MELO3C019184 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019184
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ty3/gypsy retrotransposon protein
Location	chr8 : 13934819 .. 13936019 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAATTCTATGGAGTTGATGAAGTTTACACTATAGAAGAATCTATCCTCGTCGTACTAGATAAGTTTGCGGATGTTTTTAACTGGCCTGAGAAGCTACCCGCAAGAAGAAGCATTGAGCATCACATTCACTTAAAAAAGGATACTAATCCTATTAACGTGAGGCCATCTCGATATGCTTACCAACAGAAAGAAGAAATGGATAAACGAGTAGGAGAGATGCTATCTTCTGGAGTAATAAGGCCAAGCATCAGTCCTTATTCAAGCCTAGTGTTATTGGTCAAAAAGAAAGATGGGAGCTGGTGCTTTGTATGGATTACAGAGCACTAAATAATGTGACTATACTAGACAAATTTTCCATATCTTTCATTCAAGAGTTATTCGACGAATTGAATGGAGCATACAAATTGAGATTTAAAAGCCAGTTATCACCAAATACGCATGAGTGAGAATGATATAGAGAAAACAGCATTCCGAACACATGAAGGGCACTATGAGTTCTTAGTTATGCTGTTTGGGCTAACTAATGCACCAGCCACGTTTTAGTCCTTAATGAACGCGATATTCCGGCCACTTGAGGAAGCTTGTGTTAGTCTTTTTTGATGACATACTGATCTATAGTAAGAGCCTAAAAGAACACTTGAAGCATCCGAAAATAGTGTTAACAATGTTGAGGGAGCATGAGCTCTATGAGAATAAGAAGAAATGTAGTTTTGCAAAGTCAAGAGTAGAGTACTTGGGGCACGTAATCTCAAGGAAAGGAGTTGAAGTGGACCCCGAGAAGATCAGATCTATTGTTGAATGGCCAAGTCCTACTAATGTTAAAGAGGTGCGTGGATTTTTGGGATTGACTGGCTACTATAGAAGGTTTGTGCATCAGTATGGCTCTATGGCTGCACCATTAACACAACTGCTGAAAAATGGGGCATTCAAATGGACAATAGAAACTGAAGAAGCATTTGTGAAACTAAAGAATGCCATGATGACTCTTCCGATGTTAGCTTTACCTGACTTCAGCTTGCCTTTCGAGATTGAAACTGATGCTTCAGGCTATGGCATAGGGGCAGTGCTAATTCAAGCTAAACATCCAATTGCCTATTACAACCATACATTGGCATTGAGAGATAGAGCACGAAAGGGAATTAATGGCTGTTATGTTTGCAGTACAGAGATGGAGATCTTACGTGTTGGGAGCTAA

mRNA sequence

ATGGCCGAATTCTATGGAGTTGATGAAGTTTACACTATAGAAGAATCTATCCTCGTCGTACTAGATAAGTTTGCGGATGTTTTTAACTGGCCTGAGAAGCTACCCGCAAGAAGAAGCATTGAGCATCACATTCACTTAAAAAAGGATACTAATCCTATTAACGTGAGGCCATCTCGATATGCTTACCAACAGAAAGAAGAAATGGATAAACGAGTAGGAGAGATGCTATCTTCTGGAGTAATAAGGCCAAGCATCAGTCCTTATTCAAGCCTAGTGTTATTGGTCAAAAAGAAAGATGGGAGCTGTAAGAGCCTAAAAGAACACTTGAAGCATCCGAAAATAGTGTTAACAATGTTGAGGGAGCATGAGCTCTATGAGAATAAGAAGAAATGTAGTTTTGCAAAGTCAAGAGTAGAGTACTTGGGGCACGTAATCTCAAGGAAAGGAGTTGAAGTGGACCCCGAGAAGATCAGATCTATTGTTGAATGGCCAAGTCCTACTAATGTTAAAGAGGTGCGTGGATTTTTGGGATTGACTGGCTACTATAGAAGGTTTGTGCATCAGTATGGCTCTATGGCTGCACCATTAACACAACTGCTGAAAAATGGGGCATTCAAATGGACAATAGAAACTGAAGAAGCATTTGTGAAACTAAAGAATGCCATGATGACTCTTCCGATGTTAGCTTTACCTGACTTCAGCTTGCCTTTCGAGATTGAAACTGATGCTTCAGGCTATGGCATAGGGGCAGTGCTAATTCAAGCTAAACATCCAATTGCCTATTACAACCATACATTGGCATTGAGAGATAGAGCACGAAAGGGAATTAATGGCTGTTATGTTTGCAGTACAGAGATGGAGATCTTACGTGTTGGGAGCTAA

