MELO3C019057 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019057
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	chr8 : 10638076 .. 10638670 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACAGATTCATCGTCTGTGAATAGACACTGTTCGAATGATGTGTTAACCCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAATATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGTAGGCGAGTTAGTAAATTAGAGGCACAAATTCGCTCAAACTTATCTACACCATTGTCTGCACACGAGAGTTGTTCAAGGCCAATAATGTTCGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGTTGGACAAACCAAAAGAGAAGGAAAAGAAAGGGAAGGAGATGATGAAGGTGAATGAACCAGAGTTGGACGTCTTGAAGGTATGTAATCCACTATTAAACTCGAATGTCTAATATTGTACTTCTTGTCTAATATTGTACGTCTTACTGAATTTGGATGTTCTTGAATTAGGAGAGGGACTTAATAAAAATGCCTACAGAAAAAGAAGTTGTATGTGAATCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAG

mRNA sequence

ATGAATACAGATTCATCGTCTGTGAATAGACACTGTTCGAATGATGTGTTAACCCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAATATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGTAGGCGAGTTAGTAAATTAGAGGCACAAATTCGCTCAAACTTATCTACACCATTGTCTGCACACGAGAGTTGTTCAAGGCCAATAATGTTCGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGTTGGACAAACCAAAAGAGAAGGAAAAGAAAGGGAAGGAGATGATGAAGGTGAATGAACCAGAGTTGGACGTCTTGAAGGAGAGGGACTTAATAAAAATGCCTACAGAAAAAGAAGTTGTATGTGAATCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAG

Coding sequence (CDS)

ATGAATACAGATTCATCGTCTGTGAATAGACACTGTTCGAATGATGTGTTAACCCAAGCATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAATATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGTAGGCGAGTTAGTAAATTAGAGGCACAAATTCGCTCAAACTTATCTACACCATTGTCTGCACACGAGAGTTGTTCAAGGCCAATAATGTTCGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGTTGGACAAACCAAAAGAGAAGGAAAAGAAAGGGAAGGAGATGATGAAGGTGAATGAACCAGAGTTGGACGTCTTGAAGGAGAGGGACTTAATAAAAATGCCTACAGAAAAAGAAGTTGTATGTGAATCGACATCAACTTTGCCATTAGCGTTGAAGTCGATTCTCAGATATGCTGAGAAG

Protein sequence

MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKISKDEANILVENEELRRRVSKLEAQIRSNLSTPLSAHESCSRPIMFEGIEEKGKRIEVESLDKPKEKEKKGKEMMKVNEPELDVLKERDLIKMPTEKEVVCESTSTLPLALKSILRYAEK

Homology

[Close]

BLAST of MELO3C019057 vs. NCBI nr
Match: gi|659109765|ref|XP_008454865.1| (PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 1  MNTDSSSVNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKISKDEANILVEN 60
          MNTDSSS+NR+ SNDVLTQALGTKEHNGRVRG+G YVTP TY+HSVKK SKDE NI++E 
Sbjct: 1  MNTDSSSMNRYYSNDVLTQALGTKEHNGRVRGIGEYVTPITYYHSVKKTSKDEVNIVLEI 60

Query: 61 EELRRRVSKLEAQ 74
          EELRRR   LEAQ
Sbjct: 61 EELRRRDELLEAQ 73

[Close]

BLAST of MELO3C019057 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 8   VNRHCSNDVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKISKDEANI---LVENEELR 67
           V++  S + L QALGT EH+GRVRGVGG+VT T YFH+ K   K   NI     ENE+L 
Sbjct: 128 VDKEPSPNDLAQALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKLREENEKLC 187

Query: 68  RRVSKLEAQIRSNLSTPLSAHESCSRPIMFEGIEEKGK 103
             V +LE+   +  STP  AH SCSRP +   I+ K K
Sbjct: 188 LGVQELESIHLTTQSTPTYAHASCSRPRLEYDIQPKEK 225

[Close]

BLAST of MELO3C019057 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 40/146 (27.40%), Postives = 73/146 (50.00%), Query Frame = 1


Query: 15  DVLTQALGTKEHNGRVRGVGGYVTPTTYFHSV----KKISKDEANILVENEELRRRVSKL 74
           D+L+QA+   +  GR+RGVG YVTP+ YFH+     +K+SK+E +   E   +  R+ +L
Sbjct: 7   DILSQAIRGNDPPGRIRGVGQYVTPSKYFHTAREKRRKVSKEE-DYAEERARMAARILEL 66

Query: 75  EAQIRSNLSTP-LSAHESCSRPIMFEGIEEKGKRIEVESLDKPKEKEKKGKEMMKVNEPE 134
           EA++  +   P ++  E      +   +  K     +++ D   + + K +    + +  
Sbjct: 67  EAELMKHKKVPEVATKEETDESKIKSQMASK----SIDTSDDANDHDAKEENRQVLEDLT 126

Query: 135 LDVLKERDLIKMPTEKEVVCESTSTL 156
           ++ L      K+  E + VC ST TL
Sbjct: 127 IEDLTIEKQDKVGEENKYVCASTETL 147

[Close]

BLAST of MELO3C019057 vs. NCBI nr
Match: gi|764629373|ref|XP_011469428.1| (PREDICTED: uncharacterized protein LOC105352954 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.3 bits (142), Expect = 7.4e-06
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 15  DVLTQALGTKEHNGRVRGVGGYVTPTTYFHSVKKISKDEANILVENEELRRRVSKLEAQI 74
           DVLT  LGT E++GRVRGVGG+V P +YFH + K +K     L  ++  R+R+ K+ A+ 
Sbjct: 54  DVLTTTLGTPEYSGRVRGVGGFVKPESYFH-LPKCAK-----LYSDDSARQRIKKMVAEE 113

Query: 75  RSNLSTPLSAHESCSRPIMFEGIEEKGKRIEVESLDKPKEKEKKGKEMMKVNE 128
            +N    + A E          + E+  R+E   + K K+ ++  K +  +N+
Sbjct: 114 NNN----ILAVERAQWAEKEASLVERLMRLEAMLMGKDKQIDESQKSVTLLND 156

The following BLAST results are available for this feature:

BLAST of MELO3C019057 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109765\|ref\|XP_008454865.1\|	1.8e-23	79.45	PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo]	[more]
gi\|778708464\|ref\|XP_011656204.1\|	1.4e-12	48.98	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]
gi\|659134106\|ref\|XP_008467031.1\|	4.4e-06	27.40	PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo]	[more]
gi\|764629373\|ref\|XP_011469428.1\|	7.4e-06	33.63	PREDICTED: uncharacterized protein LOC105352954 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019057T1	MELO3C019057T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 53..80 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019057	Cucumber (Gy14) v2	cgybmeB286
MELO3C019057	Cucumber (Chinese Long) v3	cucmeB337
MELO3C019057	Watermelon (97103) v2	mewmbB536
MELO3C019057	Wax gourd	mewgoB641
MELO3C019057	Cucurbita maxima (Rimu)	cmameB612
MELO3C019057	Cucurbita moschata (Rifu)	cmomeB608
MELO3C019057	Wild cucumber (PI 183967)	cpimeB331
MELO3C019057	Cucumber (Chinese Long) v2	cumeB272
MELO3C019057	Watermelon (Charleston Gray)	mewcgB528
MELO3C019057	Bottle gourd (USVL1VR-Ls)	lsimeB158