MELO3C019088 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019088
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr8 : 11607589 .. 11608171 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGGTTGGAACGATGTATACCAGTGCATACGCAAGGTATTCGACAGCTGGGTGAAGGTATGTATCTCATGATGAACGTTTTACGTCTAGAATCCTAATCAACGACTAATATATTGAAATGTTTCTACAGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG

mRNA sequence

TACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG

Coding sequence (CDS)

TACGACAAGTTCTTCAAGAGCACCTAAACACATTTGGACCAATAAGGAAGAAGCCAAACTTGTTGAGTGTTTGGTGAAGTTAGTCTCCTCTAATGGATGGAGATCCGATAACGGTACCTTCAGACTTGGGTACCTCGCACAAGTGCAACGGATGATGGCAGAGAAGCTCTCGGGCTGTAACATCCAAGGGGTTCCAATAATACACTGTCAGATCAAAGCCCTTAAGAGAATCTATCAAGCAATAGTAGAAATACGAGGGCAACATGCAATGGATTTGAGTCATCCTGCAGCCAAGGGCCTCCTCAACAAAACATTTCCTTATTACGATGACATGACGTATGTTTTTGGGAAAGATCGGGCTATGGAAGGACGATCAGAGACCTTCGCTGGTGTAGGATCTAATGTACCTTGGGATTCAATGGTTTTCCCATTATTCGAAGATCCCGACGATGTATAG

Protein sequence

TTSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPDDV*

Homology

[Close]

BLAST of MELO3C019088 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 84/154 (54.55%), Postives = 105/154 (68.18%), Query Frame = 1


Query: 2   TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
           TSSSR PKH WT +EEA LVECLV+LV++ GWRSDNGTFR GYL Q+ RMMA K+ G NI
Sbjct: 357 TSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNI 416

Query: 62  QGVPIIHCQIKALKRIYQAIVEIRGQHAM-------------------DLSHPAAKGLLN 121
                I  +IK +KR++ A+ E+RG +                     D SHPAAKGLLN
Sbjct: 417 H-ASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLN 476

Query: 122 KTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVP 137
           K+F +YD+++YVFGKDRA  GR+E+FA +GSN P
Sbjct: 477 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDP 509

[Close]

BLAST of MELO3C019088 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 68/135 (50.37%), Postives = 82/135 (60.74%), Query Frame = 1


Query: 23  CLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGVPIIHCQIKALKRIYQAIV 82
           C ++LVS  GW+SDNGTFR GYLAQ+ RMMAEKLSGC ++   +I C+IK LKR +QAI 
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 83  EIRGQHAMDLSHPA---------------------AKGLLNKTFPYYDDMTYVFGKDRAM 137
           E+ G                               AKGLLN  FPYYD++TYVFG+DRA 
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRAT 459

[Close]

BLAST of MELO3C019088 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-19
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1


Query: 3   SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
           SSSR  KH+W  +++A LVECLVKLV+S+GW SDNGTF LGY +Q+ RMMA+K+SG NIQ
Sbjct: 3   SSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPNIQ 62

Query: 63  GVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYV 115
              I  C IK +++ + AI EIRG        P+  G     F + D++ Y+
Sbjct: 63  ATTIDSC-IKTMEKTFHAISEIRG--------PSCSG-----FSWNDELNYI 100

[Close]

BLAST of MELO3C019088 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-17
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1


Query: 12  WTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGVPIIHCQI 71
           W +KE+A LV+ L+KLV   GWR++NG  + G   +++++M E L GC ++  P I  ++
Sbjct: 23  WGSKEDATLVKSLLKLVDDGGWRAENGQLKSGAYGKLEKIMGELLPGCGMKARPHIESRV 82

Query: 72  KALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGLLNKTFPYYDD 121
           + L++ + AI E+RG +                         SHP AKGL NK+FP+YD+
Sbjct: 83  RLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEEWLKSHPNAKGLRNKSFPFYDE 142

[Close]

BLAST of MELO3C019088 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 5   SRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGV 64
           ++ PKH W+  E+  LV CLV+L+    W+++NG F  GYLAQ+++ + E++  C  +G 
Sbjct: 13  NKNPKHQWSQHEDEHLVHCLVRLIQEGSWKAENG-FCTGYLAQLEKWLHERIPTCEFKGN 72

Query: 65  PIIHCQIKALKRIYQAIVEIRGQHA---------------MDL------SHPAAKGLLNK 124
           P I  ++K LKR + AI E+    A                D+       HP+A+GL NK
Sbjct: 73  PHIDSRLKTLKRQFHAITEMLEPSAGGFGWNDKDKCIVCDKDIFDNWVKGHPSARGLSNK 132

Query: 125 TFPYYDDMTYVFGKDRAMEGRSETFAGV 132
            FPY + ++ VF KDRA    +E+ A V
Sbjct: 133 PFPYLEKLSIVFVKDRATGEAAESPADV 159

[Close]

BLAST of MELO3C019088 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 92/154 (59.74%), Postives = 104/154 (67.53%), Query Frame = 1


Query: 3   SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
           S SRAPKH WT +EE K VECLV+LVSS GWRSDNGTF+ GYLAQ+QRMMAEKL G NIQ
Sbjct: 3   SLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQ 62

Query: 63  GVPIIHCQIKALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGLL 122
               I C +K+LK+ Y AI E+RG                           SHPAAKGLL
Sbjct: 63  ESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLL 122

Query: 123 NKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNV 136
           +K+FPYYDD++YVFGKDRA   RSETF  VGSNV
Sbjct: 123 HKSFPYYDDLSYVFGKDRATGARSETFPNVGSNV 156

[Close]

