MELO3C019275 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019275
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon gag protein, putative
Locationchr11 : 10529407 .. 10529865 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCATACCCTCCGGGTTTCACTCCTCAAAGGTCGTATAGTCCACGTATGGTGGATAGGACATATCCTACATCATTTTTCATGCCAAATTCTAACACAACCACCCAACAGGCAGCCCATGTGAGTAATCCTATATCCACTCCAACTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGAGTAGTAGAAAAAGACTAGAATTTCTAGAAGAAAGATTGTGTGCCATTGAAGGTGCAGACATGTACGGGAGTATCGACGCAACACAACTATGTTTAATATCAGATGTAGTGATCCCTCCCAAATTTAAGATTCTAGATTTTGAGAAGTACAATGGAACCACGTGCCCAAAAAGTCATCTAGTTATGTACTGTCGGAAAATGTCAGCTTACGCTCGTGATGATAAATTGTTGATTTATTGCTTCCAAGAAAGCTTAGTTGGCTCAGCTTCTCGCTGA

mRNA sequence

ATGCCTGCATACCCTCCGGGTTTCACTCCTCAAAGGTCGTATAGTCCACGTATGGTGGATAGGACATATCCTACATCATTTTTCATGCCAAATTCTAACACAACCACCCAACAGGCAGCCCATGTGAGTAATCCTATATCCACTCCAACTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGAGTAGTAGAAAAAGACTAGAATTTCTAGAAGAAAGATTGTGTGCCATTGAAGGTGCAGACATGTACGGGAGTATCGACGCAACACAACTATGTTTAATATCAGATGTAGTGATCCCTCCCAAATTTAAGATTCTAGATTTTGAGAAGTACAATGGAACCACGTGCCCAAAAAGTCATCTAGTTATGTACTGTCGGAAAATGTCAGCTTACGCTCGTGATGATAAATTGTTGATTTATTGCTTCCAAGAAAGCTTAGTTGGCTCAGCTTCTCGCTGA

Coding sequence (CDS)

ATGCCTGCATACCCTCCGGGTTTCACTCCTCAAAGGTCGTATAGTCCACGTATGGTGGATAGGACATATCCTACATCATTTTTCATGCCAAATTCTAACACAACCACCCAACAGGCAGCCCATGTGAGTAATCCTATATCCACTCCAACTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGAGTAGTAGAAAAAGACTAGAATTTCTAGAAGAAAGATTGTGTGCCATTGAAGGTGCAGACATGTACGGGAGTATCGACGCAACACAACTATGTTTAATATCAGATGTAGTGATCCCTCCCAAATTTAAGATTCTAGATTTTGAGAAGTACAATGGAACCACGTGCCCAAAAAGTCATCTAGTTATGTACTGTCGGAAAATGTCAGCTTACGCTCGTGATGATAAATTGTTGATTTATTGCTTCCAAGAAAGCTTAGTTGGCTCAGCTTCTCGCTGA

Protein sequence

MPAYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR*
Homology
[Close]
BLAST of MELO3C019275 vs. TrEMBL
Match: A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-31
Identity = 79/169 (46.75%), Postives = 102/169 (60.36%), Query Frame = 1 

Query: 2   PAYPPGFTPQ--RSYSPRMVDRTYPTSFFMPNSNTTT--QQ----AAHVSNPISTPTTES 61
           P YPPGFTP   R+ S  M        F MP     T  QQ     A  S+PIS P  + 
Sbjct: 476 PVYPPGFTPPPARNVSIPMPSVGQYPFFRMPIGPPPTYAQQRPIGGASPSDPISVPDLDD 535

Query: 62  GKK----------ISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + K+ +  EERL  +EG  MY S+DA +LCL+ DVVIPPKF
Sbjct: 536 PKEQEKLKCGSVESKDNPDTHKKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKF 595

Query: 122 KILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           K+ DFEKY+GT CP +H+ MYCR+M+AYA DDKLLI+CFQ+SL G+A++
Sbjct: 596 KVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAK 644

[Close]
BLAST of MELO3C019275 vs. TrEMBL
Match: A0A061DM48_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.4e-31
Identity = 79/169 (46.75%), Postives = 102/169 (60.36%), Query Frame = 1 

Query: 2   PAYPPGFTPQ--RSYSPRMVDRTYPTSFFMPNSNTTT--QQ----AAHVSNPISTPTTES 61
           P YPPGFTP   R+ S  M        F MP     T  QQ     A  S+PIS P  + 
Sbjct: 57  PVYPPGFTPPPARNASIPMPSMGQYPFFGMPIGPPPTYAQQRPIGGASPSDPISVPDLDD 116

