MELO3C019058 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019058
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	chr8 : 10790458 .. 10790703 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGATTGTCCTCTAAGAATAAAGTTGGCCCTTCCGAAATGAAAAAGAAGGGAAAGAGGAAGGCTCTCAAGAATAGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCACTACAACTACAACGGGCATTGGTTGACAAATTTTCCGAAGTACCTTGTTGAGAAGAAAACTGAGAAGGAAGCACAAGGTAAATACGATTTACTAGCTGTTGAAACGTACTTAGAGAAACATGATACTTGA

mRNA sequence

ATGGGAGGATTGTCCTCTAAGAATAAAGTTGGCCCTTCCGAAATGAAAAAGAAGGGAAAGAGGAAGGCTCTCAAGAATAGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCACTACAACTACAACGGGCATTGGTTGACAAATTTTCCGAAGTACCTTGTTGAGAAGAAAACTGAGAAGGAAGCACAAGGTAAATACGATTTACTAGCTGTTGAAACGTACTTAGAGAAACATGATACTTGA

Coding sequence (CDS)

ATGGGAGGATTGTCCTCTAAGAATAAAGTTGGCCCTTCCGAAATGAAAAAGAAGGGAAAGAGGAAGGCTCTCAAGAATAGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCACTACAACTACAACGGGCATTGGTTGACAAATTTTCCGAAGTACCTTGTTGAGAAGAAAACTGAGAAGGAAGCACAAGGTAAATACGATTTACTAGCTGTTGAAACGTACTTAGAGAAACATGATACTTGA

Protein sequence

MGGLSSKNKVGPSEMKKKGKRKALKNSKGKKVVKGKCYHYNYNGHWLTNFPKYLVEKKTEKEAQGKYDLLAVETYLEKHDT*

Homology

[Close]

BLAST of MELO3C019058 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.4e-18
Identity = 53/81 (65.43%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 3   GLSSKNKVGPS--EMKKKGKRKALKNSKGKKVV-KGKCYHYNYNGHWLTNFPKYLVEKKT 62
           G SSKNKVGPS  +MKKKGK KA   SK KK   KGKC+H N +GHW  N PKYL EKK 
Sbjct: 217 GSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDGHWKRNCPKYLAEKKA 276

Query: 63  EKEAQGKYDLLAVETYLEKHD 81
           EK  QGKYDLL VET L + D
Sbjct: 277 EKATQGKYDLLVVETCLVECD 297

[Close]

BLAST of MELO3C019058 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-15
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 5   SSKNKVGPSE--MKKKGKRKALKNSK-GKKVVKGKCYHYNYNGHWLTNFPKYLVEKKTEK 64
           SSKNKVGP E  MKKKGK KA K  K G    KGKC+H N  GHW  N PKYL +KK EK
Sbjct: 225 SSKNKVGPDEIKMKKKGKGKAAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEK 284

Query: 65  EAQGKYDLLAVETYLEKHDT 82
              GKYDLL ++  L + D+
Sbjct: 285 ATSGKYDLLVIDVCLVECDS 304

[Close]

BLAST of MELO3C019058 vs. TrEMBL
Match: W9SUE5_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_000602 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-08
Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 3   GLSSKNKVGPSEM--KKKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKT 62
           G S KNK        +KKGK K  K +KG  +  KGKC+H N  GHW  N  KYL E K 
Sbjct: 133 GSSGKNKRNNQNQGKRKKGKNKRPKKAKGPIQKPKGKCFHCNGEGHWKRNCHKYLEELK- 192

Query: 63  EKEAQGKYDLLAVETYLEKHDT 82
           +K+ QGK DLL +ET L + DT
Sbjct: 193 KKKEQGKSDLLVLETCLVEGDT 213

[Close]

BLAST of MELO3C019058 vs. TrEMBL
Match: W9RV03_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020791 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 17  KKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKTEKEAQGKYDLLAVETY 76
           KKGK K  K +KG+ +  KGKC+H N  GHW  N  KYL E K +K+ QGK DLL++ +Y
Sbjct: 138 KKGKNKRPKKAKGRIQKPKGKCFHCNGEGHWKRNCHKYLEELK-KKKEQGKSDLLSLSSY 197

Query: 77  LEKHD 81
            E  D
Sbjct: 198 TELAD 201

[Close]

BLAST of MELO3C019058 vs. TrEMBL
Match: W9S4E7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021752 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 17  KKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKTEKEAQGKYDLLAVETY 76
           KKGK K  K +K   +  KGKC+H N  GHW  N  KYL E K +K+ QGK DLL +ET 
Sbjct: 240 KKGKNKRPKKAKSPIQKPKGKCFHCNGEGHWKRNCHKYLEELK-KKKEQGKSDLLVLETC 299

Query: 77  LEKHDT 82
           L + DT
Sbjct: 300 LVEGDT 304

[Close]

BLAST of MELO3C019058 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 97.8 bits (242), Expect = 9.2e-18
Identity = 53/81 (65.43%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 3   GLSSKNKVGPS--EMKKKGKRKALKNSKGKKVV-KGKCYHYNYNGHWLTNFPKYLVEKKT 62
           G SSKNKVGPS  +MKKKGK KA   SK KK   KGKC+H N +GHW  N PKYL EKK 
Sbjct: 217 GSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDGHWKRNCPKYLAEKKA 276

