MELO3C019080 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C019080
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA primase small subunit PriS
Locationchr8 : 11392008 .. 11392262 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATGATGCCAACAATTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATACAGGGGTCAGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCACAGACATGGACGTGGTTATGGGGAACATAACAAATATCTGTATCATGAAGCACCTGCATATGTATCAGATCGACAAGAGTACCGACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

mRNA sequence

ATGACGATGATGCCAACAATTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATACAGGGGTCAGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCACAGACATGGACGTGGTTATGGGGAACATAACAAATATCTGTATCATGAAGCACCTGCATATGTATCAGATCGACAAGAGTACCGACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

Coding sequence (CDS)

ATGACGATGATGCCAACAATTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATACAGGGGTCAGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCACAGACATGGACGTGGTTATGGGGAACATAACAAATATCTGTATCATGAAGCACCTGCATATGTATCAGATCGACAAGAGTACCGACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

Protein sequence

MTMMPTIGAGYCDSEVDTGYYDTGVSPSSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYRQEPENQEDREQHRV*
Homology
[Close]
BLAST of MELO3C019080 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1 

Query: 3   MMPTIGAGYCDSEVDT------GYYDTGVSPSSS-----YMDVG--PSTSYMHRHGRGYG 62
           MMPT G  Y DS V        GYY++    SS+     Y D+G  PS+SYMH HGRG G
Sbjct: 136 MMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRG 195

Query: 63  EHNKYLYHEAPAYVSDRQEYRQEPENQEDREQ 82
           EHN+YLY++ PA V ++ + +Q+ EN    EQ
Sbjct: 196 EHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQ 227

The following BLAST results are available for this feature:
BLAST of MELO3C019080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|1.1e-1045.65PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019080T1MELO3C019080T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019080Cucurbita pepo (Zucchini)cpemeB063
MELO3C019080Cucurbita pepo (Zucchini)cpemeB461
MELO3C019080Bottle gourd (USVL1VR-Ls)lsimeB158
MELO3C019080Cucumber (Gy14) v2cgybmeB286
MELO3C019080Silver-seed gourdcarmeB0585
MELO3C019080Cucumber (Chinese Long) v3cucmeB337
MELO3C019080Wax gourdmewgoB641
MELO3C019080Cucumber (Gy14) v1cgymeB068
MELO3C019080Cucurbita maxima (Rimu)cmameB612
MELO3C019080Cucurbita maxima (Rimu)cmameB802
MELO3C019080Cucurbita moschata (Rifu)cmomeB608
MELO3C019080Cucurbita moschata (Rifu)cmomeB786
MELO3C019080Wild cucumber (PI 183967)cpimeB331
MELO3C019080Cucumber (Chinese Long) v2cumeB272