MELO3C019042 (gene) Melon (DHL92) v3.5.1

NameMELO3C019042
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr8 : 10212787 .. 10213346 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGGTATTAATTTCATAATGCAATTATACATATTTTTTATAATCACAATCATCAACTAATCTCCCTAAGTTACATTTGTACAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGA

mRNA sequence

ATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGA

Coding sequence (CDS)

ATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGA

Protein sequence

MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK*
BLAST of MELO3C019042 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.8e-47
Identity = 93/159 (58.49%), Postives = 120/159 (75.47%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MAEKL G  ++A+  IDCR+K+LK+T+ AIAEM GP+CSGFGWN+E +CI+ E++LFD+W
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           V+S PA KGLL+  FPYYD+LTYVFG+DRATG  +ETF DVGSN P    D   +GD  +
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-N 488

Query: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
           ED P +YS+GV I  D++   R  +ASE +  SSGSKRK
Sbjct: 489 EDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRK 526

BLAST of MELO3C019042 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.7e-46
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MA K+PG+NI AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W
Sbjct: 407 MAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 466

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFN----DTIPLG 120
             SHPA KGLL+KSF +YD+L+YVFGKDRATG R+E+F D+GSN P  ++    D +P  
Sbjct: 467 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMP-- 526

Query: 121 DSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
              D D P MYS G+++SPD++   R  + SERRN SSGSKRK
Sbjct: 527 ---DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRK 561

BLAST of MELO3C019042 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           M E LPG  ++A P I+ RV+ L+K + AI EMRGP+CSGFGWNE  + I  E+ +F+ W
Sbjct: 63  MGELLPGCGMKARPHIESRVRLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEEW 122

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPN 108
           +KSHP  KGL +KSFP+YD+L  VFGKDRA G   E+  D    + N
Sbjct: 123 LKSHPNAKGLRNKSFPFYDELAQVFGKDRANGEGVESPADAVEEIAN 169

BLAST of MELO3C019042 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-24
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           M +  PG  ++A P I+ RV+  +K Y AI EMRGP+CSGFGWNE  + I  E+ +F+ W
Sbjct: 61  MEDIQPGCGMKARPHIESRVRLWRKQYFAIEEMRGPNCSGFGWNELDKSITCEKSIFEDW 120

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           +KSHP  KGL +KSFPYYD+L+ VFGKDRA G   E+  D    + N   +T P    H 
Sbjct: 121 LKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEENT-PQQSEHQ 180

Query: 121 ED 123
           ++
Sbjct: 181 KE 181

BLAST of MELO3C019042 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 1

Query: 3   EKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVK 62
           E++P    + +P ID R+K+LK+ +HAI EM  PS  GFGWN++ +CI+ ++D+FD+WVK
Sbjct: 61  ERIPTCEFKGNPHIDSRLKTLKRQFHAITEMLEPSAGGFGWNDKDKCIVCDKDIFDNWVK 120

Query: 63  SHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDV 102
            HP+ +GL +K FPY + L+ VF KDRATG  +E+  DV
Sbjct: 121 GHPSARGLSNKPFPYLEKLSIVFVKDRATGEAAESPADV 159

BLAST of MELO3C019042 vs. TAIR10
Match: AT5G27260.1 (AT5G27260.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 32/125 (25.60%), Postives = 57/125 (45.60%), Query Frame = 1

Query: 19  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYY 78
           R+K LK  Y +  +++  S SGFGW+   +      +++  ++K+HP  K L + +F ++
Sbjct: 73  RMKYLKIQYQSCLDLQRFS-SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFF 132

Query: 79  DDLTYVFGKDRATGARSETFVD--------VGSNVPNMFNDTIPLGDSHDEDIPTMYSQG 136
           D+L  +FG+  ATG  +    D         G N    + D     + ++ D  T +   
Sbjct: 133 DELQIIFGEGVATGKNAIGLCDSTDGLTYRAGENPRKEYVD--DFDNVYEYDTTTHHESS 192

BLAST of MELO3C019042 vs. TAIR10
Match: AT1G30140.1 (AT1G30140.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 24/75 (32.00%), Postives = 42/75 (56.00%), Query Frame = 1

Query: 19  RVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYY 78
           R+K LK  Y +  +++  S SGFGW+ E +      +++  ++K+HP  K +  +S  ++
Sbjct: 69  RLKFLKNLYQSYLDLKRFS-SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHF 128

Query: 79  DDLTYVFGKDRATGA 94
           +DL  +FG   ATG+
Sbjct: 129 EDLQIIFGDVVATGS 142

BLAST of MELO3C019042 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.1e-88
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW
Sbjct: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD
Sbjct: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120

Query: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
           EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK
Sbjct: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 159

BLAST of MELO3C019042 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 2.3e-81
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MAEKLPGTNIQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           +KSHPA KGLLHKSFPYYDDL+YVFGKDRATGARSETF +VGSNV NMFNDTIPLGDSHD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
           EDIPTMYSQGVH+SPDEMFGIRAGQASERRNCSS SKRK
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRK 210

BLAST of MELO3C019042 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 95/159 (59.75%), Postives = 123/159 (77.36%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MA K+PG NI AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W
Sbjct: 226 MAFKIPGCNIHAS-TIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDW 285

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           VKSHP  KGLL+KSFP+YD+  YVFGKDRATG R+++F DVGSN P  + D      + D
Sbjct: 286 VKSHPVAKGLLNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGY-DAFVADATPD 345

Query: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
            D P MYSQG+++SPD++ G R  + SERRN SSGSK+K
Sbjct: 346 TDFPPMYSQGLNMSPDDLMGTRITRVSERRNVSSGSKQK 382

BLAST of MELO3C019042 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 195.3 bits (495), Expect = 8.3e-47
Identity = 93/159 (58.49%), Postives = 120/159 (75.47%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MAEKL G  ++A+  IDCR+K+LK+T+ AIAEM GP+CSGFGWN+E +CI+ E++LFD+W
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHD 120
           V+S PA KGLL+  FPYYD+LTYVFG+DRATG  +ETF DVGSN P    D   +GD  +
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-N 488

Query: 121 EDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
           ED P +YS+GV I  D++   R  +ASE +  SSGSKRK
Sbjct: 489 EDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRK 526

BLAST of MELO3C019042 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 94/163 (57.67%), Postives = 124/163 (76.07%), Query Frame = 1

Query: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60
           MA K+PG+NI AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W
Sbjct: 407 MAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 466

Query: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFN----DTIPLG 120
             SHPA KGLL+KSF +YD+L+YVFGKDRATG R+E+F D+GSN P  ++    D +P  
Sbjct: 467 --SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMP-- 526

Query: 121 DSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGSKRK 160
              D D P MYS G+++SPD++   R  + SERRN SSGSKRK
Sbjct: 527 ---DTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRK 561

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.8e-4758.49Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME3.7e-4657.67Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A162AHN3_DAUCA1.1e-2452.34Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1[more]
A0A161XV48_DAUCA5.2e-2447.54Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1[more]
A0A0A9TMG5_ARUDO7.6e-2349.49Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G27260.12.6e-0625.60 unknown protein[more]
AT1G30140.19.8e-0632.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659111565|ref|XP_008455793.1|1.1e-88100.00PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|2.3e-8192.45PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|1.2e-4859.75PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|8.3e-4758.49retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136287|gb|ADN34114.1|5.3e-4657.67retrotransposon protein [Cucumis melo subsp. melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019042T1MELO3C019042T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 1..101
score: 2.7
NoneNo IPR availablePANTHERPTHR31704:SF16SUBFAMILY NOT NAMEDcoord: 1..101
score: 2.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None