MELO3C019174 (gene) Melon (DHL92) v3.5.1

NameMELO3C019174
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNon-structural polyprotein 1A
Locationchr8 : 13761508 .. 13762242 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATAAAAAGGGAAAAGAAAGAGAAAGAAAGGAAGAAAAAGGAAGAGGTAAGAAGAGAGAAAGAAGAAGAAGAAGAAAATAAGGAGGATGAAGAATAGTAAGGCAAGGAGGAAGCCAGGGAACTAGGAGAACAAGATGAAGGGACTCCCTCCTTGCTAATTTCTCCTATAGAATTTGAGAGGACTGCAAAGAAAGCCCAAGAGAAATAAGAGAAAGTCAAATTTGGGCTATTGAAAATCAAATTAAAGGTGCAAAGCGTTAAAGCCCTGGTGGAAGAATGGAGAGAGATAAAATTGAGGAAGCAGGAAGAGTTCCTTAATAAATTTGAGAAGGTTGCCCTCTCCTTGAAGAAGGGTAAGGCAGGAAAAACCAACGAAGAATATCGCGAGGAATTAGAAAAAGAGCTAGATGAAGAAAGTCCACTTGAAGAGGAAGTGGTGACACCTTCAAAGAAAAGGAAGGTCATAATGAAAAAGGAGGTTTTAGGGGAACAATTCGCTAAAAAGTGTGAAGAAAAAGGAACCAAGAAAAGTTTGATTGGCGAAATGGACCTAAATGTAGATGAGGATGTGGGATTAGGCGATGAGAATGTGATCCTCTCCATCAAGCATATAAACATAAACTTTAAAATCGAGAAGGGACTCTTGCCCTTTAAAGGTGGATTACTAAGTTTCTTGAGGGACCAAATTCGTGCATTCAAAAGGGAAAAAGTGTTTCGAAGGAGTATTTGA

mRNA sequence

ATGCATATAAAAAGGGAAAAGAAAGAGAAAGAAAGGAAGAAAAAGGAAGAGGTGCAAAGCGTTAAAGCCCTGGTGGAAGAATGGAGAGAGATAAAATTGAGGAAGCAGGAAGAGTTCCTTAATAAATTTGAGAAGGTTGCCCTCTCCTTGAAGAAGGGTAAGGCAGGAAAAACCAACGAAGAATATCGCGAGGAATTAGAAAAAGAGCTAGATGAAGAAAGTCCACTTGAAGAGGAAGTGGTGACACCTTCAAAGAAAAGGAAGGTCATAATGAAAAAGGAGGTTTTAGGGGAACAATTCGCTAAAAAGTGTGAAGAAAAAGGAACCAAGAAAAGTTTGATTGGCGAAATGGACCTAAATGTAGATGAGGATGTGGGATTAGGCGATGAGAATGTGATCCTCTCCATCAAGCATATAAACATAAACTTTAAAATCGAGAAGGGACTCTTGCCCTTTAAAGGTGGATTACTAAGTTTCTTGAGGGACCAAATTCGTGCATTCAAAAGGGAAAAAGTGTTTCGAAGGAGTATTTGA

Coding sequence (CDS)

ATGCATATAAAAAGGGAAAAGAAAGAGAAAGAAAGGAAGAAAAAGGAAGAGGTGCAAAGCGTTAAAGCCCTGGTGGAAGAATGGAGAGAGATAAAATTGAGGAAGCAGGAAGAGTTCCTTAATAAATTTGAGAAGGTTGCCCTCTCCTTGAAGAAGGGTAAGGCAGGAAAAACCAACGAAGAATATCGCGAGGAATTAGAAAAAGAGCTAGATGAAGAAAGTCCACTTGAAGAGGAAGTGGTGACACCTTCAAAGAAAAGGAAGGTCATAATGAAAAAGGAGGTTTTAGGGGAACAATTCGCTAAAAAGTGTGAAGAAAAAGGAACCAAGAAAAGTTTGATTGGCGAAATGGACCTAAATGTAGATGAGGATGTGGGATTAGGCGATGAGAATGTGATCCTCTCCATCAAGCATATAAACATAAACTTTAAAATCGAGAAGGGACTCTTGCCCTTTAAAGGTGGATTACTAAGTTTCTTGAGGGACCAAATTCGTGCATTCAAAAGGGAAAAAGTGTTTCGAAGGAGTATTTGA

Protein sequence

MHIKREKKEKERKKKEEVQSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKTNEEYREELEKELDEESPLEEEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKKSLIGEMDLNVDEDVGLGDENVILSIKHININFKIEKGLLPFKGGLLSFLRDQIRAFKREKVFRRSI*
BLAST of MELO3C019174 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1

Query: 19  QSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKT-NEEYREELEKELDEESPLE 78
           Q  KAL+++ +++KLR+Q+E LNK ++  +S KKGK  KT +EE  EE E++L++ SPLE
Sbjct: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62

Query: 79  EEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKK 112
           +EVV P KK KV +KK VL +QF K+ EEK  KK
Sbjct: 63  DEVVKPLKK-KVTVKKSVLKKQFDKRREEKEKKK 95

BLAST of MELO3C019174 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 51/169 (30.18%), Postives = 88/169 (52.07%), Query Frame = 1

Query: 6   EKKEKERKKKEEVQSVKALVEEWREIKLRKQEEFLNKFEK-VALSLKKGKAGKTNEEYRE 65
           E+++K R++++   +++ L + ++  +      FLN   + +AL  ++ K  +  E+  E
Sbjct: 9   EERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ--E 68

Query: 66  ELEKELDEESPLEEEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKKSLIGEMDLNVDED 125
           EL  ++D+ +     +     K K    +E+        CEE   K   +  ++  V+ED
Sbjct: 69  ELLNKVDKVT-----LFVKKGKAKRTQSEEI--------CEELEKKLEDLSPVEDEVEED 128

Query: 126 VGLGDENVILSIKHININFKIEKGLLPFKGGLLSFLRDQIRAFKREKVF 174
           + LGDEN  L I++++ NFKIE G  PFK  L + LR  IRAFK E  F
Sbjct: 129 LRLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFF 162

BLAST of MELO3C019174 vs. TrEMBL
Match: A0A0A0KN01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1

Query: 29 REIKLRKQEEFLNKFEKVALSLKKGKAGKTNEEYREELEKELDEESPLEEEVVTPSKKRK 88
          RE   R++EE LNK +K+ALS+++ K  KT  E  +ELEKEL++E+ L EEV+ PS+KRK
Sbjct: 2  REKGNREREELLNKVKKIALSVERDKTKKTPSELCDELEKELEDENSL-EEVIKPSRKRK 61

Query: 89 VIMKK 94
          V MKK
Sbjct: 62 VTMKK 65

BLAST of MELO3C019174 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1

Query: 5   REKKEKER----KKKEEVQSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGK-AGKTN 64
           +EK EK R    K K + Q   AL E  +EIKLR+ EE LNK +K+ALS++KGK   KT 
Sbjct: 14  QEKTEKVRARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTF 73

Query: 65  EEYREELEKELDEESPLEEEVV-TPSKKRKVIMKKEVLGEQFAKKCEEKGTKKSLIGEMD 124
           EE+ +E EKE+DE SPLE+ VV  P+KKR V MKK+VL +QFAK+ +EK  +        
Sbjct: 74  EEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMKKKVLRDQFAKRRKEKKRRGP-----Q 133

Query: 125 LNVDEDVGLGDENVILSIKHININFKIEKGLLPFKGGLLSFLRDQIRAFK 169
              +++V   ++   LS +H++I F  EKGL P+K  +  FL   IR F+
Sbjct: 134 KESEKEVERSEKEGSLSERHVSILFMREKGLYPYKRNMSQFLEAPIRVFR 178

BLAST of MELO3C019174 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1

Query: 19  QSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKT-NEEYREELEKELDEESPLE 78
           Q  KAL+++ +++KLR+Q+E LNK ++  +S KKGK  KT +EE  EE E++L++ SPLE
Sbjct: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62

Query: 79  EEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKK 112
           +EVV P KK KV +KK VL +QF K+ EEK  KK
Sbjct: 63  DEVVKPLKK-KVTVKKSVLKKQFDKRREEKEKKK 95

BLAST of MELO3C019174 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-14
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 1

Query: 13  KKKEEVQSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKTNEEYREELEKELDE 72
           K K + Q +KAL EE +EIKLR++EE LNK +KVALS++K K  KT EE+ EE +KE++E
Sbjct: 46  KIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTFEEHCEEFKKEIEE 105

Query: 73  ESPLEEEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKKS 113
            SPLE+EVV  S K+K IM+ +        K +EK  KK+
Sbjct: 106 LSPLEDEVVEKSSKKKRIMEGQ------DDKRKEKKEKKA 139

BLAST of MELO3C019174 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 8.7e-13
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 1

Query: 7   KKEKERKKKEEVQSVKALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKTN-EEYREE 66
           K+E E+K +E   +++   E+ +E KLR++EE L K + VALS +K K  + N E + EE
Sbjct: 73  KREDEQKVQERCMALRPWREK-KETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEE 132

Query: 67  LEKELDEESPLEEEVVTPSKKRKVIMKKEVLGEQFAKKCEEKGTKK 112
            EKE+D+  PLEE+V+ P+KKR   MKK+ L +QFAK+  E+  +K
Sbjct: 133 FEKEIDKLCPLEEKVIRPAKKRTFTMKKKALRKQFAKRRVEEMKRK 177

BLAST of MELO3C019174 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 4.8e-11
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1

Query: 22  KALVEEWREIKLRKQEEFLNKFEKVALSLKKGKAGKTNEEYREELEKELDEESPL-EEEV 81
           KAL +E +E KLR+QEE LNK EKVALS +KGK  KT EEY +E E+E++E SP  +EEV
Sbjct: 53  KALADEKKETKLREQEELLNKVEKVALSTEKGKTKKTTEEYCKEFEREVEELSPFKDEEV 112

Query: 82  VTPSKKRK 89
           V P K +K
Sbjct: 113 VKPPKIKK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K7W9_CUCSA1.1e-1452.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
A0A0A0L7S0_CUCSA1.5e-0830.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1[more]
A0A0A0KN01_CUCSA2.6e-0855.38Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659083323|ref|XP_008442290.1|3.8e-2445.29PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|700189199|gb|KGN44432.1|1.6e-1452.13hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659130998|ref|XP_008465464.1|4.6e-1451.00PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|659090014|ref|XP_008445787.1|8.7e-1344.34PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
gi|659109371|ref|XP_008454680.1|4.8e-1160.29PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019174T1MELO3C019174T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 52..79
score: -coord: 7..27
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None