MELO3C019007 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019007
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr7 : 15349597 .. 15350009 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATACTCCCTCACCTATGTGATCTCTGCTTTAAAAGCCAGTAAATTGTTAAGGAAGGGTTGTATGGCCTACCTAGCACATGTGATGGATACACAGAGTAGTAAGCTGAAGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCTGGACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGTCTGGAACGGCACCCATTTCACAAGCTCCCTATAGAATGGCACCGATTGAACTGAGAGAGTTAAAGTCGCAATTGCAGGAATTGGTGGATAAGGGCTTTATCGGACCTAGTGCATCTCCGTGGGGTGCACCGATGTTGTTTGTTAAACAGAAGGATGGTACATTGAGGTTATGTATTAAACTACCGATAGTTAAATAA

mRNA sequence

AAAAATACTCCCTCACCTATGTGATCTCTGCTTTAAAAGCCAGTAAATTGTTAAGGAAGGGTTGTATGGCCTACCTAGCACATGTGATGGATACACAGAGTAGTAAGCTGAAGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCTGGACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGTCTGGAACGGCACCCATTTCACAAGCTCCCTATAGAATGGCACCGATTGAACTGAGAGAGTTAAAGTCGCAATTGCAGGAATTGGTGGATAAGGGCTTTATCGGACCTAGTGCATCTCCGTGGGGTGCACCGATGTTGTTTGTTAAACAGAAGGATGGTACATTGAGGTTATGTATTAAACTACCGATAGTTAAATAA

Coding sequence (CDS)

AAAAATACTCCCTCACCTATGTGATCTCTGCTTTAAAAGCCAGTAAATTGTTAAGGAAGGGTTGTATGGCCTACCTAGCACATGTGATGGATACACAGAGTAGTAAGCTGAAGCTTGAAGATATACCAGTGGTAAGAGAATTCCCAGATGTATTTCCTGAAGAGTTATCTGGACTACCGCCTGATAGAGAGATTGAATTCTCAATTGATTTAGTGTCTGGAACGGCACCCATTTCACAAGCTCCCTATAGAATGGCACCGATTGAACTGAGAGAGTTAAAGTCGCAATTGCAGGAATTGGTGGATAAGGGCTTTATCGGACCTAGTGCATCTCCGTGGGGTGCACCGATGTTGTTTGTTAAACAGAAGGATGGTACATTGAGGTTATGTATTAAACTACCGATAGTTAAATAA

Protein sequence

KYSLTYVISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEFSIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTLRLCIKLPIVK*

Homology

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BLAST of MELO3C019007 vs. TrEMBL
Match: M5WLY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.4e-47
Identity = 91/124 (73.39%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIPV+++FPDVFPE+L GLPP REIEF
Sbjct: 196 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVIQDFPDVFPEDLPGLPPHREIEF 255

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDGT+
Sbjct: 256 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPWGAPVLFVKKKDGTM 315

Query: 127 RLCI 131
           RLC+
Sbjct: 316 RLCV 319

[Close]

BLAST of MELO3C019007 vs. TrEMBL
Match: M5WXB0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014973mg PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 89/124 (71.77%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIP++++FPDVFPE+L G+PP REIEF
Sbjct: 299 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPIIQDFPDVFPEDLPGVPPQREIEF 358

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDGT+
Sbjct: 359 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFICPSFSPWGAPVLFVKKKDGTM 418

Query: 127 RLCI 131
           RLC+
Sbjct: 419 RLCV 422

[Close]

BLAST of MELO3C019007 vs. TrEMBL
Match: M5VT03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 91/124 (73.39%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIPVV++FPDVFPE+L GLPP REIEF
Sbjct: 452 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVVQDFPDVFPEDLPGLPPQREIEF 511

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDG +
Sbjct: 512 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPWGAPILFVKKKDGIM 571

Query: 127 RLCI 131
           RLC+
Sbjct: 572 RLCV 575

[Close]

BLAST of MELO3C019007 vs. TrEMBL
Match: A0A061FQA2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_043787 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 92/124 (74.19%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           VISA+KASKL++KG   YLA+V+DT   + KLED+P+V EFPDVFP++L GLPPDRE+EF
Sbjct: 281 VISAIKASKLVQKGYPTYLAYVIDTSKGEPKLEDVPIVSEFPDVFPDDLPGLPPDRELEF 340

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            IDL+ GTAPIS  PYRMAP EL+ELK QLQELVDKGFI PS SPWGAP+LFVK+KDGTL
Sbjct: 341 PIDLLPGTAPISIPPYRMAPAELKELKVQLQELVDKGFIRPSISPWGAPVLFVKKKDGTL 400