BLAST of MELO3C019088 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 84/154 (54.55%), Postives = 105/154 (68.18%), Query Frame = 1


Query: 2   TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
           TSSSR PKH WT +EEA LVECLV+LV++ GWRSDNGTFR GYL Q+ RMMA K+ G NI
Sbjct: 357 TSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNI 416

Query: 62  QGVPIIHCQIKALKRIYQAIVEIRGQHAM-------------------DLSHPAAKGLLN 121
                I  +IK +KR++ A+ E+RG +                     D SHPAAKGLLN
Sbjct: 417 H-ASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLN 476

Query: 122 KTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVP 137
           K+F +YD+++YVFGKDRA  GR+E+FA +GSN P
Sbjct: 477 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDP 509

[Close]

BLAST of MELO3C019088 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 86/167 (51.50%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 2   TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
           TSSSR  KH WT +EEA LVECLV+LV++ GWRSDNGTFR  YL Q+ RMMA K+ GCNI
Sbjct: 343 TSSSRLSKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPEYLNQLARMMAFKIPGCNI 402

Query: 62  QGVPIIHCQIKALKRIYQAIVEIRGQHAM-------------------DLSHPAAKGLLN 121
                I  +IK +KR++ A+ E+RG +                     D SHP AKGLLN
Sbjct: 403 H-ASTIDSRIKLMKRMFHALAEMRGPNCNSFGWNDEKKCIVAEKEVFDDWSHPTAKGLLN 462

Query: 122 KTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVPWDSMVFPLFEDPD 150
           K+F +YD+++YVFGKDRA  GR+E+FA +GSN P     FP    PD
Sbjct: 463 KSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPD 508

[Close]

BLAST of MELO3C019088 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 82/133 (61.65%), Postives = 91/133 (68.42%), Query Frame = 1


Query: 3   SSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQ 62
           SSSRA KH WT +EEAKLVECLV+LVS+ GWRSDNGTFR GYL Q+QRMMAEKL   NIQ
Sbjct: 3   SSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQ 62

Query: 63  GVPIIHCQIKALKRIYQAIVEIRGQHAMDLSHPAAKGLLNKTFPYYDDMTYVFGKDRAME 122
           G P I C+                      SHPAAKGLL+K+FPYYDD++YVFG D A  
Sbjct: 63  GSPTIDCR----------------------SHPAAKGLLHKSFPYYDDLSYVFGNDGATG 113

Query: 123 GRSETFAGVGSNV 136
             SETFA  GSNV
Sbjct: 123 AHSETFADGGSNV 113

[Close]

BLAST of MELO3C019088 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 86/171 (50.29%), Postives = 107/171 (62.57%), Query Frame = 1


Query: 2   TSSSRAPKHIWTNKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNI 61
           TSSSR PKH WT +EEA LVECLV+LV+++GWRSDNGTF   YL Q+ RMMA K+ GCNI
Sbjct: 176 TSSSRLPKHSWTKEEEAGLVECLVELVNASGWRSDNGTFCPEYLNQLARMMAFKIPGCNI 235

Query: 62  QGVPIIHCQIKALKRIYQAIVEIRGQHAMDL---------------------SHPAAKGL 121
                I  +IK +KR++ A+ E+RG                           SHP AKGL
Sbjct: 236 H-ASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGL 295

Query: 122 LNKTFPYYDDMTYVFGKDRAMEGRSETFAGVGSNVP--WDSMVFPLFEDPD 150
           LNK+FP+YD+  YVFGKDRA  GR+++FA VGSN P  +D+ V     D D
Sbjct: 296 LNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGYDAFVADATPDTD 345

The following BLAST results are available for this feature:

BLAST of MELO3C019088 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	1.5e-36	54.55	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	1.1e-26	50.37	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBS5_CUCME	8.2e-19	49.11	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A162AHN3_DAUCA	1.2e-17	37.69	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1	[more]
A0A0A9TMG5_ARUDO	1.7e-16	35.81	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of MELO3C019088 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082641\|ref\|XP_008441954.1\|	1.7e-41	59.74	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	2.1e-36	54.55	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	2.8e-36	51.50	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]
gi\|659113923\|ref\|XP_008456820.1\|	3.1e-35	61.65	PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo]	[more]
gi\|659111306\|ref\|XP_008455685.1\|	1.2e-34	50.29	PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019088T1	MELO3C019088T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 9..131 score: 1.3
None	No IPR available	PANTHER	PTHR31704:SF16	SUBFAMILY NOT NAMED	coord: 9..131 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019088	Silver-seed gourd	carmeB0224
MELO3C019088	Silver-seed gourd	carmeB0585
MELO3C019088	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019088	Watermelon (97103) v2	mewmbB535
MELO3C019088	Wax gourd	mewgoB641
MELO3C019088	Cucumber (Gy14) v1	cgymeB068
MELO3C019088	Cucurbita maxima (Rimu)	cmameB612
MELO3C019088	Cucurbita maxima (Rimu)	cmameB802
MELO3C019088	Cucurbita moschata (Rifu)	cmomeB608
MELO3C019088	Cucurbita moschata (Rifu)	cmomeB786
MELO3C019088	Wild cucumber (PI 183967)	cpimeB331
MELO3C019088	Cucumber (Chinese Long) v2	cumeB272
MELO3C019088	Watermelon (Charleston Gray)	mewcgB527
MELO3C019088	Watermelon (97103) v1	mewmB577
MELO3C019088	Cucurbita pepo (Zucchini)	cpemeB063
MELO3C019088	Cucurbita pepo (Zucchini)	cpemeB461
MELO3C019088	Bottle gourd (USVL1VR-Ls)	lsimeB158
MELO3C019088	Cucumber (Gy14) v2	cgybmeB286