Coding sequence (CDS)

ATGGCCGAATTCTATGGAGTTGATGAAGTTTACACTATAGAAGAATCTATCCTCGTCGTACTAGATAAGTTTGCGGATGTTTTTAACTGGCCTGAGAAGCTACCCGCAAGAAGAAGCATTGAGCATCACATTCACTTAAAAAAGGATACTAATCCTATTAACGTGAGGCCATCTCGATATGCTTACCAACAGAAAGAAGAAATGGATAAACGAGTAGGAGAGATGCTATCTTCTGGAGTAATAAGGCCAAGCATCAGTCCTTATTCAAGCCTAGTGTTATTGGTCAAAAAGAAAGATGGGAGCTGTAAGAGCCTAAAAGAACACTTGAAGCATCCGAAAATAGTGTTAACAATGTTGAGGGAGCATGAGCTCTATGAGAATAAGAAGAAATGTAGTTTTGCAAAGTCAAGAGTAGAGTACTTGGGGCACGTAATCTCAAGGAAAGGAGTTGAAGTGGACCCCGAGAAGATCAGATCTATTGTTGAATGGCCAAGTCCTACTAATGTTAAAGAGGTGCGTGGATTTTTGGGATTGACTGGCTACTATAGAAGGTTTGTGCATCAGTATGGCTCTATGGCTGCACCATTAACACAACTGCTGAAAAATGGGGCATTCAAATGGACAATAGAAACTGAAGAAGCATTTGTGAAACTAAAGAATGCCATGATGACTCTTCCGATGTTAGCTTTACCTGACTTCAGCTTGCCTTTCGAGATTGAAACTGATGCTTCAGGCTATGGCATAGGGGCAGTGCTAATTCAAGCTAAACATCCAATTGCCTATTACAACCATACATTGGCATTGAGAGATAGAGCACGAAAGGGAATTAATGGCTGTTATGTTTGCAGTACAGAGATGGAGATCTTACGTGTTGGGAGCTAA

Protein sequence

MAEFYGVDEVYTIEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSGVIRPSISPYSSLVLLVKKKDGSCKSLKEHLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTLALRDRARKGINGCYVCSTEMEILRVGS*

Homology

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BLAST of MELO3C019184 vs. Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-34
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 1


Query: 109 LKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGH--VISRKGVEVDPEKIRSIVEWPSP 168
           + H  +VL +  +H+ Y N+KKC+F + ++ YLGH  +IS +GV  DP K+ ++V WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 169 TNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLP 228
            N  E+RGFLGLTGYYRRFV  YG +  PLT+LLK  + KWT     AF  LK A+ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 229 MLALPDFSLPF 238
           +LALPD  LPF
Sbjct: 121 VLALPDLKLPF 131

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BLAST of MELO3C019184 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-31
Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 1


Query: 104 SLKEHLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEW 163
           SL EHL   ++V T L +  L     KC F K    +LGH+++  G++ +P K+++IV +
Sbjct: 373 SLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSY 432

Query: 164 PSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWT--IETEEAFVKLKNA 223
           P PT  KE+R FLGLTGYYR+F+  Y  +A P+T  LK      T  +E  EAF KLK  
Sbjct: 433 PIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKAL 492

Query: 224 MMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTL 267
           ++  P+L LPDF   F + TDAS   +GAVL Q  HPI++ + TL
Sbjct: 493 IIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTL 537

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BLAST of MELO3C019184 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-29
Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = 1


Query: 104 SLKEHLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEW 163
           SL EHL+   +V   L +  L     KC F K    +LGHV++  G++ +PEKI +I ++
Sbjct: 374 SLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKY 433

Query: 164 PSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTI--ETEEAFVKLKNA 223
           P PT  KE++ FLGLTGYYR+F+  +  +A P+T+ LK      T   E + AF KLK  
Sbjct: 434 PIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYL 493

Query: 224 MMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTL 267
           +   P+L +PDF+  F + TDAS   +GAVL Q  HP++Y + TL
Sbjct: 494 ISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTL 538

HSP 2 Score: 47.4 bits (111), Expect = 3.2e-04
Identity = 40/152 (26.32%), Postives = 77/152 (50.66%), Query Frame = 1


