MELO3C019158 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019158
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein RecA
Location	chr8 : 13334735 .. 13335034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCGTTAAAATTCTTATTGGTAATCCAAAAGAAGGCATCTAACCAAAATGATGATTTTGAAAAGGACCTCATGTTCGTCGACGCAGTCATAAATTCCAAAACAGTAAAGAGCATCATGGTAGACTCAGATGCAACTCACAACTTCATTTCTGAACAAGAAGCACGTCGGTTAGAATTGAAAATTGAGAAGGCTACAGATAAGATCAAAGTTGAGAACTTCGAAGCCTTGTTAATTGTTGAGGTATTAAAAAGGGTATCCCTAAAATTAGGCGAATGGAAAGGAGATGTTGACTAA

mRNA sequence

ATGGGTGCGTTAAAATTCTTATTGGTAATCCAAAAGAAGGCATCTAACCAAAATGATGATTTTGAAAAGGACCTCATGTTCGTCGACGCAGTCATAAATTCCAAAACAGTAAAGAGCATCATGGTAGACTCAGATGCAACTCACAACTTCATTTCTGAACAAGAAGCACGTCGGTTAGAATTGAAAATTGAGAAGGCTACAGATAAGATCAAAGTTGAGAACTTCGAAGCCTTGTTAATTGTTGAGGTATTAAAAAGGGTATCCCTAAAATTAGGCGAATGGAAAGGAGATGTTGACTAA

Coding sequence (CDS)

ATGGGTGCGTTAAAATTCTTATTGGTAATCCAAAAGAAGGCATCTAACCAAAATGATGATTTTGAAAAGGACCTCATGTTCGTCGACGCAGTCATAAATTCCAAAACAGTAAAGAGCATCATGGTAGACTCAGATGCAACTCACAACTTCATTTCTGAACAAGAAGCACGTCGGTTAGAATTGAAAATTGAGAAGGCTACAGATAAGATCAAAGTTGAGAACTTCGAAGCCTTGTTAATTGTTGAGGTATTAAAAAGGGTATCCCTAAAATTAGGCGAATGGAAAGGAGATGTTGACTAA

Protein sequence

MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLELKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD*

Homology

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BLAST of MELO3C019158 vs. TrEMBL
Match: A5BE94_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033320 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.0e-10
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 4   LKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLELKI 63
           L+FL VI     N     +K LM V AV+N   VK++M DS ATHNF++ ++A RL LK+
Sbjct: 307 LQFLNVI-----NGETPVQKSLMHVHAVVNGVQVKALM-DSGATHNFVATRKATRLGLKL 366

Query: 64  EKATDKIKVENFEALLIVEVLKRVSLKLGEWKG 97
           E+ T +IK  N +A  I  V K V +++G+WKG
Sbjct: 367 EEDTSRIKAINSKAQKIQGVAKNVPMQIGDWKG 393

[Close]

BLAST of MELO3C019158 vs. TrEMBL
Match: A5AXU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 22  EKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLELKIEKATDKIKVENFEALLIV 81
           +K LM + A++N   VK++ VDS ATHNF++ +EA RL L++E+ T +IK  N +A  I 
Sbjct: 386 QKSLMHIHAIVNGVKVKAL-VDSGATHNFVATKEAARLGLRLEEDTSRIKAVNSKAQKIQ 445

Query: 82  EVLKRVSLKLGEWKGDVD 100
            V K V +K+G+W+G  D
Sbjct: 446 GVAKNVPMKIGDWEGQKD 462

[Close]

BLAST of MELO3C019158 vs. TrEMBL
Match: M5WPC2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025884mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           MGAL+FL  ++K+ +      EK LMFV   IN K  K++M  + ATHNFIS+ EA+ L 
Sbjct: 137 MGALRFLGAMEKQINKLMKSPEKGLMFVKGSINGKVAKNVMSHTSATHNFISKDEAKILG 196

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLG 93
           LK++K   ++K  N E L    V   V +K G
Sbjct: 197 LKLQKDVGRMKAVNSEVLPKTRVANLVQVKTG 228

[Close]

BLAST of MELO3C019158 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +G+L+ L  ++ K   +     K LM+V+ ++N K  K++ VD+ ATHNF+SE EA+RLE
Sbjct: 253 VGSLQLLNALKAKPMPKTPQ-NKGLMYVETLVNGKATKAL-VDTGATHNFVSEDEAKRLE 312

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L+  K    +K  N  A     V +RV++ +G WKG VD
Sbjct: 313 LQASKEGGWLKAVNSAAKPSHGVARRVTMHIGSWKGRVD 349

[Close]

BLAST of MELO3C019158 vs. TrEMBL
Match: W1NFZ5_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s00011p00232500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 23  KDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLELKIEKATDKIKVENFEALLIVE 82
           K+LM+VD  +N ++    MVD+ ATHNFIS  EA+RL L +EK + ++K  N EA  ++ 
Sbjct: 31  KELMYVDIQLNGRSTMP-MVDTGATHNFISGDEAKRLGLHLEKDSSRLKAVNSEAKPLLG 90

Query: 83  VLKRVSLKLGEWKGDVD 100
           V K V LKLG W G V+
Sbjct: 91  VAKAVELKLGGWSGTVN 106

[Close]

