MELO3C019344 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019344
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionEukaryotic translation initiation factor 3 subunit 6 interacting protein
Locationchr11 : 12136713 .. 12137126 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCCAAAGGGCGCCAAGTCTTTCCCTTCCATGATGGAGAAACTCTATTTGAAGCACATCCCCTCCCTCGCCATGCTACCTCAAAGAAAAATTCCAAGTAGGGTCTACAATCAGACGACGCTCAATAGAGTCATCACATTCCATCAAAATAAGGAAGAGGAGTATCACCTGAAAACACTAGGCCATGAGAAGGAGCCTAAGGGGATGGAAGACAAAGAAGACTTGCCTTTACCACTGCCAATGAAAAGGACAATCGCATCAACTTCCATGCAACTTGGGAAGAAATTAAAAGTTGATGCCACTAAACAAGTGGCCAAGGAAAATAATTCCACTCACTGCAAGAAAGTGGTCCAAAGAATTCCACTCAATGATGACCGCATCTCCCGCCTCGCTACTTTAAAGACCTAA

mRNA sequence

ATGGAGATTCCAAAGGGCGCCAAGTCTTTCCCTTCCATGATGGAGAAACTCTATTTGAAGCACATCCCCTCCCTCGCCATGCTACCTCAAAGAAAAATTCCAAGTAGGGTCTACAATCAGACGACGCTCAATAGAGTCATCACATTCCATCAAAATAAGGAAGAGGAGTATCACCTGAAAACACTAGGCCATGAGAAGGAGCCTAAGGGGATGGAAGACAAAGAAGACTTGCCTTTACCACTGCCAATGAAAAGGACAATCGCATCAACTTCCATGCAACTTGGGAAGAAATTAAAAGTTGATGCCACTAAACAAGTGGCCAAGGAAAATAATTCCACTCACTGCAAGAAAGTGGTCCAAAGAATTCCACTCAATGATGACCGCATCTCCCGCCTCGCTACTTTAAAGACCTAA

Coding sequence (CDS)

ATGGAGATTCCAAAGGGCGCCAAGTCTTTCCCTTCCATGATGGAGAAACTCTATTTGAAGCACATCCCCTCCCTCGCCATGCTACCTCAAAGAAAAATTCCAAGTAGGGTCTACAATCAGACGACGCTCAATAGAGTCATCACATTCCATCAAAATAAGGAAGAGGAGTATCACCTGAAAACACTAGGCCATGAGAAGGAGCCTAAGGGGATGGAAGACAAAGAAGACTTGCCTTTACCACTGCCAATGAAAAGGACAATCGCATCAACTTCCATGCAACTTGGGAAGAAATTAAAAGTTGATGCCACTAAACAAGTGGCCAAGGAAAATAATTCCACTCACTGCAAGAAAGTGGTCCAAAGAATTCCACTCAATGATGACCGCATCTCCCGCCTCGCTACTTTAAAGACCTAA

Protein sequence

MEIPKGAKSFPSMMEKLYLKHIPSLAMLPQRKIPSRVYNQTTLNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDATKQVAKENNSTHCKKVVQRIPLNDDRISRLATLKT*
Homology
[Close]
BLAST of MELO3C019344 vs. TrEMBL
Match: A0A0A0L879_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418740 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1 

Query: 43  LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 102
           LNRVI  HQNKEE + LKT+   ++ +GME++E   L +PMKR +ASTS Q  KKLK D 
Sbjct: 8   LNRVINLHQNKEE-HQLKTMDQVRDHEGMENEEISTL-VPMKRKVASTSTQPAKKLKDDG 67

Query: 103 TKQVAKENNSTHCKKVVQRIPLND 127
           TK  +      HC+KV Q  P  D
Sbjct: 68  TKD-SYSGKFPHCRKVTQWPPHED 88

[Close]
BLAST of MELO3C019344 vs. NCBI nr
Match: gi|700202850|gb|KGN57983.1| (hypothetical protein Csa_3G418740 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-09
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1 

Query: 43  LNRVITFHQNKEEEYHLKTLGHEKEPKGMEDKEDLPLPLPMKRTIASTSMQLGKKLKVDA 102
           LNRVI  HQNKEE + LKT+   ++ +GME++E   L +PMKR +ASTS Q  KKLK D 
Sbjct: 8   LNRVINLHQNKEE-HQLKTMDQVRDHEGMENEEISTL-VPMKRKVASTSTQPAKKLKDDG 67

Query: 103 TKQVAKENNSTHCKKVVQRIPLND 127
           TK  +      HC+KV Q  P  D
Sbjct: 68  TKD-SYSGKFPHCRKVTQWPPHED 88

The following BLAST results are available for this feature:
BLAST of MELO3C019344 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L879_CUCSA4.1e-0950.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418740 PE=4 SV=1[more]
BLAST of MELO3C019344 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202850|gb|KGN57983.1|5.9e-0950.00hypothetical protein Csa_3G418740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019344T1MELO3C019344T1mRNA