MELO3C019387 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019387
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Monofunctional isopimaradiene synthase, chloroplastic
Location	chr6 : 8985989 .. 8986747 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACACTCGTAAGGGAAATTATGCAGCTAAATCATCTAAAGAAGTTCATGATGCTCTAGCTTTAAAGTCCGCCATGCATGGTGTGAGAATGAGAGGTCGTTGTTTCAAAGGTACTCCACCGCGAAAACCCTACCGGCTTCCGTTAGAAAAATTTCAGGCTCATGTCTCTGAAAGCTCTCATATGCCTGTGCAAGATGATGTTGGTACTGGAAGTGCTGTGAAAGATGCTGAAATTGCTCTTAGTGTCTCAGAGACTCATATCTCCGACATGGATTCTGATGACCTAGATAATGTTCCACTAGCTAGACTGATGAAGAAGAATTCTGTTCCTGGTGTTGCGGCTGAAAAATCTATTGATTCTATTGTATCAATTCATTCTCAAGAAAGCTCGTCTTCTGAAGGTGTGTTTGTTTCTATTAATGGCCTTCATATTCAGGTACGTGCTTCCAATGTAGAGCCTGGTCCATCACATCACTCTTCACCAATTAGGTCATCTGTTCCAGACAATGTTTCTACATCTAATACAGATGTTGAACCTACACCTTCTTTTCTGCTGAATCTCTTGCGTTTAAAGGATGGACTGATGAATCCTCTACTAATGATGAAGACGTTGTTGAACCTGTCAACACTGGCGTCCACGATGATGAGATCCTTATTAATGAAAATGTTGCACCAGATGTTCATAATGATTCTCAACCTGAGACTTATCTTTTTCCCTAAAGTATCCAAGCCAACCAGGAAGAAATTTCAGTAG

mRNA sequence

ATGGTGAACACTCGTAAGGGAAATTATGCAGCTAAATCATCTAAAGAAGTTCATGATGCTCTAGCTTTAAAGTCCGCCATGCATGGTGTGAGAATGAGAGGTCGTTGTTTCAAAGGTACTCCACCGCGAAAACCCTACCGGCTTCCGTTAGAAAAATTTCAGGCTCATGTCTCTGAAAGCTCTCATATGCCTGTGCAAGATGATGTTGGTACTGGAAGTGCTGTGAAAGATGCTGAAATTGCTCTTAGTGTCTCAGAGACTCATATCTCCGACATGGATTCTGATGACCTAGATAATGTTCCACTAGCTAGACTGATGAAGAAGAATTCTGTTCCTGGTGTTGCGGCTGAAAAATCTATTGATTCTATTGTATCAATTCATTCTCAAGAAAGCTCGTCTTCTGAAGGTGTGTTTGTTTCTATTAATGGCCTTCATATTCAGGTACGTGCTTCCAATGTAGAGCCTGGTCCATCACATCACTCTTCACCAATTAGGTCATCTGTTCCAGACAATGTTTCTACATCTAATACAGATGTTGAACCTACACCTTCTTTTCTGCTGAATCTCTTGCGTTTAAAGGATGGACTGATGAATCCTCTACTAATGATGAAGACGTTGTTGAACCTGTCAACACTGGCGTCCACGATGATGAGATCCTTATTAATGAAAATGTTGCACCAGATGTTCATAATGATTCTCAACCTGAGACTTATCTTTTTCCCTAAAGTATCCAAGCCAACCAGGAAGAAATTTCAGTAG

Coding sequence (CDS)

