MELO3C019129 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019129
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDouble-stranded RNA-specific editase B2
Locationchr8 : 12797844 .. 12798362 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTTGATCTTGAGGTGCATCTTGTTAATCCTGATATGTCTGGCGAGTTCTCTATTTCCTTTGATGAAGACCACATTGCTAGTCTTGTTTGATGTCCATGATAGGCTCTTGTTGTATCTCCTTGCTACCTTCCTTCTCATTCTTCTCATCCTAGAGAGAAAGTTTTTACTGCCCCTATTGGAGTTTATGCTCCAAATGTTGATGCCTTTGTTCCCTCTAGAAAATCTAATTATATAGAAAATGTCTTTGCTCCTTTTGTTGTCTTTGCTCCTTTTGTTGATGACTCTACCCCTAGCGATACTATTGATACCACTGCTCCTCGCCTTCTTGACTCTACGCCTGTTGATAATTCGACACCCCCTAGTTCATATGCTCATGCAAAGGGCGCCCCAACTTCAACAAAAAGGGTGTCTCCTCTAGTTGGTTCTTCCGTGCCTCTTCCTTATAAGCCTCCACAACGTCCCTCTTTCAAGGGACAAAAGGTTATCACTACTAAGGCCAGACAAAGAAAGTAG

mRNA sequence

ATGTATTTTGATCTTGAGGCTCTTGTTGTATCTCCTTGCTACCTTCCTTCTCATTCTTCTCATCCTAGAGAGAAAGTTTTTACTGCCCCTATTGGAGTTTATGCTCCAAATGTTGATGCCTTTGTTCCCTCTAGAAAATCTAATTATATAGAAAATGTCTTTGCTCCTTTTGTTGTCTTTGCTCCTTTTGTTGATGACTCTACCCCTAGCGATACTATTGATACCACTGCTCCTCGCCTTCTTGACTCTACGCCTGTTGATAATTCGACACCCCCTAGTTCATATGCTCATGCAAAGGGCGCCCCAACTTCAACAAAAAGGGTGTCTCCTCTAGTTGGTTCTTCCGTGCCTCTTCCTTATAAGCCTCCACAACGTCCCTCTTTCAAGGGACAAAAGGTTATCACTACTAAGGCCAGACAAAGAAAGTAG

Coding sequence (CDS)

ATGTATTTTGATCTTGAGGCTCTTGTTGTATCTCCTTGCTACCTTCCTTCTCATTCTTCTCATCCTAGAGAGAAAGTTTTTACTGCCCCTATTGGAGTTTATGCTCCAAATGTTGATGCCTTTGTTCCCTCTAGAAAATCTAATTATATAGAAAATGTCTTTGCTCCTTTTGTTGTCTTTGCTCCTTTTGTTGATGACTCTACCCCTAGCGATACTATTGATACCACTGCTCCTCGCCTTCTTGACTCTACGCCTGTTGATAATTCGACACCCCCTAGTTCATATGCTCATGCAAAGGGCGCCCCAACTTCAACAAAAAGGGTGTCTCCTCTAGTTGGTTCTTCCGTGCCTCTTCCTTATAAGCCTCCACAACGTCCCTCTTTCAAGGGACAAAAGGTTATCACTACTAAGGCCAGACAAAGAAAGTAG

Protein sequence

MYFDLEALVVSPCYLPSHSSHPREKVFTAPIGVYAPNVDAFVPSRKSNYIENVFAPFVVFAPFVDDSTPSDTIDTTAPRLLDSTPVDNSTPPSSYAHAKGAPTSTKRVSPLVGSSVPLPYKPPQRPSFKGQKVITTKARQRK*
Homology
[Close]
BLAST of MELO3C019129 vs. TrEMBL
Match: E5GBZ9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-08
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 40  AFVPSRKSNYIENVFAPFVVFAPFVDDSTPSDTIDTTAPRLLDSTPVDNST-----PPSS 99
           A +PS  +  ++ + AP    A  VDD+T S+ +D+ AP +LDS  V +S      P S 
Sbjct: 16  ALIPSASTLNVDTL-APSSEVALSVDDATSSNDVDSDAPSILDSMLVGHSPSVDDFPSSL 75

Query: 100 YAHAKGAPTSTKRVSPLVGSSVPLPYKPPQRPSFKGQKVITTKARQRK 143
              A+ AP+ST  V P + SSV  P K   RP FK QKVITTK   RK
Sbjct: 76  SIVAEDAPSSTAGVFPSMNSSVLAPPKLHWRPPFKEQKVITTKVYHRK 122

[Close]
BLAST of MELO3C019129 vs. NCBI nr
Match: gi|307136155|gb|ADN33998.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 40  AFVPSRKSNYIENVFAPFVVFAPFVDDSTPSDTIDTTAPRLLDSTPVDNST-----PPSS 99
           A +PS  +  ++ + AP    A  VDD+T S+ +D+ AP +LDS  V +S      P S 
Sbjct: 16  ALIPSASTLNVDTL-APSSEVALSVDDATSSNDVDSDAPSILDSMLVGHSPSVDDFPSSL 75

Query: 100 YAHAKGAPTSTKRVSPLVGSSVPLPYKPPQRPSFKGQKVITTKARQRK 143
              A+ AP+ST  V P + SSV  P K   RP FK QKVITTK   RK
Sbjct: 76  SIVAEDAPSSTAGVFPSMNSSVLAPPKLHWRPPFKEQKVITTKVYHRK 122

The following BLAST results are available for this feature:
BLAST of MELO3C019129 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBZ9_CUCME3.6e-0842.59Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C019129 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136155|gb|ADN33998.1|5.2e-0842.59hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019129T1MELO3C019129T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019129Silver-seed gourdcarmeB0585
MELO3C019129Cucumber (Chinese Long) v3cucmeB337
MELO3C019129Watermelon (97103) v2mewmbB535
MELO3C019129Wax gourdmewgoB641
MELO3C019129Cucumber (Gy14) v1cgymeB578
MELO3C019129Cucurbita maxima (Rimu)cmameB612
MELO3C019129Cucurbita maxima (Rimu)cmameB802
MELO3C019129Cucurbita moschata (Rifu)cmomeB786
MELO3C019129Wild cucumber (PI 183967)cpimeB331
MELO3C019129Cucumber (Chinese Long) v2cumeB272
MELO3C019129Watermelon (Charleston Gray)mewcgB527
MELO3C019129Watermelon (97103) v1mewmB577
MELO3C019129Cucurbita pepo (Zucchini)cpemeB461
MELO3C019129Bottle gourd (USVL1VR-Ls)lsimeB158
MELO3C019129Cucumber (Gy14) v2cgybmeB286