MELO3C019185 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019185
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr8 : 13939405 .. 13939644 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTGAACTGCCAAAGTCACTGCCTCCTCGACGGGGGATTGATCACAAGATTGAGCTTGTCCCAGGAACCAAGCCTCCAACAAAGAATGCTTACCAAATGGTTCCACCTGAGTTAGCTGAATTCTGGAAACAATTAGACAAACTGTTGGCTCCGAATTTATCAGACCTGCGAAAGCGCCTATGGCACCCCTATGTCGTTTCAGAAGAAGAAAGACAGAACACTCCAACTGTGTAG

mRNA sequence

ATGCCACCTGAACTGCCAAAGTCACTGCCTCCTCGACGGGGGATTGATCACAAGATTGAGCTTGTCCCAGGAACCAAGCCTCCAACAAAGAATGCTTACCAAATGGTTCCACCTGAGTTAGCTGAATTCTGGAAACAATTAGACAAACTGTTGGCTCCGAATTTATCAGACCTGCGAAAGCGCCTATGGCACCCCTATGTCGTTTCAGAAGAAGAAAGACAGAACACTCCAACTGTGTAG

Coding sequence (CDS)

ATGCCACCTGAACTGCCAAAGTCACTGCCTCCTCGACGGGGGATTGATCACAAGATTGAGCTTGTCCCAGGAACCAAGCCTCCAACAAAGAATGCTTACCAAATGGTTCCACCTGAGTTAGCTGAATTCTGGAAACAATTAGACAAACTGTTGGCTCCGAATTTATCAGACCTGCGAAAGCGCCTATGGCACCCCTATGTCGTTTCAGAAGAAGAAAGACAGAACACTCCAACTGTGTAG

Protein sequence

MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLLAPNLSDLRKRLWHPYVVSEEERQNTPTV*

Homology

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BLAST of MELO3C019185 vs. TrEMBL
Match: Q9ZS84_SOLLC (Polyprotein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-11
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLLAPNLSDLRK 60
           MPPELPK LPPRR IDHKIEL+PGT  P +  Y+M P EL E  KQL++LL   L    K
Sbjct: 586 MPPELPKKLPPRRDIDHKIELLPGTVAPAQAPYRMAPKELVELRKQLNELLDAGLIQPSK 645

Query: 61  RLWHPYVVSEEERQNT 77
             +   V+ ++++  T
Sbjct: 646 APYGAPVLFQKKQDGT 661

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BLAST of MELO3C019185 vs. TrEMBL
Match: A0A0V0GMU3_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-11
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLLAPNL 56
           MPPELPK LPPRR IDHKIEL+PGT  P +  Y+M P ELAE  KQL++LL   L
Sbjct: 79  MPPELPKKLPPRRDIDHKIELMPGTVAPAQAPYRMAPKELAELRKQLNELLDAGL 133

[Close]

BLAST of MELO3C019185 vs. TrEMBL
Match: A0A087PJF6_9PROT (Uncharacterized protein OS=Acetobacter malorum GN=AmDm5_3101 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MP ELPK LPPR+ +DH IEL PG KPP+K+ Y+M PPEL E  KQL++LL
Sbjct: 436 MPKELPKKLPPRKEVDHAIELEPGAKPPSKSPYRMSPPELEELRKQLNELL 486

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BLAST of MELO3C019185 vs. TrEMBL
Match: A5AZ16_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-10
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MPPELPK LPPRR  DHKIEL PG+KPP    Y+M PPEL E  +QL +LL
Sbjct: 568 MPPELPKRLPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRRQLKELL 618

[Close]

BLAST of MELO3C019185 vs. TrEMBL
Match: A5B3V3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-10
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MPPELPK LPPRR  DHKIEL PG KPP    Y+M PPEL E  +QL +LL
Sbjct: 291 MPPELPKRLPPRREEDHKIELEPGAKPPAMGPYRMAPPELEELRRQLKELL 341

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BLAST of MELO3C019185 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-13
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MP   PKSLPPRR IDH+IELVPGTKP  KNAY+M PPELAE  KQLD+LL
Sbjct: 96  MPDSFPKSLPPRRMIDHEIELVPGTKPRAKNAYRMAPPELAELRKQLDELL 146

[Close]