Query: 62  GKK----------ISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + ++ +  EERL  +EG  MY S+DA +LCL+SDVVIPPKF
Sbjct: 117 PKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVSDVVIPPKF 176

Query: 122 KILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           K+ DFEKY+GT CP +H+ MYCR+M AYA DDKLLI+CFQ+SL G+A++
Sbjct: 177 KVPDFEKYDGTKCPVTHITMYCRRMVAYAHDDKLLIHCFQDSLTGAAAK 225

[Close]
BLAST of MELO3C019275 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 78/169 (46.15%), Postives = 102/169 (60.36%), Query Frame = 1 

Query: 2   PAYPPGFTPQ--RSYSPRMVDRTYPTSFFMPNSNTTT--QQ----AAHVSNPISTPTTES 61
           P YPPGFTP   R+ S  M        F MP     T  QQ     A  S+PIS P  + 
Sbjct: 49  PVYPPGFTPPPARNASIPMPSMGQYPFFGMPIGPPPTYAQQRPIGGASPSDPISVPDLDD 108

Query: 62  GKK----------ISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + ++ +  EERL  +EG  MY S+DA +LCL+ DVVIPPKF
Sbjct: 109 PKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKF 168

Query: 122 KILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           K+ DFEKY+GT CP +H+ MYCR+M+AYA DDKLLI+CFQ+SL G+A++
Sbjct: 169 KVSDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAK 217

[Close]
BLAST of MELO3C019275 vs. TrEMBL
Match: A0A061FW77_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-30
Identity = 78/169 (46.15%), Postives = 103/169 (60.95%), Query Frame = 1 

Query: 2   PAYPPGFTPQ--RSYSPRMVDRTYPTSFFMPNS--NTTTQQ----AAHVSNPISTPTTES 61
           P YPPGFTP   R+ S  M        F MP    +T  QQ     A  S+PIS P  + 
Sbjct: 38  PVYPPGFTPPPARNASIPMPSVGQYPFFGMPIGPPSTYAQQRPIGGASPSDPISVPDLDD 97

Query: 62  GKK----------ISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKF 121
            K+            +   + ++ +  EERL  +EG  MY S+DA +LCL+ DVVIPPKF
Sbjct: 98  PKEQEKLKCGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAIELCLVPDVVIPPKF 157

Query: 122 KILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           K+ DFEKY+GT CP +H+ MYCR+M+AYA DDKLLI+CFQ+SL G+A++
Sbjct: 158 KVPDFEKYDGTKCPVTHITMYCRRMAAYAHDDKLLIHCFQDSLTGAAAK 206

[Close]
BLAST of MELO3C019275 vs. TrEMBL
Match: A0A061FIS1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035381 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-30
Identity = 78/172 (45.35%), Postives = 104/172 (60.47%), Query Frame = 1 

Query: 2   PAYPPGFTP---QRSYSPRMVDRTYPTSFFMPNSN----TTTQQ----AAHVSNPISTPT 61
           P YPPGFTP   + +  P    R YP  F MP       T  QQ     A  SNPIS P 
Sbjct: 299 PVYPPGFTPPPARNASIPMPSIRQYPF-FGMPVPTGPPPTYAQQRPIGGASPSNPISVPD 358

Query: 62  TESGKK----------ISEEQSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIP 121
            +  K+          + +   + ++ +  +ERL  IEG  MY S+DA +L L+ DVVIP
Sbjct: 359 LDDLKEQEKLKCGSVELKDNLDTHQKFDLFKERLHMIEGMGMYCSMDAIELYLVPDVVIP 418

Query: 122 PKFKILDFEKYNGTTCPKSHLVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           PKFK+LDF+KY+GT CP +H+ MYCR+M+ YA DDKLLI+CFQ+SL G+A++
Sbjct: 419 PKFKVLDFKKYDGTKCPVTHITMYCRRMATYAHDDKLLIHCFQDSLTGAAAK 469

[Close]
BLAST of MELO3C019275 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 8.4e-65
Identity = 128/150 (85.33%), Postives = 132/150 (88.00%), Query Frame = 1 

Query: 3   AYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEEQS 62
           AYPP FTPQR  SPRMVDRTYPTSF  PN NTTTQQAAHVS+ ISTP T+SGKKISEEQ 
Sbjct: 58  AYPPSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQG 117

