MELO3C019276.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019276.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glial fibrillary acidic protein-like
Location	chr11 : 10671954 .. 10672371 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGCTATGGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGTGGAAAACAAAAATAGATTTTTGCAAAAAGCCGTTAACAGTTCTGAAAACCAGTTGCTGATATGTCGCAAAGCAAAGGAAGTCTTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGAC

mRNA sequence

ACCGCTATGGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGTGGAAAACAAAAATAGATTTTTGCAAAAAGCCGTTAACAGTTCTGAAAACCAGTTGCTGATATGTCGCAAAGCAAAGGAAGTCTTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGAC

Coding sequence (CDS)

ATGGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGTGGAAAACAAAAATAGATTTTTGCAAAAAGCCGTTAACAGTTCTGAAAACCAGTTGCTGATATGTCGCAAAGCAAAGGAAGTCTTAACAGATGACTATGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAAGGACGAGTACGAGACATTGAGACGTAAGTATGATGATGCTATAGGTCGAATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGTATGGCAGATCAATTCTCAATGCAAGCTAGGACTCTCCGGCAAGGTGTTATACCTACACGCGACACCAATAGAGAATTGTCTCATTTTCTAGGAATCATAGGACAGTACCTCGGA

Protein sequence

MEIEVLQHSIKEYKSQLIEVENKNRFLQKAVNSSENQLLICRKAKEVLTDDYAQLIEKYQEMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQGVIPTRDTNRELSHFLGIIGQYLG

Homology

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BLAST of MELO3C019276.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.8e-46
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEIEVLQHSIKEYKSQLIEVENKNRFLQKAVNSSENQLLICRKAKEVLTDDYAQLIEKYQ 60
           M IEVLQHSI+EYKSQLIE E+KN FLQKAVNSSE+QLLICRKA+EV+TDDYAQL+EKYQ
Sbjct: 120 MGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQ 179

Query: 61  EMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQ 114
           EMSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQ
Sbjct: 180 EMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQ 232

[Close]

BLAST of MELO3C019276.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEIEVLQHSIKEYKSQLIEVENKNRFLQKAVNSSENQLLICRKAKEVLTDDYAQLIEKYQ 60
           M IEVLQHSI+EYKSQLIE E+KN FLQKAVNSSE+QLLICRKA+EV+TDDYAQL+EKYQ
Sbjct: 120 MGIEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQ 179

Query: 61  EMSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMASMADQFSMQARTLRQ 114
           EMSIDFMMWKDEYETLRRKYDDAI RMERGAEKLRQMAS+ADQFS+QARTLRQ
Sbjct: 180 EMSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQ 232

The following BLAST results are available for this feature:

BLAST of MELO3C019276.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	1.8e-46	89.38	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]

BLAST of MELO3C019276.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C019276.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019276.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	1.2e-46	89.38	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019276.2.1	MELO3C019276.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..37

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019276.2	Wax gourd	medwgoB128
MELO3C019276.2	Wax gourd	medwgoB143
MELO3C019276.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C019276.2	Cucumber (Gy14) v1	cgymedB071
MELO3C019276.2	Cucurbita maxima (Rimu)	cmamedB579
MELO3C019276.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C019276.2	Cucurbita maxima (Rimu)	cmamedB880
MELO3C019276.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C019276.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C019276.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C019276.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C019276.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C019276.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C019276.2	Melon (DHL92) v3.6.1	medmedB058
MELO3C019276.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C019276.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C019276.2	Watermelon (97103) v1	medwmB119
MELO3C019276.2	Silver-seed gourd	carmedB0030
MELO3C019276.2	Silver-seed gourd	carmedB0348
MELO3C019276.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C019276.2	Cucumber (Chinese Long) v3	cucmedB449
MELO3C019276.2	Watermelon (97103) v2	medwmbB087