MELO3C019285.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019285.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein MNN4-like
Location	chr11 : 10888228 .. 10888749 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAGAATGTTGATGAGGAAGACGTGGCTGATGTGTTAGAGTTGGCTAAAACGAGGAAGAAGGCGAGAGAGAAAAAAGAAGAAAAAGAAAGAAGAGAAAAAGAAAGAAGAGAAAAAGAAAGAAAAGCAAAGGAGAAGGAAAAGGAGCGTCGCAAGAAACGCAATGAGGAAGAGAGGCGAAGGAAAGAGGAGTTAAAGAAACAAGGCAAGAAAGAGAAAGTACAATCCTCTCCTTCTATCGCCCCAACTGAATTTGAGAGGGTCGCGAGAAAGGCCCAAAAAAAATTGGAGAAGGTAGTATCGGGCCTTCTCAAGATGAAAGTCATAGTGCAAGGCGCCAAGGCCCTCACACAAGAAAAGAAAGAAGTAAAGTTGAGGGAGCAGGAAGAGCTCCTCAACAAAATTGATAAAGTACCCCTCTTTGCAAAGAAGAGAAAGGTTAAAAATACTCTCAGCGAGGAGTTGGTTGAAGAATTTAAAAGGGAGTTGGATAATCTAAGCCCTCTGGAGGAAAAAAGCTGA

mRNA sequence

GACAAGAATGTTGATGAGGAAGACGTGGCTGATGTGTTAGAGTTGGCTAAAACGAGGAAGAAGGCGAGAGAGAAAAAAGAAGAAAAAGAAAGAAGAGAAAAAGAAAGAAGAGAAAAAGAAAGAAAAGCAAAGGAGAAGGAAAAGGAGCGTCGCAAGAAACGCAATGAGGAAGAGAGGCGAAGGAAAGAGGAGTTAAAGAAACAAGGCAAGAAAGAGAAAGTACAATCCTCTCCTTCTATCGCCCCAACTGAATTTGAGAGGGTCGCGAGAAAGGCCCAAAAAAAATTGGAGAAGGTAGTATCGGGCCTTCTCAAGATGAAAGTCATAGTGCAAGGCGCCAAGGCCCTCACACAAGAAAAGAAAGAAGTAAAGTTGAGGGAGCAGGAAGAGCTCCTCAACAAAATTGATAAAGTACCCCTCTTTGCAAAGAAGAGAAAGGTTAAAAATACTCTCAGCGAGGAGTTGGTTGAAGAATTTAAAAGGGAGTTGGATAATCTAAGCCCTCTGGAGGAAAAAAGCTGA

Coding sequence (CDS)

GACAAGAATGTTGATGAGGAAGACGTGGCTGATGTGTTAGAGTTGGCTAAAACGAGGAAGAAGGCGAGAGAGAAAAAAGAAGAAAAAGAAAGAAGAGAAAAAGAAAGAAGAGAAAAAGAAAGAAAAGCAAAGGAGAAGGAAAAGGAGCGTCGCAAGAAACGCAATGAGGAAGAGAGGCGAAGGAAAGAGGAGTTAAAGAAACAAGGCAAGAAAGAGAAAGTACAATCCTCTCCTTCTATCGCCCCAACTGAATTTGAGAGGGTCGCGAGAAAGGCCCAAAAAAAATTGGAGAAGGTAGTATCGGGCCTTCTCAAGATGAAAGTCATAGTGCAAGGCGCCAAGGCCCTCACACAAGAAAAGAAAGAAGTAAAGTTGAGGGAGCAGGAAGAGCTCCTCAACAAAATTGATAAAGTACCCCTCTTTGCAAAGAAGAGAAAGGTTAAAAATACTCTCAGCGAGGAGTTGGTTGAAGAATTTAAAAGGGAGTTGGATAATCTAAGCCCTCTGGAGGAAAAAAGCTGA

Protein sequence

DKNVDEEDVADVLELAKTRKKAREKKEEKERREKERREKERKAKEKEKERRKKRNEEERRRKEELKKQGKKEKVQSSPSIAPTEFERVARKAQKKLEKVVSGLLKMKVIVQGAKALTQEKKEVKLREQEELLNKIDKVPLFAKKRKVKNTLSEELVEEFKRELDNLSPLEEKS

Homology

[Close]

BLAST of MELO3C019285.2 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 6.9e-11
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 79  SIAPTEFERVARKAQKKLEKVVSGLLKMKVIVQGAKALTQEKKEVKLREQEELLNKIDKV 138
           S A  + E+  +++  +  +  +GLLK+KV  QG KAL +EKKE+KLRE+EELLNK+DKV
Sbjct: 20  SRAQDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKV 79