ATGGTGAACACTCGTAAGGGAAATTATGCAGCTAAATCATCTAAAGAAGTTCATGATGCTCTAGCTTTAAAGTCCGCCATGCATGGTGTGAGAATGAGAGGTCGTTGTTTCAAAGGTACTCCACCGCGAAAACCCTACCGGCTTCCGTTAGAAAAATTTCAGGCTCATGTCTCTGAAAGCTCTCATATGCCTGTGCAAGATGATGTTGGTACTGGAAGTGCTGTGAAAGATGCTGAAATTGCTCTTAGTGTCTCAGAGACTCATATCTCCGACATGGATTCTGATGACCTAGATAATGTTCCACTAGCTAGACTGATGAAGAAGAATTCTGTTCCTGGTGTTGCGGCTGAAAAATCTATTGATTCTATTGTATCAATTCATTCTCAAGAAAGCTCGTCTTCTGAAGGTGTGTTTGTTTCTATTAATGGCCTTCATATTCAGGTACGTGCTTCCAATGTAGAGCCTGGTCCATCACATCACTCTTCACCAATTAGGTCATCTGTTCCAGACAATGTTTCTACATCTAATACAGATGTTGAACCTACACCTTCTTTTCTGCTGAATCTCTTGCGTTTAAAGGATGGACTGATGAATCCTCTACTAATGATGAAGACGTTGTTGAACCTGTCAACACTGGCGTCCACGATGATGAGATCCTTATTAATGAAAATGTTGCACCAGATGTTCATAATGATTCTCAACCTGAGACTTATCTTTTTCCCTAAAGTATCCAAGCCAACCAGGAAGAAATTTCAGTAG

Protein sequence

MVNTRKGNYAAKSSKEVHDALALKSAMHGVRMRGRCFKGTPPRKPYRLPLEKFQAHVSESSHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVAAEKSIDSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSVPDNVSTSNTDVEPTPSFLLNLLRLKDGLMNPLLMMKTLLNLSTLASTMMRSLLMKMLHQMFIMILNLRLIFFPKVSKPTRKKFQ*

Homology

[Close]

BLAST of MELO3C019387 vs. TrEMBL
Match: E5GBC0_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.1e-27
Identity = 82/185 (44.32%), Postives = 107/185 (57.84%), Query Frame = 1


Query: 1   MVNTRKGNYAAKSSKEVHDALALKSAMHGVRMRGRCFKGTPPRKPYRLPLEKFQAHVSES 60
           M+NTRKG Y AKSS++  +A  L ++MHG                         A+VS  
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHG-------------------------ANVSTR 60

Query: 61  SHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVAAEKSI 120
            H  V +DV + +   +AE   S  +TH+ DMDS+DLD+V LARL+KK  VP VAA  SI
Sbjct: 61  LHKLVPNDVNSQNPTTNAEHEPSAPKTHMYDMDSNDLDDVRLARLLKKTYVPNVAAGNSI 120

Query: 121 DSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSVPDNVSTS-NTDV 180
           D  VS HSQESSS+EGVFV   G+      SN + GPS +SSP+RSSVPD  ++  N + 
Sbjct: 121 DPSVSSHSQESSSTEGVFVPTPGVQ---HTSNFKLGPSLYSSPVRSSVPDTTTSGLNNNS 157

Query: 181 EPTPS 185
            P P+
Sbjct: 181 APAPA 157

[Close]

BLAST of MELO3C019387 vs. TrEMBL
Match: E5GCP1_CUCME (Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 92  MDSDDLDNVPLARLMKKNSVPGVAAEKSIDSIVSIHSQESSSSEGVFVSINGLHIQVRAS 151
           MDSDDLD+VPLA  +KK ++P V  E      VSIHSQESSS+E VFV    +      S
Sbjct: 1   MDSDDLDDVPLAHFLKKTTIPDVVVEMPTTPSVSIHSQESSSTEEVFVPKPSIQ---HTS 60

Query: 152 NVEPGPSHHSSPIRSSVPDNVSTSNTDV 180
           NV+PGPS   SP   S       S T++
Sbjct: 61  NVQPGPSIIHSPFVHSPISEPLPSETNI 85

[Close]

BLAST of MELO3C019387 vs. NCBI nr
Match: gi|659109747|ref|XP_008454855.1| (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 80/182 (43.96%), Postives = 114/182 (62.64%), Query Frame = 1