Query: 14  EESILVVLDKFADV-FNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQ--KEEMDK 73
           ++ +  +L K+ D+ ++  +KL      +H I+ K +  P+    S+Y+Y Q  ++E++ 
Sbjct: 170 KQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNL-PLY---SKYSYPQAYEQEVES 229

Query: 74  RVGEMLSSGVIRPSISPYSSLVLLV-KKKDGSCK-SLKEHLKHPKIVLTMLREHELYENK 133
           ++ +ML+ G+IR S SPY+S + +V KK+D S K   +  + + K+    + +     N 
Sbjct: 230 QIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNM 289

Query: 134 KKCSFAKSRVEYLGHVISRKG---VEVDPEKI 158
            +      R  Y   +   KG   +E+DPE +
Sbjct: 290 DEILGKLGRCNYFTTIDLAKGFHQIEMDPESV 317

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BLAST of MELO3C019184 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-26
Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = 1


Query: 108 HLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPT 167
           H K+ ++VL  L +  L  N +K  F  ++VE+LG++++  G++ DP+K+R+I E P PT
Sbjct: 294 HWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPT 353

Query: 168 NVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLK--------NGAFKWTIETEE----AF 227
           +VKE++ FLG+T YYR+F+  Y  +A PLT L +        + + K  I  +E    +F
Sbjct: 354 SVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSF 413

Query: 228 VKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQ----AKHPIAYYNHTL 267
             LK+ + +  +LA P F+ PF + TDAS + IGAVL Q       PIAY + +L
Sbjct: 414 NDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSL 468

HSP 2 Score: 43.9 bits (102), Expect = 3.5e-03
Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 1


Query: 14  EESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTN---PINVRPSRYAYQQKEEMDK 73
           +E +  +L +F  +F  P    +  S+E  +  +  TN   PI  +   Y    + E+++
Sbjct: 85  QEILNSLLGEFPRIFEPPL---SGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVER 144

Query: 74  RVGEMLSSGVIRPSISPYSSLVLLVKKK 99
           ++ E+L  G+IRPS SPY+S + +V KK
Sbjct: 145 QIDELLQDGIIRPSNSPYNSPIWIVPKK 169

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BLAST of MELO3C019184 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-26
Identity = 69/173 (39.88%), Postives = 100/173 (57.80%), Query Frame = 1


Query: 107 EHLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSP 166
           +H++H   VL  L +  +  +++K  F K  VEYLG ++S+ G + DPEK+++I E+P P
Sbjct: 352 DHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEP 411

Query: 167 TNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLK--NGAF------KWTIETEE----A 226
             V +VR FLGL  YYR F+  + ++A P+T +LK  NG+       K  +E  E    A
Sbjct: 412 DCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNA 471

Query: 227 FVKLKNAMMTLP-MLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTL 267
           F +L+N + +   +L  PDF  PF++ TDAS  GIGAVL Q   PI   + TL
Sbjct: 472 FQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTL 524

HSP 2 Score: 32.7 bits (73), Expect = 8.1e+00
Identity = 17/50 (34.00%), Postives = 26/50 (52.00%), Query Frame = 1


Query: 49  DTNPINVRPSRYAYQQKEEMDKRVGEMLSSGVIRPSISPYSSLVLLVKKK 99
           D  P+  R         + ++  V ++L  G+IRPS SPY+S   +V KK
Sbjct: 178 DNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKK 227

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BLAST of MELO3C019184 vs. TrEMBL
Match: T1LIH7_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.8e-70
Identity = 139/292 (47.60%), Postives = 189/292 (64.73%), Query Frame = 1


Query: 12  TIEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKR 71
           TI   + VV+D+FADVFN P+ LP  R ++H IHL     P+NVRP RY+  QK+E++K+
Sbjct: 481 TIHPEVQVVIDEFADVFNDPKSLPPTRPLDHAIHLIPGAVPVNVRPYRYSPLQKDEIEKQ 540

Query: 72  VGEMLSSGVIRPSISPYSSLVLLVKKKDGSCK---------------------------- 131
           V EML +G+I PS+SP++S VLLVKKKDG+ +                            
Sbjct: 541 VAEMLEAGLITPSVSPFASPVLLVKKKDGTWRFCVDYRKLNSITVKRNRKCVVIFMDDIL 600

