MELO3C019212.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019212.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Pre T-cell antigen receptor alpha
Location	chr11 : 9297084 .. 9297257 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGAGGAATGGAAGCACACAAGAACAGATACATCGAGGATCGGAGTACTGCTAGAGAGAATCTTGAGCATAACTTCCGCTGGATTCGATGGAATTTCGCTGTTGTGGGTTTCTTCAGCATCGCCGTTCCCCTTCTTGTTTACAAGGGGTTAAGAGAATTTGTAATATAA

mRNA sequence

ATGGGCAGAGGAATGGAAGCACACAAGAACAGATACATCGAGGATCGGAGTACTGCTAGAGAGAATCTTGAGCATAACTTCCGCTGGATTCGATGGAATTTCGCTGTTGTGGGTTTCTTCAGCATCGCCGTTCCCCTTCTTGTTTACAAGGGGTTAAGAGAATTTGTAATATAA

Coding sequence (CDS)

ATGGGCAGAGGAATGGAAGCACACAAGAACAGATACATCGAGGATCGGAGTACTGCTAGAGAGAATCTTGAGCATAACTTCCGCTGGATTCGATGGAATTTCGCTGTTGTGGGTTTCTTCAGCATCGCCGTTCCCCTTCTTGTTTACAAGGGGTTAAGAGAATTTGTAATATAA

Protein sequence

MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGLREFVI

Homology

[Close]

BLAST of MELO3C019212.2 vs. NCBI nr
Match: XP_022988537.1 (uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharacterized protein LOC111780310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKNR+IED S+ARENLEHNFRW R NFA+VG F IAVPLLVYKG+ REF
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. NCBI nr
Match: KZV34329.1 (Pre T-cell antigen receptor alpha [Dorcoceras hygrometricum])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKNR+IED STARENLEHNFRW R NFA+VG F IA+P+LVYKG+ REF
Sbjct: 1  MGGGMEAHKNRWIEDWSTARENLEHNFRWTRRNFALVGIFGIALPVLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. NCBI nr
Match: XP_022921830.1 (uncharacterized protein LOC111429971 [Cucurbita moschata])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKN++IED S+ARENLEHNFRW R NFA+VG F IAVPLLVYKG+ REF
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. NCBI nr
Match: OWM89248.1 (hypothetical protein CDL15_Pgr010535 [Punica granatum] >PKI59873.1 hypothetical protein CRG98_019755 [Punica granatum])

HSP 1 Score: 89.4 bits (220), Expect = 4.4e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKNR+IED STARENLEHNFRW R N A+VG F IA+P+LVYKG+ REF
Sbjct: 1  MGGGMEAHKNRFIEDWSTARENLEHNFRWTRRNLALVGIFGIAIPVLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. NCBI nr
Match: XP_007025728.1 (PREDICTED: uncharacterized protein LOC18596917 [Theobroma cacao] >EOY28350.1 Pre T-cell antigen receptor alpha [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEA+KNR+IED S+ARENLEHNFRW R NFA+VG F IA+P+LVYKG+ REF
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. TAIR10
Match: AT2G31490.1 (unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-16
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL 53
          MG GME +KN++IED  +ARENLEHNFRW R NFA++G F IA+P++VYKG+
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGI 52

[Close]

BLAST of MELO3C019212.2 vs. TrEMBL
Match: tr|A0A218XWT9|A0A218XWT9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010535 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKNR+IED STARENLEHNFRW R N A+VG F IA+P+LVYKG+ REF
Sbjct: 1  MGGGMEAHKNRFIEDWSTARENLEHNFRWTRRNLALVGIFGIAIPVLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. TrEMBL
Match: tr|A0A061GEQ2|A0A061GEQ2_THECC (Pre T-cell antigen receptor alpha OS=Theobroma cacao OX=3641 GN=TCM_029947 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEA+KNR+IED S+ARENLEHNFRW R NFA+VG F IA+P+LVYKG+ REF
Sbjct: 1  MGGGMEANKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAIPVLVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. TrEMBL
Match: tr|A0A2G9GC84|A0A2G9GC84_9LAMI (NADH:ubiquinone reductase (H(+)-translocating) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24572 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKG-LREF 56
          MG GMEAHKNR+IED STARENLEHNFRW R N A+VG F +AVP+L+YKG ++EF
Sbjct: 1  MGGGMEAHKNRWIEDWSTARENLEHNFRWTRRNLALVGIFGVAVPVLIYKGIIKEF 56