Query: 1   MVNTRKGNYAAKSSKEVHDALALKSAMHGVRMRGRCFKGTPPRKPYRLPLEKFQAHVSES 60
           MVNTRKG Y  KS+KEV +  + ++ +HG+R+ G+ FK T PR+PY+LP EK  A++S  
Sbjct: 1   MVNTRKGTY--KSTKEVPEPPSPRAVVHGIRVHGQRFKSTLPRRPYKLPSEKAHAYISSG 60

Query: 61  SHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVAAEKSI 120
           S   + ++V  G+ +KDAE A + SE H+S+MDSDDLD+VPLARL+KK + P    +   
Sbjct: 61  SFELIHEEVVYGNVMKDAETAPAASEAHLSNMDSDDLDDVPLARLVKKVTAPNAVPKNVN 120

Query: 121 DSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSVPDNVSTSNTDVE 180
           D+++S  SQESSSSEGVFV   GL        V     H +  + SS        +T+ +
Sbjct: 121 DNVLSDQSQESSSSEGVFVPTPGLRQMDHNEEV-----HVADSVDSSAQQETPLVSTEPK 175

Query: 181 PT 183
           P+
Sbjct: 181 PS 175

[Close]

BLAST of MELO3C019387 vs. NCBI nr
Match: gi|659113921|ref|XP_008456819.1| (PREDICTED: uncharacterized protein LOC103496657 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-29
Identity = 79/170 (46.47%), Postives = 110/170 (64.71%), Query Frame = 1


Query: 43  RKPYRLPLEKFQAHVSESSHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPL 102
           R+PY+LP EK  A++   S   V +++ +G+A+KD E AL VSE H+ DMDSDDLD+VP 
Sbjct: 13  RRPYKLPSEKAHANIPSGSTESVHEEIVSGNAMKDVETALVVSEAHLFDMDSDDLDDVPP 72

Query: 103 ARLMKKNSVPGVAAEKSIDSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSS 162
           ARL+KK + P V  EK  + ++S HSQESSSSEGVFV  +GL    + S VEP PS +SS
Sbjct: 73  ARLVKKVTAPDVVPEKFANHVLSDHSQESSSSEGVFVPTSGLR---QTSFVEPRPSLYSS 132

Query: 163 PIRSSVPDNVSTSNTDVEPTPSFLLNLLRLKDGLMNPLLMMKTLLNLSTL 213
           PI+S + +  + S+    P  +  +    LK  +  PLL+M T+L+L  L
Sbjct: 133 PIQSPISNIAAPSDPHAAPPVASSVPKGGLKLKVKKPLLIMSTVLSLLLL 179

[Close]

BLAST of MELO3C019387 vs. NCBI nr
Match: gi|659082042|ref|XP_008441636.1| (PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 83/182 (45.60%), Postives = 101/182 (55.49%), Query Frame = 1


Query: 2   VNTRKGNYAAKSSKEVHDALALKSAMHGVRMRGRCFKGTPPRKPYRLPLEKFQAHVSESS 61
           VNTRKGNY AK  +  H+  A KS MHGVR+                       HV+E  
Sbjct: 30  VNTRKGNYQAKLPEVDHEVPASKSTMHGVRIY----------------------HVTE-- 89

Query: 62  HMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVAAEKSID 121
                DDV TGSA K  E A SVSETHISDMD D+ D+V LARL+KK     V   KS+D
Sbjct: 90  ----HDDVATGSAAKGVENAPSVSETHISDMDLDEQDDVLLARLLKKGVASNVVPTKSVD 149

Query: 122 SIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSVPDNVSTSNTDVEP 181
            ++S HSQ+SSSS+ VFV   GL+     SN +PGPS    P+RS + + V  SN  +E 
Sbjct: 150 LVISAHSQKSSSSQDVFVPTLGLY---HVSNEKPGPSRRLPPVRSLILNVVPISNPHLES 180

Query: 182 TP 184
            P
Sbjct: 210 RP 180

[Close]

BLAST of MELO3C019387 vs. NCBI nr
Match: gi|307135897|gb|ADN33761.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 129.4 bits (324), Expect = 8.8e-27
Identity = 82/185 (44.32%), Postives = 107/185 (57.84%), Query Frame = 1