Query: 63  EKEAQGKYDLLAVETYLEKHD 81
           EK  QGKYDLL VET L + D
Sbjct: 277 EKATQGKYDLLVVETCLVECD 297

[Close]

BLAST of MELO3C019058 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-15
Identity = 46/80 (57.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 5   SSKNKVGPSE--MKKKGKRKALKNSK-GKKVVKGKCYHYNYNGHWLTNFPKYLVEKKTEK 64
           SSKNKVGP E  MKKKGK KA K  K G    KGKC+H N  GHW  N PKYL +KK EK
Sbjct: 225 SSKNKVGPDEIKMKKKGKGKAAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEK 284

Query: 65  EAQGKYDLLAVETYLEKHDT 82
              GKYDLL ++  L + D+
Sbjct: 285 ATSGKYDLLVIDVCLVECDS 304

[Close]

BLAST of MELO3C019058 vs. NCBI nr
Match: gi|703153188|ref|XP_010110616.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-08
Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 3   GLSSKNKVGPSEM--KKKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKT 62
           G S KNK        +KKGK K  K +KG  +  KGKC+H N  GHW  N  KYL E K 
Sbjct: 133 GSSGKNKRNNQNQGKRKKGKNKRPKKAKGPIQKPKGKCFHCNGEGHWKRNCHKYLEELK- 192

Query: 63  EKEAQGKYDLLAVETYLEKHDT 82
           +K+ QGK DLL +ET L + DT
Sbjct: 193 KKKEQGKSDLLVLETCLVEGDT 213

[Close]

BLAST of MELO3C019058 vs. NCBI nr
Match: gi|703138553|ref|XP_010106769.1| (hypothetical protein L484_020791 [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 9.5e-07
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 17  KKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKTEKEAQGKYDLLAVETY 76
           KKGK K  K +KG+ +  KGKC+H N  GHW  N  KYL E K +K+ QGK DLL++ +Y
Sbjct: 138 KKGKNKRPKKAKGRIQKPKGKCFHCNGEGHWKRNCHKYLEELK-KKKEQGKSDLLSLSSY 197

Query: 77  LEKHD 81
            E  D
Sbjct: 198 TELAD 201

[Close]

BLAST of MELO3C019058 vs. NCBI nr
Match: gi|703140478|ref|XP_010107230.1| (hypothetical protein L484_021752 [Morus notabilis])

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-06
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 17  KKGKRKALKNSKGK-KVVKGKCYHYNYNGHWLTNFPKYLVEKKTEKEAQGKYDLLAVETY 76
           KKGK K  K +K   +  KGKC+H N  GHW  N  KYL E K +K+ QGK DLL +ET 
Sbjct: 240 KKGKNKRPKKAKSPIQKPKGKCFHCNGEGHWKRNCHKYLEELK-KKKEQGKSDLLVLETC 299

Query: 77  LEKHDT 82
           L + DT
Sbjct: 300 LVEGDT 304

The following BLAST results are available for this feature:

BLAST of MELO3C019058 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	6.4e-18	65.43	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
A0A165U314_9ROSI	3.9e-15	57.50	Gag/pol protein OS=Momordica dioica PE=4 SV=1	[more]
W9SUE5_9ROSA	4.6e-08	48.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G...	[more]
W9RV03_9ROSA	6.6e-07	50.77	Uncharacterized protein OS=Morus notabilis GN=L484_020791 PE=4 SV=1	[more]
W9S4E7_9ROSA	1.9e-06	51.52	Uncharacterized protein OS=Morus notabilis GN=L484_021752 PE=4 SV=1	[more]

BLAST of MELO3C019058 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|299474487\|gb\|ADJ18449.1\|	9.2e-18	65.43	gag/pol protein [Bryonia dioica]	[more]
gi\|1019597807\|gb\|AMY96445.1\|	5.6e-15	57.50	gag/pol protein [Momordica dioica]	[more]
gi\|703153188\|ref\|XP_010110616.1\|	6.6e-08	48.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]	[more]
gi\|703138553\|ref\|XP_010106769.1\|	9.5e-07	50.77	hypothetical protein L484_020791 [Morus notabilis]	[more]
gi\|703140478\|ref\|XP_010107230.1\|	2.8e-06	51.52	hypothetical protein L484_021752 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019058T1	MELO3C019058T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019058	Watermelon (97103) v2	mewmbB536
MELO3C019058	Wax gourd	mewgoB641
MELO3C019058	Cucurbita maxima (Rimu)	cmameB612
MELO3C019058	Cucurbita moschata (Rifu)	cmomeB608
MELO3C019058	Wild cucumber (PI 183967)	cpimeB331
MELO3C019058	Cucumber (Chinese Long) v2	cumeB272
MELO3C019058	Watermelon (Charleston Gray)	mewcgB528
MELO3C019058	Bottle gourd (USVL1VR-Ls)	lsimeB158
MELO3C019058	Cucumber (Gy14) v2	cgybmeB286
MELO3C019058	Cucumber (Chinese Long) v3	cucmeB337