Query: 132 ----SLKEHLKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRS 191
               SL+EH+ H + V  +LRE++ Y    KC+FA+ ++EYLGH+IS +GV  D EK + 
Sbjct: 601 VFSESLEEHVNHLREVFQVLRENQFYAKLSKCTFAQQKLEYLGHIISDEGVATDHEKTKV 660

Query: 192 IVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETEEAFVKLK 251
           +++WP P NV E+ GFLGLTGYYR+FV  YG +A PLTQLL+  +F W+ E   AF KLK
Sbjct: 661 MMDWPVPQNVTELSGFLGLTGYYRKFVRHYGIIAKPLTQLLQKNSFAWSDEAHLAFDKLK 720

Query: 252 NAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTLALRDR 272
            AM T P+L LPDF+  F IETDA   GIGAVLIQ  HP+A+Y+  L ++++
Sbjct: 721 LAMSTTPVLGLPDFNKQFTIETDACSTGIGAVLIQDAHPVAFYSKALGIKNQ 772

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BLAST of MELO3C019184 vs. TrEMBL
Match: Q2QSA6_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g24780 PE=4 SV=2)

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 1


Query: 20  VLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSG 79
           +L  F D+F  P  LP +R+ +H I LK D  P+ VRP RY    K+E++++   M+  G
Sbjct: 444 LLATFGDLFAEPTGLPPQRAHDHCIILKPDAQPVAVRPYRYPAAHKDELERQCAAMIEQG 503

Query: 80  VIRPSISPYSSLVLLVKKKDGS---CKSLK-------EHLKHPKIVLTMLREHELYENKK 139
           +IR S SP+SS VLLV+K DG+   C   +       +HL+H + VLT LR H L+  + 
Sbjct: 504 IIRRSDSPFSSPVLLVRKPDGTWRFCVDYRALNALTADHLRHLRAVLTDLRRHHLFVKRT 563

Query: 140 KCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQY 199
           KCSF+   V YLGHVIS  GV +DP K+++I +WP+  + + VRGFLGL GYYR+FVH Y
Sbjct: 564 KCSFSAPSVAYLGHVISAAGVAMDPSKVQAIRDWPARRSPRAVRGFLGLAGYYRKFVHNY 623

Query: 200 GSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIG 259
           G++AAPLT LLK   F W      A   LK A+ T P+LA+PDF+  F +E DAS +G G
Sbjct: 624 GTVAAPLTALLKKDGFSWVEAAAVALAALKTAVTTAPVLAIPDFAKLFIVECDASSHGFG 683

Query: 260 AVLIQAKHPIAYYNHTLALRDRA 273
           AVL Q  HP+A+++  +A   RA
Sbjct: 684 AVLTQEGHPVAFFSRPVAPHHRA 706

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BLAST of MELO3C019184 vs. TrEMBL
Match: Q7XTQ1_ORYSJ (OSJNBa0041A02.23 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0041A02.23 PE=4 SV=2)

HSP 1 Score: 233.4 bits (594), Expect = 3.5e-58
Identity = 127/301 (42.19%), Postives = 171/301 (56.81%), Query Frame = 1


Query: 13  IEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRV 72
           + +S+  +L  FA+VF  P+ LP RR  +H I LK    P N RP R  +QQK  M++ +
Sbjct: 622 VPDSVATILAGFAEVFAEPKGLPPRRECDHAIPLKMGAEPPNQRPYRVPHQQKNAMEEII 681

Query: 73  GEMLSSGVIRPSISPYSSLVLLVKKKDGS-----------CKSLKEHLKHP--------- 132
            E+L S  IRP++SPYSS  ++V+K+DGS            +++K     P         
Sbjct: 682 KELLESEEIRPNLSPYSSPAVMVRKRDGSWRMCVDYRQLNARTIKNKFPMPIVEDLLDEL 741

Query: 133 ------------------------KIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRK 192
                                   + VL++LR H+LY  + KC+FA   VEYLGH++S +
Sbjct: 742 NGAKVFSKLDLRSGKNLEEHEKQLQCVLSILRSHKLYAKRSKCTFAAPSVEYLGHIVSGE 801

Query: 193 GVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWT 252
           GV   P KI+ ++EW  P N+ ++RGFL LTGYYRRFV  YG++  PL  LLK   F W 
Sbjct: 802 GVATKPSKIKDVLEWAVPVNITKLRGFLRLTGYYRRFVQGYGAICRPLHDLLKKDNFHWG 861

