MELO3C019176.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019176.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ubiquitin carboxyl-terminal hydrolase 6
Location	chr08 : 15233993 .. 15234151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

mRNA sequence

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

Coding sequence (CDS)

ATGGTGAGTGTAAAGTGGCAAAAAGAGTTGTTTCGTGATGTTGAAATTGATACCAGTCTGCCCCCATATTATTTGAAAGGCCAGTTGTTTAAACTCACCGGTGTGCCTCCTGAACGGCAGAAGATTATGATTAAGGGTTGTATACTAAAGGTTACTTGA

Protein sequence

MVSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILKVT

Homology

[Close]

BLAST of MELO3C019176.2 vs. NCBI nr
Match: XP_004141674.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis sativus] >KGN45539.1 hypothetical protein Csa_7G451940 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. NCBI nr
Match: XP_008462369.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. NCBI nr
Match: XP_022953492.1 (ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cucurbita moschata] >XP_022953493.1 ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFQDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. NCBI nr
Match: XP_023547864.1 (ubiquitin carboxyl-terminal hydrolase 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFQDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. NCBI nr
Match: XP_022964137.1 (ubiquitin carboxyl-terminal hydrolase 6-like [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 8.1e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKEL RDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELLRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. TAIR10
Match: AT1G51710.1 (ubiquitin-specific protease 6)

HSP 1 Score: 76.3 bits (186), Expect = 6.4e-15
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++   +EID SLPPY  K QL+ LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176.2 vs. TAIR10
Match: AT3G21280.1 (ubiquitin-specific protease 7)

HSP 1 Score: 76.3 bits (186), Expect = 6.4e-15
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 2   VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
           VSVKWQK++F  +EIDTS PP+  K QL+ L+GVPPERQKIM+KG +LK
Sbjct: 59  VSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLK 107

[Close]

BLAST of MELO3C019176.2 vs. Swiss-Prot
Match: sp|Q949Y0|UBP6_ARATH (Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana OX=3702 GN=UBP6 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++   +EID SLPPY  K QL+ LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176.2 vs. Swiss-Prot
Match: sp|Q84WC6|UBP7_ARATH (Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana OX=3702 GN=UBP7 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-13
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQK++F  +EIDTS PP+  K QL+ L+GVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176.2 vs. Swiss-Prot
Match: sp|Q0IIF7|UBP14_BOVIN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus OX=9913 GN=USP14 PE=2 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-09
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176.2 vs. Swiss-Prot
Match: sp|P54578|UBP14_HUMAN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens OX=9606 GN=USP14 PE=1 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-09
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176.2 vs. Swiss-Prot
Match: sp|Q9JMA1|UBP14_MOUSE (Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus OX=10090 GN=Usp14 PE=1 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-09
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          V+VKW KE F  VE++T  PP   K QLF LTGV P RQK+M+KG  LK
Sbjct: 6  VTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK 54

[Close]

BLAST of MELO3C019176.2 vs. TrEMBL
Match: tr|A0A1S3CIC3|A0A1S3CIC3_CUCME (ubiquitin carboxyl-terminal hydrolase 6 OS=Cucumis melo OX=3656 GN=LOC103500742 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. TrEMBL
Match: tr|A0A0A0K9N4|A0A0A0K9N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451940 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELFRDVEIDTSLPPY  KGQLF+LTGVPPERQKIM+KG ILK
Sbjct: 4  VSVKWQKELFRDVEIDTSLPPYVFKGQLFELTGVPPERQKIMVKGGILK 52

[Close]

BLAST of MELO3C019176.2 vs. TrEMBL
Match: tr|A0A072TN68|A0A072TN68_MEDTR (Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula OX=3880 GN=25500399 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 1   MVSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
           +VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 77  IVSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 126

[Close]

BLAST of MELO3C019176.2 vs. TrEMBL
Match: tr|A0A1S2YUY9|A0A1S2YUY9_CICAR (ubiquitin carboxyl-terminal hydrolase 6-like OS=Cicer arietinum OX=3827 GN=LOC101499834 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKELF+DVEIDTS PPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKELFKDVEIDTSQPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 52