Query: 63  SRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSHLV 122
           SRKRLEFLEERLC IEG DMY SIDATQLCLISDVVIP KFKI DFEKYNGTTCPKSHLV
Sbjct: 118 SRKRLEFLEERLCTIEGIDMYESIDATQLCLISDVVIPLKFKIPDFEKYNGTTCPKSHLV 177

Query: 123 MYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           MYCRKMS YA DDKLLI+ FQ+SLVG ASR
Sbjct: 178 MYCRKMSTYAHDDKLLIHRFQDSLVGPASR 207

[Close]
BLAST of MELO3C019275 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-63
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 1 

Query: 1   MPAYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEE 60
           M  YPPGFTPQ+S SPR+VDRTYPT     N NTTTQQA HVS+PIST  TE GKKISEE
Sbjct: 56  MTTYPPGFTPQQSSSPRIVDRTYPTQ----NPNTTTQQAVHVSDPISTLITEGGKKISEE 115

Query: 61  QSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSH 120
           Q SR+R+EFLEERL AIEGADMYGSIDATQLCLISDVVIPPKFK  DFEKYNGTTCPKSH
Sbjct: 116 QGSRRRMEFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 175

Query: 121 LVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           LVMYCRKMSAYA DDKLLI CFQ+SLVG ASR
Sbjct: 176 LVMYCRKMSAYAHDDKLLICCFQDSLVGPASR 203

[Close]
BLAST of MELO3C019275 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-60
Identity = 123/152 (80.92%), Postives = 129/152 (84.87%), Query Frame = 1 

Query: 1   MPAYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEE 60
           MPAYP GFTPQRS SPRM   TYPT     N N  TQQ  HVS+P+STP T+SGKKISEE
Sbjct: 56  MPAYPIGFTPQRSSSPRM---TYPTQ----NPNPITQQTDHVSDPMSTPITKSGKKISEE 115

Query: 61  QSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSH 120
           QSSRKRLEFLEERL  IEGADMYGSIDATQLCLISDVVIPPKFK  DFEKYNGTTCPKSH
Sbjct: 116 QSSRKRLEFLEERLRVIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 175

Query: 121 LVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           LVMYC+KMSAYA DDKLLI+CFQ+SLVG  SR
Sbjct: 176 LVMYCQKMSAYAHDDKLLIHCFQDSLVGPTSR 200

[Close]
BLAST of MELO3C019275 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 2.6e-58
Identity = 121/152 (79.61%), Postives = 127/152 (83.55%), Query Frame = 1 

Query: 1   MPAYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEE 60
           MPAYPPGFTPQRS SPRM   TY T     N N  TQQ  HVS+P+STP TESGKKI EE
Sbjct: 56  MPAYPPGFTPQRSSSPRM---TYSTQ----NPNPITQQENHVSDPMSTPITESGKKILEE 115

Query: 61  QSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSH 120
           Q SRKRLEF+EERL AIEGADMYGSIDATQLCLIS VVIPPKFK  +FEKYNGTTCPKSH
Sbjct: 116 QGSRKRLEFVEERLRAIEGADMYGSIDATQLCLISYVVIPPKFKTPNFEKYNGTTCPKSH 175

Query: 121 LVMYCRKMSAYARDDKLLIYCFQESLVGSASR 153
           LVMYCRKMSAYA DDKLLI+CFQ+SLVG  SR
Sbjct: 176 LVMYCRKMSAYAYDDKLLIHCFQDSLVGPTSR 200

[Close]
BLAST of MELO3C019275 vs. NCBI nr
Match: gi|659113185|ref|XP_008456442.1| (PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 119/151 (78.81%), Postives = 126/151 (83.44%), Query Frame = 1 

Query: 1   MPAYPPGFTPQRSYSPRMVDRTYPTSFFMPNSNTTTQQAAHVSNPISTPTTESGKKISEE 60
           MPAYP GFTPQRS SPRM   TYPT     N N  +QQ  HVS+P+STP TES KKI EE
Sbjct: 1   MPAYPLGFTPQRSSSPRM---TYPTQ----NPNPISQQENHVSDPMSTPITESCKKILEE 60

Query: 61  QSSRKRLEFLEERLCAIEGADMYGSIDATQLCLISDVVIPPKFKILDFEKYNGTTCPKSH 120
           Q SRKRL+FLEERL AIEGADMYGSIDATQLCLISDVVIPPKFK  DFEKYNGTTCPKSH
Sbjct: 61  QGSRKRLKFLEERLRAIEGADMYGSIDATQLCLISDVVIPPKFKTPDFEKYNGTTCPKSH 120

