MELO3C019062 (gene) Melon (DHL92) v3.5.1

NameMELO3C019062
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLysine-specific demethylase 3B, putative isoform 4
Locationchr8 : 10865498 .. 10865782 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCATACCCTCCAGGTTTTACTCTTCAAAGGTCGTCTAGTCCATACGTGGTGGATAAGACATATCCTACATCCTTTTTCGCACAAAATCCTAACCTGACCACCCAACAGGTAGTCCATGTGAACGATCCCATATCTACCCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGACGGCTGAAATTTCTAGAAGAAAGATTGTGTGCCATTAAAGGTGCAGACACGTACATGAGTATAGACGTAGCACAACTATGTTTGATTTGA

mRNA sequence

ATGCCTGCATACCCTCCAGGTTTTACTCTTCAAAGGTCGTCTAGTCCATACGTGGTGGATAAGACATATCCTACATCCTTTTTCGCACAAAATCCTAACCTGACCACCCAACAGGTAGTCCATGTGAACGATCCCATATCTACCCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGACGGCTGAAATTTCTAGAAGAAAGATTGTGTGCCATTAAAGGTGCAGACACGTACATGAGTATAGACGTAGCACAACTATGTTTGATTTGA

Coding sequence (CDS)

ATGCCTGCATACCCTCCAGGTTTTACTCTTCAAAGGTCGTCTAGTCCATACGTGGTGGATAAGACATATCCTACATCCTTTTTCGCACAAAATCCTAACCTGACCACCCAACAGGTAGTCCATGTGAACGATCCCATATCTACCCCAATTACGGAAAGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGACGGCTGAAATTTCTAGAAGAAAGATTGTGTGCCATTAAAGGTGCAGACACGTACATGAGTATAGACGTAGCACAACTATGTTTGATTTGA

Protein sequence

MPAYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEEQGSRRRLKFLEERLCAIKGADTYMSIDVAQLCLI*
BLAST of MELO3C019062 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1

Query: 3   AYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEEQG 62
           AYPP FT QR SSP +VD+TYPTSF A NPN TTQQ  HV+D ISTPIT+SGKKISEEQG
Sbjct: 58  AYPPSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQG 117

Query: 63  SRRRLKFLEERLCAIKGADTYMSIDVAQLCLI 95
           SR+RL+FLEERLC I+G D Y SID  QLCLI
Sbjct: 118 SRKRLEFLEERLCTIEGIDMYESIDATQLCLI 149

BLAST of MELO3C019062 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 1

Query: 1   MPAYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEE 60
           M  YPPGFT Q+SSSP +VD+TYPT    QNPN TTQQ VHV+DPIST ITE GKKISEE
Sbjct: 56  MTTYPPGFTPQQSSSPRIVDRTYPT----QNPNTTTQQAVHVSDPISTLITEGGKKISEE 115

Query: 61  QGSRRRLKFLEERLCAIKGADTYMSIDVAQLCLI 95
           QGSRRR++FLEERL AI+GAD Y SID  QLCLI
Sbjct: 116 QGSRRRMEFLEERLRAIEGADMYGSIDATQLCLI 145

BLAST of MELO3C019062 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-25
Identity = 67/94 (71.28%), Postives = 74/94 (78.72%), Query Frame = 1

Query: 1   MPAYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEE 60
           MPAYPPGFT QRSSSP +   TY T    QNPN  TQQ  HV+DP+STPITESGKKI EE
Sbjct: 56  MPAYPPGFTPQRSSSPRM---TYST----QNPNPITQQENHVSDPMSTPITESGKKILEE 115

Query: 61  QGSRRRLKFLEERLCAIKGADTYMSIDVAQLCLI 95
           QGSR+RL+F+EERL AI+GAD Y SID  QLCLI
Sbjct: 116 QGSRKRLEFVEERLRAIEGADMYGSIDATQLCLI 142

BLAST of MELO3C019062 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 9.0e-25
Identity = 66/94 (70.21%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 1   MPAYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEE 60
           MPAYP GFT QRSSSP +   TYPT    QNPN  TQQ  HV+DP+STPIT+SGKKISEE
Sbjct: 56  MPAYPIGFTPQRSSSPRM---TYPT----QNPNPITQQTDHVSDPMSTPITKSGKKISEE 115

Query: 61  QGSRRRLKFLEERLCAIKGADTYMSIDVAQLCLI 95
           Q SR+RL+FLEERL  I+GAD Y SID  QLCLI
Sbjct: 116 QSSRKRLEFLEERLRVIEGADMYGSIDATQLCLI 142

BLAST of MELO3C019062 vs. NCBI nr
Match: gi|659113185|ref|XP_008456442.1| (PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 67/94 (71.28%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 1  MPAYPPGFTLQRSSSPYVVDKTYPTSFFAQNPNLTTQQVVHVNDPISTPITESGKKISEE 60
          MPAYP GFT QRSSSP +   TYPT    QNPN  +QQ  HV+DP+STPITES KKI EE
Sbjct: 1  MPAYPLGFTPQRSSSPRM---TYPT----QNPNPISQQENHVSDPMSTPITESCKKILEE 60

Query: 61 QGSRRRLKFLEERLCAIKGADTYMSIDVAQLCLI 95
          QGSR+RLKFLEERL AI+GAD Y SID  QLCLI
Sbjct: 61 QGSRKRLKFLEERLRAIEGADMYGSIDATQLCLI 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659102853|ref|XP_008452348.1|1.4e-3075.00PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
gi|659114599|ref|XP_008457136.1|1.6e-2974.47PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me... [more]
gi|659093710|ref|XP_008447676.1|2.4e-2571.28PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo][more]
gi|659130442|ref|XP_008465174.1|9.0e-2570.21PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
gi|659113185|ref|XP_008456442.1|2.0e-2471.28PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019062T1MELO3C019062T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None