[Close]

BLAST of MELO3C019176.2 vs. TrEMBL
Match: tr|A0A2I0LFJ5|A0A2I0LFJ5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000149 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 2  VSVKWQKELFRDVEIDTSLPPYYLKGQLFKLTGVPPERQKIMIKGCILK 51
          VSVKWQKE+F DVEIDTSLPPY  K QLF LTGVPPERQKIM+KG +LK
Sbjct: 4  VSVKWQKEVFPDVEIDTSLPPYVFKCQLFDLTGVPPERQKIMVKGGLLK 52

The following BLAST results are available for this feature:

BLAST of MELO3C019176.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141674.1	1.6e-16	89.80	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis sativus] >KGN45539.1...	[more]
XP_008462369.1	1.6e-16	89.80	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Cucumis melo]	[more]
XP_022953492.1	4.8e-16	87.76	ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cucurbita moschata] >XP...	[more]
XP_023547864.1	4.8e-16	87.76	ubiquitin carboxyl-terminal hydrolase 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964137.1	8.1e-16	87.76	ubiquitin carboxyl-terminal hydrolase 6-like [Cucurbita moschata]	[more]

BLAST of MELO3C019176.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G51710.1	6.4e-15	69.39	ubiquitin-specific protease 6	[more]
AT3G21280.1	6.4e-15	67.35	ubiquitin-specific protease 7	[more]

BLAST of MELO3C019176.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q949Y0\|UBP6_ARATH	1.2e-13	69.39	Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana OX=3702 GN=UBP6 ...	[more]
sp\|Q84WC6\|UBP7_ARATH	1.2e-13	67.35	Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana OX=3702 GN=UBP7 ...	[more]
sp\|Q0IIF7\|UBP14_BOVIN	1.7e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus OX=9913 GN=USP14 PE=2 SV=...	[more]
sp\|P54578\|UBP14_HUMAN	1.7e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens OX=9606 GN=USP14 PE=1 S...	[more]
sp\|Q9JMA1\|UBP14_MOUSE	1.7e-09	59.18	Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus OX=10090 GN=Usp14 PE=1 ...	[more]

BLAST of MELO3C019176.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIC3\|A0A1S3CIC3_CUCME	1.1e-16	89.80	ubiquitin carboxyl-terminal hydrolase 6 OS=Cucumis melo OX=3656 GN=LOC103500742 ...	[more]
tr\|A0A0A0K9N4\|A0A0A0K9N4_CUCSA	1.1e-16	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451940 PE=3 SV=1	[more]
tr\|A0A072TN68\|A0A072TN68_MEDTR	2.9e-14	80.00	Ubiquitin carboxyl-terminal hydrolase OS=Medicago truncatula OX=3880 GN=25500399...	[more]
tr\|A0A1S2YUY9\|A0A1S2YUY9_CICAR	3.8e-14	81.63	ubiquitin carboxyl-terminal hydrolase 6-like OS=Cicer arietinum OX=3827 GN=LOC10...	[more]
tr\|A0A2I0LFJ5\|A0A2I0LFJ5_PUNGR	5.0e-14	81.63	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000149 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019176.2.1	MELO3C019176.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..52 e-value: 1.6E-14 score: 55.6
None	No IPR available	PANTHER	PTHR43982	FAMILY NOT NAMED	coord: 1..50
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 2..50

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019176.2	Watermelon (97103) v2	medwmbB541
MELO3C019176.2	Cucumber (Gy14) v2	cgybmedB286
MELO3C019176.2	Cucumber (Gy14) v1	cgymedB445
MELO3C019176.2	Cucurbita maxima (Rimu)	cmamedB911
MELO3C019176.2	Cucurbita moschata (Rifu)	cmomedB899
MELO3C019176.2	Cucurbita pepo (Zucchini)	cpemedB536
MELO3C019176.2	Wild cucumber (PI 183967)	cpimedB323
MELO3C019176.2	Cucumber (Chinese Long) v2	cumedB320
MELO3C019176.2	Watermelon (Charleston Gray)	medwcgB535
MELO3C019176.2	Cucumber (Chinese Long) v3	cucmedB330