BLAST of MELO3C019158 vs. NCBI nr
Match: gi|1009161831|ref|XP_015899105.1| (PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +GAL+FL  +  +        EK LMFVDA IN K  KS+MVD+ ATHNF SE EARRL 
Sbjct: 232 VGALRFLNALNGQVVQARKTNEKGLMFVDATINGKAAKSVMVDTGATHNFCSESEARRLG 291

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L+++K   ++K  N +AL  V + K+V LKLG W+  VD
Sbjct: 292 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVD 330

[Close]

BLAST of MELO3C019158 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +GAL+FL  +  +        EK LMFVDA IN K  KS+MVD+ ATHNF SE EARRL 
Sbjct: 590 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSEIEARRLG 649

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L+++K   ++K  N +AL  V + K+V LKLG W+  VD
Sbjct: 650 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVD 688

[Close]

BLAST of MELO3C019158 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-16
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +GAL+FL  +  +        EK LMFVDA IN K  KS+MVD+ ATHNF SE EARRL 
Sbjct: 303 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSEIEARRLG 362

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L+++K   ++K  N +AL  V + K+V LKLG W+  VD
Sbjct: 363 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVD 401

[Close]

BLAST of MELO3C019158 vs. NCBI nr
Match: gi|1009180560|ref|XP_015871689.1| (PREDICTED: uncharacterized protein LOC107408784 [Ziziphus jujuba])

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +GAL+FL  +  +        EK LMFVDA IN K  KS+MVD+ ATHNF SE EARRL 
Sbjct: 256 VGALRFLNALNGQVVQARKTNEKGLMFVDAAINGKAAKSVMVDTGATHNFCSETEARRLG 315

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L ++K   ++K  N +AL  V + K+V LKLG W+  VD
Sbjct: 316 LCLQKDAGQMKAINSKALPTVGLAKQVPLKLGTWEDRVD 354

[Close]

BLAST of MELO3C019158 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 1   MGALKFLLVIQKKASNQNDDFEKDLMFVDAVINSKTVKSIMVDSDATHNFISEQEARRLE 60
           +GAL+FL  +  +        EK LM +DA IN K  KS+MVD+ ATHNF SE E  RL 
Sbjct: 408 VGALRFLNALNGQVVQARKTNEKGLMLMDAAINGKAAKSVMVDTGATHNFCSEIEIERLG 467

Query: 61  LKIEKATDKIKVENFEALLIVEVLKRVSLKLGEWKGDVD 100
           L+++K   ++K  N +AL  V + K+V LKLG W+  VD
Sbjct: 468 LRLQKDAGQMKAVNSKALPTVGLAKQVPLKLGTWEDRVD 506

The following BLAST results are available for this feature:

BLAST of MELO3C019158 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BE94_VITVI	6.0e-10	45.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033320 PE=4 SV=1	[more]
A5AXU3_VITVI	1.0e-09	44.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031913 PE=4 SV=1	[more]
M5WPC2_PRUPE	1.3e-09	42.39	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025884mg PE=4 S...	[more]
A5AYX1_VITVI	1.7e-09	39.39	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1	[more]
W1NFZ5_AMBTC	1.7e-09	48.05	Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s00011p002325...	[more]

BLAST of MELO3C019158 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009161831\|ref\|XP_015899105.1\|	3.6e-16	49.49	PREDICTED: uncharacterized protein LOC107432471 [Ziziphus jujuba]	[more]
gi\|1009175511\|ref\|XP_015868924.1\|	8.0e-16	49.49	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009181571\|ref\|XP_015872243.1\|	8.0e-16	49.49	PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba]	[more]
gi\|1009180560\|ref\|XP_015871689.1\|	2.3e-15	49.49	PREDICTED: uncharacterized protein LOC107408784 [Ziziphus jujuba]	[more]
gi\|1009165187\|ref\|XP_015900908.1\|	1.3e-13	45.45	PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019158T1	MELO3C019158T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 49..76 scor
None	No IPR available	PFAM	PF13650	Asp_protease_2	coord: 28..94 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019158	Cucurbita maxima (Rimu)	cmameB612
MELO3C019158	Cucurbita maxima (Rimu)	cmameB802
MELO3C019158	Cucurbita moschata (Rifu)	cmomeB602
MELO3C019158	Cucurbita moschata (Rifu)	cmomeB786
MELO3C019158	Wild cucumber (PI 183967)	cpimeB331
MELO3C019158	Cucumber (Chinese Long) v2	cumeB272
MELO3C019158	Watermelon (Charleston Gray)	mewcgB527
MELO3C019158	Watermelon (97103) v1	mewmB577
MELO3C019158	Cucurbita pepo (Zucchini)	cpemeB073
MELO3C019158	Cucurbita pepo (Zucchini)	cpemeB461
MELO3C019158	Bottle gourd (USVL1VR-Ls)	lsimeB158
MELO3C019158	Cucumber (Gy14) v2	cgybmeB286
MELO3C019158	Silver-seed gourd	carmeB0585
MELO3C019158	Silver-seed gourd	carmeB0999
MELO3C019158	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019158	Watermelon (97103) v2	mewmbB535
MELO3C019158	Wax gourd	mewgoB641