Query: 253 IETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTLAL 270
            E ++AF +LK  M T P+LALPDFS PF +ETDA G  IGAVLIQ   PIAYY+  L  
Sbjct: 862 PEQQKAFDQLKKIMTTCPVLALPDFSKPFVLETDACGSSIGAVLIQEGRPIAYYSKALGQ 921

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BLAST of MELO3C019184 vs. TrEMBL
Match: A0A151RAV0_CAJCA (Retrovirus-related Pol polyprotein from transposon 297 family (Fragment) OS=Cajanus cajan GN=KK1_039001 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.8e-58
Identity = 115/252 (45.63%), Postives = 162/252 (64.29%), Query Frame = 1


Query: 21  LDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSGV 80
           L ++A VF  P  LP  R  +HHI L+  ++PINV+P  Y + QKE M + + EML+ G+
Sbjct: 353 LPQYAWVFQTPTGLPPSRPHDHHIRLQPHSSPINVKPYIYPHHQKEAMTQMIKEMLTEGI 412

Query: 81  IRPSISPYSSLVLLVKKKDGSC---KSLKEHLKHPKIVLTMLREHELYENKKKCSFAKSR 140
           IRPS SP+SS +LLVK  D       S   HL H   +L +L  ++ +  + KC F    
Sbjct: 413 IRPSTSPFSSPILLVKFFDDILVYSTSFIAHLLHLHSILDLLLINQFFAKRSKCFFGVEC 472

Query: 141 VEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLT 200
           V YLGH I   GV+ DPEK+++I++WP P +   +RGFLG+TG+YRRFV  Y  +A PLT
Sbjct: 473 VTYLGHTIIESGVQHDPEKVKAIIDWPVPLSFTSLRGFLGITGFYRRFVRHYAIIATPLT 532

Query: 201 QLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKH 260
           +LLK+  F WT   ++AF +LK  + T P+L LPDFS PF +ET+ASG  +GAVL Q  H
Sbjct: 533 ELLKDSKFIWTTPAQQAFTELKQHITTAPILQLPDFSKPFVVETNASGVAVGAVLSQDHH 592

Query: 261 PIAYYNHTLALR 270
           P+A++++ L  +
Sbjct: 593 PLAFFSNKLCTK 604

[Close]

BLAST of MELO3C019184 vs. TrEMBL
Match: A0A151SG20_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_024262 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 5.2e-54
Identity = 107/245 (43.67%), Postives = 161/245 (65.71%), Query Frame = 1


Query: 17  ILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEML 76
           I+++L +F  VF+ P+ LP  R  +H I L  DT P+ VR  RY +  K +++K V E+L
Sbjct: 2   IMIILRQFHSVFSIPQGLPPVRPHDHSISLLPDTTPVKVRLYRYPFSYKAKIEKIVQELL 61

Query: 77  SSGVIRPSISPYSSLVLLVKKKDGSC----KSLKEHLKHPKIVLTMLREHELYENKKKCS 136
             G+I+ S +P+SS V+LVKK          +  +HL H K +L ++++H+L+    KC 
Sbjct: 62  QDGLIQHSTNPFSSPVILVKKFFYDIHIYSNTWVDHLGHLKTILGLMQQHQLHVKLAKCV 121

Query: 137 FAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSM 196
           F  S++ YLGH++S +GV +DP+K+ +I+ WP P  +K++ GFLGLT YY RF+  Y S+
Sbjct: 122 FGTSQIAYLGHMVSSRGVFMDPDKVSAIINWPPPRTLKQLHGFLGLTSYYCRFIRNYASL 181

Query: 197 AAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVL 256
           A+ L  LL+N AF W   T+ AF KLK A+    +L+LPDF++PFE+ETDAS  G+GA+L
Sbjct: 182 ASSLHSLLQNDAFGWNTTTQMAFEKLKQAISQALVLSLPDFTMPFELETDASSVGVGAIL 241

Query: 257 IQAKH 258
            + KH
Sbjct: 242 SERKH 246

[Close]

BLAST of MELO3C019184 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-35
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 1


Query: 109 LKHPKIVLTMLREHELYENKKKCSFAKSRVEYLGH--VISRKGVEVDPEKIRSIVEWPSP 168
           + H  +VL +  +H+ Y N+KKC+F + ++ YLGH  +IS +GV  DP K+ ++V WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 169 TNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLP 228
            N  E+RGFLGLTGYYRRFV  YG +  PLT+LLK  + KWT     AF  LK A+ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 229 MLALPDFSLPF 238
           +LALPD  LPF
Sbjct: 121 VLALPDLKLPF 131

