSMHGVSIGGLRFKSTPLQRPYRLLLEKSQAHVFDR 60
           MVNTRKGTY  KSSK+V E    K +MHG       F+        R  +   +AH+ D 
Sbjct: 1   MVNTRKGTYTGKSSKEVHEAPSPKATMHGPVQEDAGFEGAAKDAKTRSSV--FEAHLSDM 60

Query: 61  LYEPVQD---------DVDSRN---PATNTEHA----PGPSLYSSPVRSSIPKNTTTSGP 120
            ++ + D            S+    P     H     P PS YSSP+RSSIP  TTT+  
Sbjct: 61  DFDDLDDIPLALHSQGSSSSKGVFIPTPGFHHTSVIEPIPSHYSSPIRSSIPDKTTTTDS 120

Query: 121 HNDSAPAFADESIATEGRTDVHNGE------DEVEPANIGDHTGEISIDDNNNPAA---- 174
           H D A A  DES+ATEGRTDV + E      D VE  N  DH  + SIDDN +  A    
Sbjct: 121 HVDLARASVDESVATEGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHNDS 180

BLAST of MELO3C019388 vs. NCBI nr
Match: gi|659126982|ref|XP_008463460.1| (PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 3.7e-16
Identity = 61/173 (35.26%), Postives = 84/173 (48.55%), Query Frame = 1

Query: 1   MVNTRKGTYAAKSSKDVLETQILKTSMHGVSIGGLRFKSTPLQRPYRLLLEKSQAHVFDR 60
           MVNTRKGTY  KSS++VLE    K ++HG+ +   RFKST  +RPY+L  +KS A +   
Sbjct: 1   MVNTRKGTYTDKSSEEVLEAPSPKATVHGIRVRERRFKSTLPRRPYKLPSKKSHADI--- 60

Query: 61  LYEPVQDDVDSRNPATNTEHAPGPSLYSSPVRSSIPKNTTTSGPHNDSAPAFADESIATE 120
                 DD+D    A   +    P        S IP N  ++ PH            A  
Sbjct: 61  --PTNSDDLDDIPLAQLLKKVAAPD-------SPIPDNIASTDPH------------AAL 120

Query: 121 GRTDVHNGEDEVEPANIGDHTGEISIDDNNNPAAQPETHAFLEESRPTKKKFQ 174
              +    ED VEP N  DH  E+ +DDN + +   ET +   E +P++KK Q
Sbjct: 121 NVVEPVGNEDVVEPVNTDDHNDEVPVDDNVDQSTHQETQSVPTEPKPSRKKVQ 149

BLAST of MELO3C019388 vs. NCBI nr
Match: gi|659127352|ref|XP_008463658.1| (PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 65/180 (36.11%), Postives = 85/180 (47.22%), Query Frame = 1

Query: 34  GLRFKSTPLQRPYRLLLEKSQAHVFDRLYEPVQDDVDSRNPATNTEHAP----------- 93
           G RFK+TP +RPYRL  EKSQA V  RL E + + VDS NP +++ HAP           
Sbjct: 3   GRRFKNTPPRRPYRLPSEKSQAEVSSRLSESMPETVDSPNPTSSSSHAPNIPETIVSDMD 62

Query: 94  -----------------------------GPSLYSSPVRSSIPKNTTTSGPHNDSAPAFA 153
                                        GPS++S  +RS I +    S P+   A    
Sbjct: 63  SNDLDDESSSTEGVFVPTPGIHHTSNIQPGPSIHSPFIRSPISE-PLPSKPNTAHAIVPG 122

Query: 154 DESIATEGRTDVHNGEDEVEPANIGDHTGEISIDDNNNPAAQPETHAFLEESRPTKKKFQ 174
           + SI    RTDV+N EDE+ P N   H+ E S   +NN  A P ++A   ES+P KKK Q
Sbjct: 123 EVSIEPLVRTDVYNDEDELNPPNPKVHSEEFSDVADNNLTASPASYAIPVESQPAKKKSQ 181

BLAST of MELO3C019388 vs. NCBI nr
Match: gi|659123177|ref|XP_008461533.1| (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 7.7e-14
Identity = 69/201 (34.33%), Postives = 96/201 (47.76%), Query Frame = 1

Query: 1   MVNTRKGTYAAKSSKDVLETQILKTSMHGVSIGGLRFKSTPLQRPYRLLLEKSQAHV--- 60
           MVNTRKGTY  KSS++VL+    + ++H   + G RFKSTPLQR Y+L  EKS A +   
Sbjct: 1   MVNTRKGTYTDKSSEEVLKAPSSRAAVH--EVRGRRFKSTPLQRSYKLPSEKSHADIPTN 60

Query: 61  FD--------RLYEPV-------QDDVDSRNPATNTEHAPGPSLYSSPVRSSIPKNTTTS 120
           FD        RL + V       +  VD      + E +P   ++  P       ++   
Sbjct: 61  FDDLDDVPLARLLKKVAAPDVFLEKSVDLVLSVHSQESSPSEGVF-VPTPGLRQTSSIEP 120

Query: 121 GPHNDSAP---------AFADESIA-TEGRTDVHNGEDEVEPANIGDHTGEISIDDNNNP 174
           GP + S P         A  D   A  E   +    ED VEP +  DH  E+ +DDN + 
Sbjct: 121 GPSHYSPPIQWPILDNIASTDPHAAPVEDVVEPVCNEDVVEPVDTDDHNDEVPVDDNVDQ 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBC0_CUCME1.5e-3747.95Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135897|gb|ADN33761.1|2.2e-3747.95hypothetical protein [Cucumis melo subsp. melo][more]
gi|659133588|ref|XP_008466805.1|4.5e-2241.21PREDICTED: uncharacterized protein LOC103504128 [Cucumis melo][more]
gi|659126982|ref|XP_008463460.1|3.7e-1635.26PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo][more]
gi|659127352|ref|XP_008463658.1|2.4e-1536.11PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo][more]
gi|659123177|ref|XP_008461533.1|7.7e-1434.33PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019388T1MELO3C019388T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None