MELO3C019194.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019194.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaCnng69290D protein
Location	chr08 : 15688991 .. 15689254 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAGACATCGTCATCTTCGTCATCAATGTCATCGTCATACTAGGTATCATCATCCTCCGACGAAGAAGGGAGATTCAAGCAGGCAGCGACGTACGGTCAGGCCGGGCGAAGCAAGAACAAAGGGTGGGCATTTGCTAGTCCAATGAGAGCTTTCACGAAGCCATCATCTTCATCATCAGAAGGGAAAAGAGAAGCATCGGAGAAAAATTCGACTCAAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

mRNA sequence

ATGATTCAGACATCGTCATCTTCGTCATCAATGTCATCGTCATACTAGGTATCATCATCCTCCGACGAAGAAGGGAGATTCAAGCAGGCAGCGACGTACGGTCAGGCCGGGCGAAGCAAGAACAAAGGGTGGGCATTTGCTAGTCCAATGAGAGCTTTCACGAAGCCATCATCTTCATCATCAGAAGGGAAAAGAGAAGCATCGGAGAAAAATTCGACTCAAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

Coding sequence (CDS)

ATGAGAGCTTTCACGAAGCCATCATCTTCATCATCAGAAGGGAAAAGAGAAGCATCGGAGAAAAATTCGACTCAAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

Protein sequence

MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI

Homology

[Close]

BLAST of MELO3C019194.2 vs. NCBI nr
Match: XP_008438897.1 (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAFTKPSSSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 348 MRAFTKPSSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of MELO3C019194.2 vs. NCBI nr
Match: XP_004134219.2 (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis sativus] >KGN57124.1 hypothetical protein Csa_3G159440 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAFTKPSSSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 348 MRAFTKPSSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of MELO3C019194.2 vs. NCBI nr
Match: XP_022955503.1 (uncharacterized protein LOC111457510 [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAF KP SSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 325 MRAFGKPPSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 362

[Close]

BLAST of MELO3C019194.2 vs. NCBI nr
Match: XP_022979846.1 (uncharacterized protein LOC111479418 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAF KP SSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 322 MRAFGKPPSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 359

[Close]

BLAST of MELO3C019194.2 vs. NCBI nr
Match: XP_023528095.1 (uncharacterized protein LOC111791114 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAF KP SSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 327 MRAFGKPPSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 364

[Close]

BLAST of MELO3C019194.2 vs. TrEMBL
Match: tr|A0A1S3AY44|A0A1S3AY44_CUCME (uncharacterized protein DDB_G0271670 OS=Cucumis melo OX=3656 GN=LOC103483856 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAFTKPSSSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 348 MRAFTKPSSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of MELO3C019194.2 vs. TrEMBL
Match: tr|A0A0A0L7Y1|A0A0A0L7Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G159440 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-08
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   MRAFTKPSSSSSEGKREASEKNSTQNLDAIPSLLAVRI 39
           MRAFTKPSSSSSEGKRE+SEKNST NLDAIPSLLAVRI
Sbjct: 348 MRAFTKPSSSSSEGKRESSEKNSTPNLDAIPSLLAVRI 385

The following BLAST results are available for this feature:

BLAST of MELO3C019194.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438897.1	2.0e-08	94.74	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo]	[more]
XP_004134219.2	2.0e-08	94.74	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis sativus] >KGN57124.1 hy...	[more]
XP_022955503.1	5.0e-07	89.47	uncharacterized protein LOC111457510 [Cucurbita moschata]	[more]
XP_022979846.1	5.0e-07	89.47	uncharacterized protein LOC111479418 [Cucurbita maxima]	[more]
XP_023528095.1	5.0e-07	89.47	uncharacterized protein LOC111791114 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C019194.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C019194.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C019194.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY44\|A0A1S3AY44_CUCME	1.4e-08	94.74	uncharacterized protein DDB_G0271670 OS=Cucumis melo OX=3656 GN=LOC103483856 PE=...	[more]
tr\|A0A0A0L7Y1\|A0A0A0L7Y1_CUCSA	1.4e-08	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G159440 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019194.2.1	MELO3C019194.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019194.2	Cucurbita maxima (Rimu)	cmamedB911
MELO3C019194.2	Cucurbita moschata (Rifu)	cmomedB899
MELO3C019194.2	Cucurbita pepo (Zucchini)	cpemedB536
MELO3C019194.2	Watermelon (Charleston Gray)	medwcgB535
MELO3C019194.2	Watermelon (97103) v2	medwmbB541