[Close]

BLAST of MELO3C019184 vs. NCBI nr
Match: gi|802796090|ref|XP_012092676.1| (PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas])

HSP 1 Score: 250.0 bits (637), Expect = 5.2e-63
Identity = 130/250 (52.00%), Postives = 172/250 (68.80%), Query Frame = 1


Query: 20  VLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSG 79
           +L   A VF     LP RRS +H I L+    PI+V+P RY + QK+E+++ V +MLS+G
Sbjct: 161 LLAAHAFVFQEIYGLPPRRSTDHRIALQPGQGPISVKPYRYGHIQKDEIERLVHDMLSAG 220

Query: 80  VIRPSISPYSSLVLLVKKKD-------GSCKSLKEHLKHPKIVLTMLREHELYENKKKCS 139
           +I+PS SPYSS VLLVKKKD       G   S   HLKH K+VL +L +++L  N+KKC 
Sbjct: 221 IIKPSSSPYSSPVLLVKKKDVFFDDILGGSNSWGSHLKHLKLVLQLLCDNKLQLNQKKCF 280

Query: 140 FAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSM 199
           F +  VEYLGH+IS+ GV +DP K+ SI++WP P + K VRGFLG+TGYYRRF+  YG +
Sbjct: 281 FGRKLVEYLGHIISKDGVAMDPSKVSSILQWPIPKSTKAVRGFLGITGYYRRFIANYGQL 340

Query: 200 AAPLTQLLKN--GAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGA 259
           A PLT LLK+    F W  + ++AF+ LK+AM T P+LA+PDFS PF +ETDAS  GI A
Sbjct: 341 ARPLTTLLKDAQAKFAWPQDAQDAFIALKHAMTTSPVLAMPDFSKPFIVETDASKSGIWA 400

Query: 260 VLIQAKHPIA 261
           VL+Q   P+A
Sbjct: 401 VLLQDTRPLA 410

[Close]

BLAST of MELO3C019184 vs. NCBI nr
Match: gi|1009110159|ref|XP_015894038.1| (PREDICTED: uncharacterized protein LOC107428088 [Ziziphus jujuba])

HSP 1 Score: 246.1 bits (627), Expect = 7.5e-62
Identity = 126/250 (50.40%), Postives = 166/250 (66.40%), Query Frame = 1


Query: 20  VLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSG 79
           +L KF  VF  P  LP +RS +H I L  ++ P+NVRP RY + QK E++K V E+L  G
Sbjct: 465 LLSKFPVVFQNPTTLPQQRSHDHRIQLLANSPPVNVRPYRYPHYQKAEIEKIVRELLQIG 524

Query: 80  VIRPSISPYSSLVLLVKKKDGSCKSLKEHLKHPKIVLTMLREHELYENKKKCSFAKSRVE 139
           +IRPS S +SS VLLVKK  G C   +EHL H   VL++L  + L+  + KC F  + VE
Sbjct: 525 LIRPSHSLFSSPVLLVKKASGEC--WEEHLSHLHTVLSILAANHLFAKESKCVFGVTTVE 584

Query: 140 YLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQL 199
           YLGH+IS   V  DP K+++  EWP+P+ ++EV GFLGL GYYR+F+  +G +A PLT+L
Sbjct: 585 YLGHIISSAEVSADPVKVQNFREWPTPSTIREVCGFLGLAGYYRKFIKHFGGIAPPLTKL 644

Query: 200 LKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPI 259
           L    F WT E + AF +LK A+ T P+LALPDFS PF IE DASG GIGAVL Q   P+
Sbjct: 645 LSKEGFHWTQECDVAFQQLKTALTTAPVLALPDFSQPFVIECDASGIGIGAVLSQNGRPL 704

Query: 260 AYYNHTLALR 270
           AY++    +R
Sbjct: 705 AYFSQARLVR 712

[Close]

BLAST of MELO3C019184 vs. NCBI nr
Match: gi|108862596|gb|ABA97714.2| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59
Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 1


Query: 20  VLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSG 79
           +L  F D+F  P  LP +R+ +H I LK D  P+ VRP RY    K+E++++   M+  G
Sbjct: 444 LLATFGDLFAEPTGLPPQRAHDHCIILKPDAQPVAVRPYRYPAAHKDELERQCAAMIEQG 503

