MELO3C019150 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019150
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAcetylornithine aminotransferase
Locationchr8 : 13137711 .. 13138257 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAGCATGCCCTGATTACGCCCACAAAACGATACAGACATTATCAAGCAAGCCCATCCAGTATATCAACTCAACATCCCGATTTCACTCCCCGTCCGACGTAGAGACCCGACATTTCATTAATTTCGACCAAACCCAAACCAAGCAAGAAGCAATTGCAAAATCTCTTGTATCGCCACAGACAAGCACACTGAGAATACGCCCACAACGAGGTTCAAGCATTATCCAAGCAAGCCCATCCGAGTACATCAACTCGACATCCCACTCTGCCTCTCCGTCCGATGTAAAGGCTCGACATTTCGTCAATTCCAACCAAACTCTTCCACCAAGCAAGAAGCAATCGCAATACATATTGTATCGCCACAGACAAGCACGCCGAGAATTCACCCACAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCAAGTACATCAACTCGACATCCTGCTCTCACTCCCCACCCGATGTACAGGCCCATCGTTTTAGCCAAACACCTCCCCCGAGCACGAAGTAATTTCCAGTCGTCACGTATCACCACGGACTAG

mRNA sequence

ACAAGCATGCCCTGATTACGCCCACAAAACGATACAGACATTATCAAGCAAGCCCATCCAGTATATCAACTCAACATCCCGATTTCACTCCCCGTCCGACGTAGAGACCCGACATTTCATTAATTTCGACCAAACCCAAACCAAGCAAGAAGCAATTGCAAAATCTCTTGTATCGCCACAGACAAGCACACTGAGAATACGCCCACAACGAGGTTCAAGCATTATCCAAGCAAGCCCATCCGAGTACATCAACTCGACATCCCACTCTGCCTCTCCGTCCGATGTAAAGGCTCGACATTTCGTCAATTCCAACCAAACTCTTCCACCAAGCAAGAAGCAATCGCAATACATATTGTATCGCCACAGACAAGCACGCCGAGAATTCACCCACAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCAAGTACATCAACTCGACATCCTGCTCTCACTCCCCACCCGATGTACAGGCCCATCGTTTTAGCCAAACACCTCCCCCGAGCACGAAGTAATTTCCAGTCGTCACGTATCACCACGGACTAG

Coding sequence (CDS)

ACAAGCATGCCCTGATTACGCCCACAAAACGATACAGACATTATCAAGCAAGCCCATCCAGTATATCAACTCAACATCCCGATTTCACTCCCCGTCCGACGTAGAGACCCGACATTTCATTAATTTCGACCAAACCCAAACCAAGCAAGAAGCAATTGCAAAATCTCTTGTATCGCCACAGACAAGCACACTGAGAATACGCCCACAACGAGGTTCAAGCATTATCCAAGCAAGCCCATCCGAGTACATCAACTCGACATCCCACTCTGCCTCTCCGTCCGATGTAAAGGCTCGACATTTCGTCAATTCCAACCAAACTCTTCCACCAAGCAAGAAGCAATCGCAATACATATTGTATCGCCACAGACAAGCACGCCGAGAATTCACCCACAACGAGGTGCAAGCATTATCCAAGCAAGCCCATCCAAGTACATCAACTCGACATCCTGCTCTCACTCCCCACCCGATGTACAGGCCCATCGTTTTAGCCAAACACCTCCCCCGAGCACGAAGTAATTTCCAGTCGTCACGTATCACCACGGACTAG

Protein sequence

QACPDYAHKTIQTLSSKPIQYINSTSRFHSPSDVETRHFINFDQTQTKQEAIAKSLVSPQTSTLRIRPQRGSSIIQASPSEYINSTSHSASPSDVKARHFVNSNQTLPPSKKQSQYILYRHRQARREFTHNEVQALSKQAHPSTSTRHPALTPHPMYRPIVLAKHLPRARSNFQSSRITTD*
Homology
[Close]
BLAST of MELO3C019150 vs. NCBI nr
Match: gi|1004041347|ref|WP_061496626.1| (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 1 

Query: 1   QACPDYAHKTIQTLSSKPIQYINSTSRFHSPSDVETRHFINFDQTQTKQEAIAKSLVSPQ 60
           QA P+ AH  +Q  S +P    ++     +P               TKQEAI + LVS +
Sbjct: 54  QASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGEKPTFRPNPSTKQEAIERHLVSSR 113

Query: 61  TSTLRIRPQRGSSIIQASPSEYINSTSHSASPSDVKARH 100
           TS  +  PQ+ +SIIQASPS+ INSTS S SP DV A+H
Sbjct: 114 TSNPKRHPQQSASIIQASPSKQINSTSRSHSPPDVGAQH 152

[Close]
BLAST of MELO3C019150 vs. NCBI nr
Match: gi|1004041347|ref|WP_061496626.1| (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 29/73 (39.73%), Postives = 37/73 (50.68%), Query Frame = 1 

Query: 83  INSTSHSASPSDVKARHFVNSNQTLPPSKKQSQYILYRHRQARREFTHNEVQALSKQAHP 142
           + S++H          H    ++    +    + I Y   QA     HN+VQA SKQ HP
Sbjct: 14  VRSSTHVRLAIRQPKNHRAQRDEPFRQAGTDRKVISYPQGQASPNDAHNKVQASSKQPHP 73

Query: 143 STSTRHPALTPHP 156
           STSTR PALTPHP
Sbjct: 74  STSTRLPALTPHP 86

The following BLAST results are available for this feature:
BLAST of MELO3C019150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1004041347|ref|WP_061496626.1|1.7e-0842.42hypothetical protein [Legionella pneumophila][more]
gi|1004041347|ref|WP_061496626.1|4.4e-0439.73hypothetical protein [Legionella pneumophila][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU59850melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019150T1MELO3C019150T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59850MU59850transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019150Cucurbita maxima (Rimu)cmameB612
MELO3C019150Cucurbita maxima (Rimu)cmameB802
MELO3C019150Cucurbita moschata (Rifu)cmomeB602
MELO3C019150Cucurbita moschata (Rifu)cmomeB786
MELO3C019150Wild cucumber (PI 183967)cpimeB331
MELO3C019150Cucumber (Chinese Long) v2cumeB272
MELO3C019150Watermelon (Charleston Gray)mewcgB527
MELO3C019150Watermelon (97103) v1mewmB577
MELO3C019150Cucurbita pepo (Zucchini)cpemeB073
MELO3C019150Cucurbita pepo (Zucchini)cpemeB461
MELO3C019150Bottle gourd (USVL1VR-Ls)lsimeB158
MELO3C019150Cucumber (Gy14) v2cgybmeB286
MELO3C019150Silver-seed gourdcarmeB0585
MELO3C019150Silver-seed gourdcarmeB0945
MELO3C019150Cucumber (Chinese Long) v3cucmeB337
MELO3C019150Watermelon (97103) v2mewmbB535
MELO3C019150Wax gourdmewgoB641
MELO3C019150Cucumber (Gy14) v1cgymeB578