Query: 121 LVMYCRKMSAYARDDKLLIYCFQESLVGSAS 152
           L+MYCRKMSAYA DDKLLI+CFQ+SLVG  S
Sbjct: 121 LIMYCRKMSAYAHDDKLLIHCFQDSLVGPTS 144

The following BLAST results are available for this feature:
BLAST of MELO3C019275 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061E8N3_THECC7.2e-3146.75Uncharacterized protein OS=Theobroma cacao GN=TCM_010930 PE=4 SV=1[more]
A0A061DM48_THECC9.4e-3146.75Gag-pro-like protein OS=Theobroma cacao GN=TCM_002389 PE=4 SV=1[more]
A0A061E6J4_THECC1.2e-3046.15Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A061FW77_THECC1.2e-3046.15Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1[more]
A0A061FIS1_THECC6.1e-3045.35Uncharacterized protein OS=Theobroma cacao GN=TCM_035381 PE=4 SV=1[more]
BLAST of MELO3C019275 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102853|ref|XP_008452348.1|8.4e-6585.33PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
gi|659114599|ref|XP_008457136.1|1.6e-6382.89PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me... [more]
gi|659130442|ref|XP_008465174.1|3.6e-6080.92PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
gi|659093710|ref|XP_008447676.1|2.6e-5879.61PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo][more]
gi|659113185|ref|XP_008456442.1|1.3e-5778.81PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019275T1MELO3C019275T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019275Cucurbita pepo (Zucchini)cpemeB257
MELO3C019275Cucurbita pepo (Zucchini)cpemeB599
MELO3C019275Cucurbita pepo (Zucchini)cpemeB667
MELO3C019275Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C019275Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C019275Cucumber (Gy14) v2cgybmeB083
MELO3C019275Cucumber (Gy14) v2cgybmeB395
MELO3C019275Cucumber (Gy14) v2cgybmeB452
MELO3C019275Silver-seed gourdcarmeB0030
MELO3C019275Silver-seed gourdcarmeB0341
MELO3C019275Silver-seed gourdcarmeB0863
MELO3C019275Cucumber (Chinese Long) v3cucmeB103
MELO3C019275Cucumber (Chinese Long) v3cucmeB457
MELO3C019275Cucumber (Chinese Long) v3cucmeB532
MELO3C019275Watermelon (97103) v2mewmbB083
MELO3C019275Watermelon (97103) v2mewmbB092
MELO3C019275Wax gourdmewgoB107
MELO3C019275Wax gourdmewgoB126
MELO3C019275Wax gourdmewgoB140
MELO3C019275Melon (DHL92) v3.5.1memeB039
MELO3C019275Melon (DHL92) v3.5.1memeB057
MELO3C019275Cucumber (Gy14) v1cgymeB014
MELO3C019275Cucumber (Gy14) v1cgymeB072
MELO3C019275Cucumber (Gy14) v1cgymeB246
MELO3C019275Cucurbita maxima (Rimu)cmameB087
MELO3C019275Cucurbita maxima (Rimu)cmameB451
MELO3C019275Cucurbita maxima (Rimu)cmameB502
MELO3C019275Cucurbita maxima (Rimu)cmameB533
MELO3C019275Cucurbita moschata (Rifu)cmomeB080
MELO3C019275Cucurbita moschata (Rifu)cmomeB443
MELO3C019275Cucurbita moschata (Rifu)cmomeB482
MELO3C019275Cucurbita moschata (Rifu)cmomeB523
MELO3C019275Cucurbita moschata (Rifu)cmomeB768
MELO3C019275Wild cucumber (PI 183967)cpimeB096
MELO3C019275Wild cucumber (PI 183967)cpimeB445
MELO3C019275Wild cucumber (PI 183967)cpimeB520
MELO3C019275Cucumber (Chinese Long) v2cumeB097
MELO3C019275Cucumber (Chinese Long) v2cumeB454
MELO3C019275Cucumber (Chinese Long) v2cumeB516
MELO3C019275Watermelon (Charleston Gray)mewcgB086
MELO3C019275Watermelon (Charleston Gray)mewcgB090
MELO3C019275Watermelon (Charleston Gray)mewcgB092
MELO3C019275Watermelon (97103) v1mewmB103
MELO3C019275Watermelon (97103) v1mewmB124
MELO3C019275Watermelon (97103) v1mewmB130