Query: 80  VIRPSISPYSSLVLLVKKKDGS---CKSLK-------EHLKHPKIVLTMLREHELYENKK 139
           +IR S SP+SS VLLV+K DG+   C   +       +HL+H + VLT LR H L+  + 
Sbjct: 504 IIRRSDSPFSSPVLLVRKPDGTWRFCVDYRALNALTADHLRHLRAVLTDLRRHHLFVKRT 563

Query: 140 KCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQY 199
           KCSF+   V YLGHVIS  GV +DP K+++I +WP+  + + VRGFLGL GYYR+FVH Y
Sbjct: 564 KCSFSAPSVAYLGHVISAAGVAMDPSKVQAIRDWPARRSPRAVRGFLGLAGYYRKFVHNY 623

Query: 200 GSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIG 259
           G++AAPLT LLK   F W      A   LK A+ T P+LA+PDF+  F +E DAS +G G
Sbjct: 624 GTVAAPLTALLKKDGFSWVEAAAVALAALKTAVTTAPVLAIPDFAKLFIVECDASSHGFG 683

Query: 260 AVLIQAKHPIAYYNHTLALRDRA 273
           AVL Q  HP+A+++  +A   RA
Sbjct: 684 AVLTQEGHPVAFFSRPVAPHHRA 706

[Close]

BLAST of MELO3C019184 vs. NCBI nr
Match: gi|922546760|ref|XP_013601199.1| (PREDICTED: uncharacterized protein LOC106308599 [Brassica oleracea var. oleracea])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 128/276 (46.38%), Postives = 168/276 (60.87%), Query Frame = 1


Query: 29  NW-----PEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRVGEMLSSGVIRP 88
           NW     P  LP  R IEH I LK+ T+PINV P RY Y QK+E++++V EML++G+I+ 
Sbjct: 110 NWIWKTTPHGLPPVRDIEHTITLKEGTDPINVHPYRYTYFQKDEIERKVAEMLNAGIIQS 169

Query: 89  SISPYSSLVLLVKKKDGSCKSLKEH---------------------------LKHPKIVL 148
             SP+SS VLLVKKKDGS  S + H                           L+H + VL
Sbjct: 170 RSSPFSSHVLLVKKKDGSGGSHERHLSPSHEEVFVLVFFDDILIYSLTWEANLQHVREVL 229

Query: 149 TMLREHELYENKKKCSFAKSRVEYLGHVISRKGVEVDPEKIRSIVEWPSPTNVKEVRGFL 208
            ++++H+L    KKC F K  +EYLG++IS   V V   K+R++ +WP PT + E+  FL
Sbjct: 230 RLIQQHKLSVKLKKCEFGKRELEYLGNIISNTSVTVVQSKVRAMTDWPFPTTITELCCFL 289

Query: 209 GLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWTIETEEAFVKLKNAMMTLPMLALPDFSLP 268
           GLTGYYR+FV  YG +A PLT LL+ G F W+ E +  F  LK  M T P LALPDFS P
Sbjct: 290 GLTGYYRKFVRDYGLIARPLTNLLRKGKFLWSSEADADFNNLKREMTTTPTLALPDFSKP 349

Query: 269 FEIETDASGYGIGAVLIQAKHPIAYYNHTLALRDRA 273
           F I+TDASG GIGAVL QA   IA+ + +L +  +A
Sbjct: 350 FVIKTDASGEGIGAVLSQAGQQIAFMSRSLGVTKKA 385

[Close]

BLAST of MELO3C019184 vs. NCBI nr
Match: gi|38344156|emb|CAD41876.2| (OSJNBa0041A02.23 [Oryza sativa Japonica Group])

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 127/301 (42.19%), Postives = 171/301 (56.81%), Query Frame = 1


Query: 13  IEESILVVLDKFADVFNWPEKLPARRSIEHHIHLKKDTNPINVRPSRYAYQQKEEMDKRV 72
           + +S+  +L  FA+VF  P+ LP RR  +H I LK    P N RP R  +QQK  M++ +
Sbjct: 622 VPDSVATILAGFAEVFAEPKGLPPRRECDHAIPLKMGAEPPNQRPYRVPHQQKNAMEEII 681