[Close]

BLAST of MELO3C019212.2 vs. TrEMBL
Match: tr|A0A2I4HAE4|A0A2I4HAE4_9ROSI (uncharacterized protein LOC108981675 OS=Juglans regia OX=51240 GN=LOC109015106 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEA+KNR+IED  +ARENLEHNFRW R NFA+VG F +AVP+LVYKG+ REF
Sbjct: 1  MGGGMEANKNRFIEDWGSARENLEHNFRWTRRNFALVGLFGLAVPILVYKGIVREF 56

[Close]

BLAST of MELO3C019212.2 vs. TrEMBL
Match: tr|A0A059CK03|A0A059CK03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1  MGRGMEAHKNRYIEDRSTARENLEHNFRWIRWNFAVVGFFSIAVPLLVYKGL-REF 56
          MG GMEAHKN++IED  +ARE LEHNFRW R NFA+VG F +A+PLLVYKG+ REF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

The following BLAST results are available for this feature:

BLAST of MELO3C019212.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988537.1	8.9e-16	80.36	uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharac...	[more]
KZV34329.1	2.0e-15	78.57	Pre T-cell antigen receptor alpha [Dorcoceras hygrometricum]	[more]
XP_022921830.1	2.0e-15	78.57	uncharacterized protein LOC111429971 [Cucurbita moschata]	[more]
OWM89248.1	4.4e-15	76.79	hypothetical protein CDL15_Pgr010535 [Punica granatum] >PKI59873.1 hypothetical ...	[more]
XP_007025728.1	1.7e-14	75.00	PREDICTED: uncharacterized protein LOC18596917 [Theobroma cacao] >EOY28350.1 Pre...	[more]

BLAST of MELO3C019212.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31490.1	8.3e-16	65.38	unknown protein	[more]

BLAST of MELO3C019212.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019212.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A218XWT9\|A0A218XWT9_PUNGR	2.9e-15	76.79	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr010535 PE=4 SV=1	[more]
tr\|A0A061GEQ2\|A0A061GEQ2_THECC	1.1e-14	75.00	Pre T-cell antigen receptor alpha OS=Theobroma cacao OX=3641 GN=TCM_029947 PE=4 ...	[more]
tr\|A0A2G9GC84\|A0A2G9GC84_9LAMI	1.1e-14	73.21	NADH:ubiquinone reductase (H(+)-translocating) OS=Handroanthus impetiginosus OX=...	[more]
tr\|A0A2I4HAE4\|A0A2I4HAE4_9ROSI	3.2e-14	73.21	uncharacterized protein LOC108981675 OS=Juglans regia OX=51240 GN=LOC109015106 P...	[more]
tr\|A0A059CK03\|A0A059CK03_EUCGR	3.2e-14	71.43	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045271	respiratory chain complex I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019212.2.1	MELO3C019212.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35479	FAMILY NOT NAMED	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019212.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C019212.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C019212.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C019212.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C019212.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C019212.2	Watermelon (97103) v2	medwmbB087
MELO3C019212.2	Wax gourd	medwgoB128
MELO3C019212.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C019212.2	Cucumber (Gy14) v1	cgymedB071
MELO3C019212.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C019212.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C019212.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C019212.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C019212.2	Cucurbita pepo (Zucchini)	cpemedB306