MELO3C019119 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019119
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein
Location	chr8 : 12502970 .. 12503137 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGTGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGTAATGCTTAG

mRNA sequence

ATGACATATTGTGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGTAATGCTTAG

Coding sequence (CDS)

ATGACATATTGTGACGACGTTGACGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAATGGCACGACGACCTAGCCGAATCGATGTTCACCGAATGGCAGTTGCGTAATGCTTAG

Protein sequence

MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA*

Homology

[Close]

BLAST of MELO3C019119 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-21
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLR 54
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQW DDLA SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C019119 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-07
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFT 49
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQW D+LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]

BLAST of MELO3C019119 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-20
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLR 54
           MTYC+DV+DEDEGDSTYATTTASEDIQYIETTNEWSQW DDLA SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C019119 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRNA 56
           MTYCDDVDD DEGD  YATTT  E+I YIE TNEWSQW D LAESMFT+WQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of MELO3C019119 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 7.9e-13
Identity = 35/54 (64.81%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRN 55
           +TY +++DDED+GDST+ATT+  +DI YIE +NEW++W D LA SMFTEWQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTSG-DDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

[Close]

BLAST of MELO3C019119 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTE 50
           MT CDD+DD DEG+S Y  T A EDI+YIETTNEWSQW+D LAE++F E
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

[Close]

BLAST of MELO3C019119 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1   MTYCDDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWHDDLAESMFTEWQLRN 55
           MT  D  D+ DE DST+ATT A++DI YIET+NEWSQW DDLAE MFT+W+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:

BLAST of MELO3C019119 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	7.2e-21	88.68	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	7.7e-07	62.50	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C019119 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	1.0e-20	88.68	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659099182\|ref\|XP_008450472.1\|	2.8e-18	80.00	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
gi\|659086609\|ref\|XP_008444024.1\|	7.9e-13	64.81	PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo]	[more]
gi\|659126170\|ref\|XP_008463047.1\|	3.0e-12	69.39	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|659121362\|ref\|XP_008460622.1\|	6.7e-12	68.52	PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019119T1	MELO3C019119T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 53..55 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019119	Silver-seed gourd	carmeB0585
MELO3C019119	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019119	Watermelon (97103) v2	mewmbB535
MELO3C019119	Wax gourd	mewgoB641
MELO3C019119	Cucumber (Gy14) v1	cgymeB578
MELO3C019119	Cucurbita maxima (Rimu)	cmameB612
MELO3C019119	Cucurbita maxima (Rimu)	cmameB802
MELO3C019119	Cucurbita moschata (Rifu)	cmomeB786
MELO3C019119	Wild cucumber (PI 183967)	cpimeB331
MELO3C019119	Cucumber (Chinese Long) v2	cumeB272
MELO3C019119	Watermelon (Charleston Gray)	mewcgB527
MELO3C019119	Watermelon (97103) v1	mewmB577
MELO3C019119	Cucurbita pepo (Zucchini)	cpemeB461
MELO3C019119	Bottle gourd (USVL1VR-Ls)	lsimeB158
MELO3C019119	Cucumber (Gy14) v2	cgybmeB286