BLAST of MELO3C019185 vs. NCBI nr
Match: gi|729320756|ref|XP_010533333.1| (PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MP ELPK LPPRRGIDH+IEL+PGTKPP    Y+M PPELAE  +Q++ LL
Sbjct: 623 MPEELPKKLPPRRGIDHQIELIPGTKPPAMAPYRMAPPELAELKRQIEDLL 673

[Close]

BLAST of MELO3C019185 vs. NCBI nr
Match: gi|658026719|ref|XP_008348781.1| (PREDICTED: uncharacterized protein LOC103411949 [Malus domestica])

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-12
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLLAPNLSDLRK 60
           MP ELPK LPPRR +DH IEL PG KPP+K+ Y+M PPEL E  KQL++LL  ++   R+
Sbjct: 842 MPKELPKKLPPRREVDHAIELEPGAKPPSKSPYRMSPPELEELRKQLNELLDQDIGGARQ 901

Query: 61  RLWH 65
            L H
Sbjct: 902 ALAH 905

[Close]

BLAST of MELO3C019185 vs. NCBI nr
Match: gi|729307976|ref|XP_010529090.1| (PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MP ELPK LPPRRGIDH IEL+PG KPP    Y+M PPELAE  +QL+ LL
Sbjct: 609 MPEELPKKLPPRRGIDHAIELIPGAKPPAMPPYRMAPPELAELKRQLEDLL 659

[Close]

BLAST of MELO3C019185 vs. NCBI nr
Match: gi|729349823|ref|XP_010543033.1| (PREDICTED: uncharacterized protein LOC104816062 [Tarenaya hassleriana])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 1   MPPELPKSLPPRRGIDHKIELVPGTKPPTKNAYQMVPPELAEFWKQLDKLL 52
           MP ELPK LPPRRGIDH IEL+PG KPP    Y+M PPELAE  +QL+ LL
Sbjct: 609 MPEELPKKLPPRRGIDHAIELIPGAKPPAMPPYRMAPPELAELKRQLEDLL 659

The following BLAST results are available for this feature:

BLAST of MELO3C019185 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9ZS84_SOLLC	4.3e-11	50.00	Polyprotein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0GMU3_SOLCH	4.3e-11	65.45	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]
A0A087PJF6_9PROT	1.3e-10	64.71	Uncharacterized protein OS=Acetobacter malorum GN=AmDm5_3101 PE=4 SV=1	[more]
A5AZ16_VITVI	1.3e-10	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016761 PE=4 SV=1	[more]
A5B3V3_VITVI	1.6e-10	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041103 PE=4 SV=1	[more]

BLAST of MELO3C019185 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114583\|ref\|XP_008457127.1\|	3.9e-13	76.47	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me...	[more]
gi\|729320756\|ref\|XP_010533333.1\|	3.3e-12	68.63	PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana]	[more]
gi\|658026719\|ref\|XP_008348781.1\|	3.3e-12	57.81	PREDICTED: uncharacterized protein LOC103411949 [Malus domestica]	[more]
gi\|729307976\|ref\|XP_010529090.1\|	1.3e-11	68.63	PREDICTED: uncharacterized protein LOC104806071 [Tarenaya hassleriana]	[more]
gi\|729349823\|ref\|XP_010543033.1\|	1.3e-11	68.63	PREDICTED: uncharacterized protein LOC104816062 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49751	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019185T1	MELO3C019185T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49751	MU49751	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 4..53 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019185	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019185	Watermelon (97103) v2	mewmbB544
MELO3C019185	Cucumber (Gy14) v1	cgymeB449
MELO3C019185	Cucurbita maxima (Rimu)	cmameB613
MELO3C019185	Cucurbita maxima (Rimu)	cmameB810
MELO3C019185	Cucurbita moschata (Rifu)	cmomeB601
MELO3C019185	Cucurbita moschata (Rifu)	cmomeB794
MELO3C019185	Wild cucumber (PI 183967)	cpimeB331
MELO3C019185	Cucumber (Chinese Long) v2	cumeB272
MELO3C019185	Watermelon (Charleston Gray)	mewcgB534
MELO3C019185	Watermelon (97103) v1	mewmB580
MELO3C019185	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C019185	Cucumber (Gy14) v2	cgybmeB286