Query: 1   MVNTRKGNYAAKSSKEVHDALALKSAMHGVRMRGRCFKGTPPRKPYRLPLEKFQAHVSES 60
           M+NTRKG Y AKSS++  +A  L ++MHG                         A+VS  
Sbjct: 1   MMNTRKGTYVAKSSEDGLEAQILTTSMHG-------------------------ANVSTR 60

Query: 61  SHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVAAEKSI 120
            H  V +DV + +   +AE   S  +TH+ DMDS+DLD+V LARL+KK  VP VAA  SI
Sbjct: 61  LHKLVPNDVNSQNPTTNAEHEPSAPKTHMYDMDSNDLDDVRLARLLKKTYVPNVAAGNSI 120

Query: 121 DSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSVPDNVSTS-NTDV 180
           D  VS HSQESSS+EGVFV   G+      SN + GPS +SSP+RSSVPD  ++  N + 
Sbjct: 121 DPSVSSHSQESSSTEGVFVPTPGVQ---HTSNFKLGPSLYSSPVRSSVPDTTTSGLNNNS 157

Query: 181 EPTPS 185
            P P+
Sbjct: 181 APAPA 157

[Close]

BLAST of MELO3C019387 vs. NCBI nr
Match: gi|659083317|ref|XP_008442287.1| (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26
Identity = 75/139 (53.96%), Postives = 90/139 (64.75%), Query Frame = 1


Query: 56  HVSESSHMPVQDDVGTGSAVKDAEIALSVSETHISDMDSDDLDNVPLARLMKKNSVPGVA 115
           HVSES H+PV +++   SAVK AE A SVSETH+S+MD DDLD++PLARL+KK+    VA
Sbjct: 22  HVSESFHVPVHEEIVVKSAVKSAENAPSVSETHVSNMDLDDLDDIPLARLLKKSYASEVA 81

Query: 116 AEKSIDSIVSIHSQESSSSEGVFVSINGLHIQVRASNVEPGPSHHSSPIRSSV------- 175
             K  D I+S HSQ+SSSSE VFV   GLH    ASNVEPGPS HS   R+ V       
Sbjct: 82  LAKPTDPIISAHSQKSSSSEDVFVPTPGLH---HASNVEPGPSQHSPSGRTRVSADEALV 141

Query: 176 ------PDNVSTSNTDVEP 182
                 P N  T+NT +EP
Sbjct: 142 HVEGVKPTNTDTTNT-IEP 156

The following BLAST results are available for this feature:

BLAST of MELO3C019387 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBC0_CUCME	6.1e-27	44.32	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP1_CUCME	1.5e-09	47.73	Envelope-like protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C019387 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109747\|ref\|XP_008454855.1\|	2.6e-31	43.96	PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo]	[more]
gi\|659113921\|ref\|XP_008456819.1\|	3.2e-29	46.47	PREDICTED: uncharacterized protein LOC103496657 [Cucumis melo]	[more]
gi\|659082042\|ref\|XP_008441636.1\|	3.0e-27	45.60	PREDICTED: uncharacterized protein LOC103485716 [Cucumis melo]	[more]
gi\|307135897\|gb\|ADN33761.1\|	8.8e-27	44.32	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659083317\|ref\|XP_008442287.1\|	2.6e-26	53.96	PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019387T1	MELO3C019387T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019387	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019387	Watermelon (97103) v2	mewmbB434
MELO3C019387	Wax gourd	mewgoB530
MELO3C019387	Cucumber (Gy14) v1	cgymeB002
MELO3C019387	Wild cucumber (PI 183967)	cpimeB241
MELO3C019387	Cucumber (Chinese Long) v2	cumeB166
MELO3C019387	Watermelon (Charleston Gray)	mewcgB427
MELO3C019387	Watermelon (97103) v1	mewmB461
MELO3C019387	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019387	Cucumber (Gy14) v2	cgybmeB210