MELO3C019313 (gene) Melon (DHL92) v3.5.1

NameMELO3C019313
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription elongation factor B polypeptide 3
Locationchr11 : 11266920 .. 11267484 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTCACCACTGAAAAATGCAATAATCACAAAAAGTAATTGTTACAAAGGTATTCCAACAAAACATTCGTACAGGAAAATTTACCGATCAGTAACGACTTCTGAAGAAGGTCAGCAAAGTCTGTTAACAAGTCCGGTTCGGAGTACGCATGTAGGCGATCCTCGAACCCAATCTCCCTTGGGCCTATAGAAAAAGAGGTCCCTGAAAGTTCTCCACCGCGTACATTTCACTCGTCTGCATCCTCTTCTATTCCGAGAACTCGAGTTCAGTTGAAACGGTGGTATTAAAATCAGATTCTTTCGATAGTGAAGACAATGTCGTTCTGTCGATACTTCTTCAGCATAAGGCTGGACATCCAACTGATTCATCACCTACTCCTCCAAAACTTACTCAGGTTCCCTATTGTCCATCACACGTTACTTTACCTCCTCAGGAGGTTCCGACCCGAACTACGAATCATGGTACATTTTCCGCTGCTTCTGATTCTCTACATGCAACTCTTCCAACTGATGAAGAAGAAGCCAGTGATAATGCTGATGAAGATTATGTTCCTGTGTAG

mRNA sequence

ATGGCTCCCTCACCACTGAAAAATGCAATAATCACAAAAAGTAATTGTTACAAAGGTATTCCAACAAAACATTCGTACAGGAAAATTTACCGATCAGTAACGACTTCTGAAGAAGGTCAGCAAAGTCTGTTAACAAGTCCGGTTCGGAGTACGCATCATAAGGCTGGACATCCAACTGATTCATCACCTACTCCTCCAAAACTTACTCAGGTTCCCTATTGTCCATCACACGTTACTTTACCTCCTCAGGAGGTTCCGACCCGAACTACGAATCATGGTACATTTTCCGCTGCTTCTGATTCTCTACATGCAACTCTTCCAACTGATGAAGAAGAAGCCAGTGATAATGCTGATGAAGATTATGTTCCTGTGTAG

Coding sequence (CDS)

ATGGCTCCCTCACCACTGAAAAATGCAATAATCACAAAAAGTAATTGTTACAAAGGTATTCCAACAAAACATTCGTACAGGAAAATTTACCGATCAGTAACGACTTCTGAAGAAGGTCAGCAAAGTCTGTTAACAAGTCCGGTTCGGAGTACGCATCATAAGGCTGGACATCCAACTGATTCATCACCTACTCCTCCAAAACTTACTCAGGTTCCCTATTGTCCATCACACGTTACTTTACCTCCTCAGGAGGTTCCGACCCGAACTACGAATCATGGTACATTTTCCGCTGCTTCTGATTCTCTACATGCAACTCTTCCAACTGATGAAGAAGAAGCCAGTGATAATGCTGATGAAGATTATGTTCCTGTGTAG

Protein sequence

MAPSPLKNAIITKSNCYKGIPTKHSYRKIYRSVTTSEEGQQSLLTSPVRSTHHKAGHPTDSSPTPPKLTQVPYCPSHVTLPPQEVPTRTTNHGTFSAASDSLHATLPTDEEEASDNADEDYVPV*
BLAST of MELO3C019313 vs. NCBI nr
Match: gi|659072220|ref|XP_008464058.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18
Identity = 59/139 (42.45%), Postives = 75/139 (53.96%), Query Frame = 1

Query: 1   MAPSPLKNAIITKSNCYKGIPTKHSYRKIYRSVTTSEEGQQSLLTSPVRSTH-------- 60
           +APSP K+A  +K   YKGIPTKH Y+K+ RSVT + EG  S LTSPVRS+H        
Sbjct: 70  IAPSPPKSATTSKGKRYKGIPTKHPYKKVRRSVTATAEGLHSPLTSPVRSSHAGRPSDPV 129

Query: 61  ---------HKAGHPTDSSPTPPKLTQVPYCPSHVTLPPQEVPTRTTNHGTFSAASDSLH 120
                     + GH  + S TP +       P   T   +E P +TT+    S AS S  
Sbjct: 130 SPVTVKKEVPEVGHHNNVSSTPLQPRPTSSSPPRDTSLSKEGPPQTTDQSKSSTASSSPS 189

Query: 121 ATLPTDEEEASDNADEDYV 123
            +LPTD ++ASD  DEDYV
Sbjct: 190 GSLPTDVDDASDETDEDYV 208

BLAST of MELO3C019313 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 1

Query: 12  TKSNCYKGIPTKHSYRKIYRSVTTSEEGQQSLLTSPVRSTHHKAGHPTDSSPTPPKLTQV 71
           TK  CYKGI T+H ++KI RSV  ++  Q SLL +PVR +        DSS         
Sbjct: 4   TKGKCYKGIRTRHPFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFDSSDG------- 63

Query: 72  PYCPSHVTLPPQEVPTRTTNHGTFSAASD---SLHATLPTDEEEASDNADEDYVPV 125
                       +VP+RTT+HG  SA      S   +LPTD++EASD+ DEDYVPV
Sbjct: 64  ---------IDNDVPSRTTDHGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPV 103

BLAST of MELO3C019313 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-11
Identity = 56/152 (36.84%), Postives = 70/152 (46.05%), Query Frame = 1

Query: 1   MAPSPLKNAIITKSNCYKGIPTKHSYRKIYRSVTTSEEGQQSLLTSPVRSTHHKAGHPTD 60
           MA SP K    +K   YKGIPTKH Y+KI+RSV  +EEGQ   +  PV  +H        
Sbjct: 162 MALSPPKTVTSSKGKRYKGIPTKHPYKKIHRSVPPTEEGQHCQVPIPVHCSHAGCSSNPG 221

Query: 61  SSPT---------PPKLTQVPYCPSHVTLPPQEVPT----------------RTTNHGTF 120
           S  T         PP+ + +    S V  P   + T                 T  H   
Sbjct: 222 SLITVKKEVPEFSPPRTSHLS-TSSSVPEPRVSIETVVLDSDSSDSKDNVVLSTLLHRKS 281

Query: 121 SAASDSLH----ATLPTDEEEASDNADEDYVP 124
           SAA  S H    A+LPT+E++ASD  DEDYVP
Sbjct: 282 SAAPSSPHAFPQASLPTNEDDASDETDEDYVP 312

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659072220|ref|XP_008464058.1|3.7e-1842.45PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|659128057|ref|XP_008464024.1|2.3e-1242.24PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
gi|659082052|ref|XP_008441642.1|9.7e-1136.84PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019313T1MELO3C019313T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None