Query: 139 PLFAKKRKVKNTLSEELVEEFKRELDNLSPLEE 172
            L  +KRK + T  EE  EEFK+E++ LSPLE+
Sbjct: 80  ALSVEKRKEEKTF-EEHCEEFKKEIEELSPLED 111

[Close]

BLAST of MELO3C019285.2 vs. NCBI nr
Match: KGN44432.1 (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 109 IVQGAKALTQEKKEVKLREQEELLNKIDKVPLFAKKRKVKNTLSEELVEEFKRELDNLSP 168
           + Q  KAL Q+KK+VKLREQ+ELLNKID+ P+  KK KV+ T SEE+ EEF+R+L++LSP
Sbjct: 1   MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 169 LEEK 173
           LE++
Sbjct: 61  LEDE 64

[Close]

BLAST of MELO3C019285.2 vs. NCBI nr
Match: KGN57985.1 (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 9.3e-08
Identity = 34/55 (61.82%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 118 QEKKEVKLREQEELLNKIDKVPLFAKKRKVKNTLSEELVEEFKRELDNLSPLEEK 173
           QEKKE++L+EQEELLNK+DKV LF KK K K T SEE+ EE +++L++LSP+E++
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDE 109

[Close]

BLAST of MELO3C019285.2 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 79  SIAPTEFERVARKAQKKLEKVVSGLLKMKVIVQGAKALTQEKKEVKLREQEELLNKIDKV 138
           S A  + E+  +++  +  +  +GLLK+KV  QG KAL +EKKE+KLRE+EELLNK+DKV
Sbjct: 20  SRAQDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKV 79

Query: 139 PLFAKKRKVKNTLSEELVEEFKRELDNLSPLEE 172
            L  +KRK + T  EE  EEFK+E++ LSPLE+
Sbjct: 80  ALSVEKRKEEKTF-EEHCEEFKKEIEELSPLED 111

[Close]

BLAST of MELO3C019285.2 vs. TrEMBL
Match: tr|A0A0A0K7W9|A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 39/64 (60.94%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 109 IVQGAKALTQEKKEVKLREQEELLNKIDKVPLFAKKRKVKNTLSEELVEEFKRELDNLSP 168
           + Q  KAL Q+KK+VKLREQ+ELLNKID+ P+  KK KV+ T SEE+ EEF+R+L++LSP
Sbjct: 1   MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 169 LEEK 173
           LE++
Sbjct: 61  LEDE 64

[Close]

BLAST of MELO3C019285.2 vs. TrEMBL
Match: tr|A0A0A0L7S0|A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-08
Identity = 34/55 (61.82%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 118 QEKKEVKLREQEELLNKIDKVPLFAKKRKVKNTLSEELVEEFKRELDNLSPLEEK 173
           QEKKE++L+EQEELLNK+DKV LF KK K K T SEE+ EE +++L++LSP+E++
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDE 109

The following BLAST results are available for this feature:

BLAST of MELO3C019285.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465464.1	6.9e-11	51.61	PREDICTED: protein MNN4-like [Cucumis melo]	[more]
KGN44432.1	2.2e-09	60.94	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
KGN57985.1	9.3e-08	61.82	hypothetical protein Csa_3G418760 [Cucumis sativus]	[more]

BLAST of MELO3C019285.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C019285.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019285.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	4.6e-11	51.61	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]
tr\|A0A0A0K7W9\|A0A0A0K7W9_CUCSA	1.5e-09	60.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1	[more]
tr\|A0A0A0L7S0\|A0A0A0L7S0_CUCSA	6.2e-08	61.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019285.2.1	MELO3C019285.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019285.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C019285.2	Cucumber (Gy14) v1	cgymedB071
MELO3C019285.2	Cucurbita maxima (Rimu)	cmamedB579
MELO3C019285.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C019285.2	Cucurbita maxima (Rimu)	cmamedB880
MELO3C019285.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C019285.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C019285.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C019285.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C019285.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C019285.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C019285.2	Melon (DHL92) v3.6.1	medmedB058
MELO3C019285.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C019285.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C019285.2	Watermelon (97103) v1	medwmB119
MELO3C019285.2	Silver-seed gourd	carmedB0030
MELO3C019285.2	Silver-seed gourd	carmedB0348
MELO3C019285.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C019285.2	Cucumber (Chinese Long) v3	cucmedB449
MELO3C019285.2	Watermelon (97103) v2	medwmbB087
MELO3C019285.2	Wax gourd	medwgoB128
MELO3C019285.2	Wax gourd	medwgoB143