Query: 73  GEMLSSGVIRPSISPYSSLVLLVKKKDGS-----------CKSLKEHLKHP--------- 132
            E+L S  IRP++SPYSS  ++V+K+DGS            +++K     P         
Sbjct: 682 KELLESEEIRPNLSPYSSPAVMVRKRDGSWRMCVDYRQLNARTIKNKFPMPIVEDLLDEL 741

Query: 133 ------------------------KIVLTMLREHELYENKKKCSFAKSRVEYLGHVISRK 192
                                   + VL++LR H+LY  + KC+FA   VEYLGH++S +
Sbjct: 742 NGAKVFSKLDLRSGKNLEEHEKQLQCVLSILRSHKLYAKRSKCTFAAPSVEYLGHIVSGE 801

Query: 193 GVEVDPEKIRSIVEWPSPTNVKEVRGFLGLTGYYRRFVHQYGSMAAPLTQLLKNGAFKWT 252
           GV   P KI+ ++EW  P N+ ++RGFL LTGYYRRFV  YG++  PL  LLK   F W 
Sbjct: 802 GVATKPSKIKDVLEWAVPVNITKLRGFLRLTGYYRRFVQGYGAICRPLHDLLKKDNFHWG 861

Query: 253 IETEEAFVKLKNAMMTLPMLALPDFSLPFEIETDASGYGIGAVLIQAKHPIAYYNHTLAL 270
            E ++AF +LK  M T P+LALPDFS PF +ETDA G  IGAVLIQ   PIAYY+  L  
Sbjct: 862 PEQQKAFDQLKKIMTTCPVLALPDFSKPFVLETDACGSSIGAVLIQEGRPIAYYSKALGQ 921

The following BLAST results are available for this feature:

BLAST of MELO3C019184 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M860_ARATH	5.1e-34	51.91	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg0...	[more]
POL2_DROME	2.3e-31	43.64	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL3_DROME	2.2e-29	41.82	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POL5_DROME	2.3e-26	38.29	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
POLY_DROME	5.1e-26	39.88	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of MELO3C019184 vs. TrEMBL


Match Name	E-value	Identity	Description
T1LIH7_TRIUA	6.8e-70	47.60	Uncharacterized protein OS=Triticum urartu PE=4 SV=1	[more]
Q2QSA6_ORYSJ	1.4e-59	46.39	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
Q7XTQ1_ORYSJ	3.5e-58	42.19	OSJNBa0041A02.23 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0041A02.23 PE=...	[more]
A0A151RAV0_CAJCA	7.8e-58	45.63	Retrovirus-related Pol polyprotein from transposon 297 family (Fragment) OS=Caja...	[more]
A0A151SG20_CAJCA	5.2e-54	43.67	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_024262 PE=4 SV=1	[more]

BLAST of MELO3C019184 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	2.8e-35	51.91	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of MELO3C019184 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802796090\|ref\|XP_012092676.1\|	5.2e-63	52.00	PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]	[more]
gi\|1009110159\|ref\|XP_015894038.1\|	7.5e-62	50.40	PREDICTED: uncharacterized protein LOC107428088 [Ziziphus jujuba]	[more]
gi\|108862596\|gb\|ABA97714.2\|	2.0e-59	46.39	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
gi\|922546760\|ref\|XP_013601199.1\|	1.3e-58	46.38	PREDICTED: uncharacterized protein LOC106308599 [Brassica oleracea var. oleracea...	[more]
gi\|38344156\|emb\|CAD41876.2\|	5.0e-58	42.19	OSJNBa0041A02.23 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49751	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019184T1	MELO3C019184T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49751	MU49751	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 46..103 score: 4.5
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 103..273 score: 7.8
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 103..273 score: 7.8
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 21..267 score: 5.52

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019184	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C019184	Cucumber (Gy14) v2	cgybmeB286
MELO3C019184	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019184	Watermelon (97103) v2	mewmbB544
MELO3C019184	Cucumber (Gy14) v1	cgymeB449
MELO3C019184	Cucurbita maxima (Rimu)	cmameB613
MELO3C019184	Cucurbita maxima (Rimu)	cmameB810
MELO3C019184	Cucurbita moschata (Rifu)	cmomeB601
MELO3C019184	Cucurbita moschata (Rifu)	cmomeB794
MELO3C019184	Wild cucumber (PI 183967)	cpimeB331
MELO3C019184	Cucumber (Chinese Long) v2	cumeB272
MELO3C019184	Watermelon (Charleston Gray)	mewcgB534
MELO3C019184	Watermelon (97103) v1	mewmB580