Query: 127 RLCI 131
           RLCI
Sbjct: 401 RLCI 404

[Close]

BLAST of MELO3C019007 vs. TrEMBL
Match: A0A061DW51_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 92/124 (74.19%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           VISA+KASKL++KG   YLA+V+DT   + KLED+P+V EFPDVFP++L GLPPDRE+EF
Sbjct: 471 VISAIKASKLVQKGYPTYLAYVIDTSKGEPKLEDVPIVSEFPDVFPDDLPGLPPDRELEF 530

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            IDL+ GTAPIS  PYRMAP EL+ELK QLQELVDKGFI PS SPWGAP+LFVK+KDGTL
Sbjct: 531 PIDLLPGTAPISIPPYRMAPAELKELKVQLQELVDKGFIRPSISPWGAPILFVKKKDGTL 590

Query: 127 RLCI 131
           RLCI
Sbjct: 591 RLCI 594

[Close]

BLAST of MELO3C019007 vs. NCBI nr
Match: gi|595885005|ref|XP_007213082.1| (hypothetical protein PRUPE_ppa021229mg [Prunus persica])

HSP 1 Score: 194.9 bits (494), Expect = 9.2e-47
Identity = 91/124 (73.39%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIPV+++FPDVFPE+L GLPP REIEF
Sbjct: 196 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVIQDFPDVFPEDLPGLPPHREIEF 255

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDGT+
Sbjct: 256 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPWGAPVLFVKKKDGTM 315

Query: 127 RLCI 131
           RLC+
Sbjct: 316 RLCV 319

[Close]

BLAST of MELO3C019007 vs. NCBI nr
Match: gi|595852081|ref|XP_007210241.1| (hypothetical protein PRUPE_ppa014973mg, partial [Prunus persica])

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-46
Identity = 89/124 (71.77%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIP++++FPDVFPE+L G+PP REIEF
Sbjct: 299 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPIIQDFPDVFPEDLPGVPPQREIEF 358

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDGT+
Sbjct: 359 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFICPSFSPWGAPVLFVKKKDGTM 418

Query: 127 RLCI 131
           RLC+
Sbjct: 419 RLCV 422

[Close]

BLAST of MELO3C019007 vs. NCBI nr
Match: gi|595790143|ref|XP_007198824.1| (hypothetical protein PRUPE_ppb020037mg [Prunus persica])

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-46
Identity = 91/124 (73.39%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISA+ A +LLRKGC  Y+AHV+DT+ + L+LEDIPVV++FPDVFPE+L GLPP REIEF
Sbjct: 452 LISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVVQDFPDVFPEDLPGLPPQREIEF 511

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            I+L  GT PISQAPYRMAP ELRELK+QLQELVDKGFI PS SPWGAP+LFVK+KDG +
Sbjct: 512 VIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPWGAPILFVKKKDGIM 571

Query: 127 RLCI 131
           RLC+
Sbjct: 572 RLCV 575

[Close]

BLAST of MELO3C019007 vs. NCBI nr
Match: gi|659111300|ref|XP_008455681.1| (PREDICTED: uncharacterized protein LOC103495797 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 7.8e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 29  MDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEFSIDLVSGTAPISQAPYRMAPIE 88
           MDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEFSIDLVSGTAPISQAPYRMAPIE
Sbjct: 1   MDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEFSIDLVSGTAPISQAPYRMAPIE 60

Query: 89  LRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKD 124
           LRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKD
Sbjct: 61  LRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKD 95

[Close]

BLAST of MELO3C019007 vs. NCBI nr
Match: gi|823218434|ref|XP_012441885.1| (PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii])

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 7   VISALKASKLLRKGCMAYLAHVMDTQSSKLKLEDIPVVREFPDVFPEELSGLPPDREIEF 66
           +ISAL A +LLRKG  A+LA+++DT+ S LKLE +PVV EFPDVFPEEL GLPPDRE+EF
Sbjct: 496 IISALSAQRLLRKGNEAFLAYILDTRGSDLKLEQVPVVNEFPDVFPEELPGLPPDREVEF 555

Query: 67  SIDLVSGTAPISQAPYRMAPIELRELKSQLQELVDKGFIGPSASPWGAPMLFVKQKDGTL 126
            ID++ GT PIS  PYRMAP EL+ELK+QLQEL+DKGFI PS SPWGAP+LFVK+KDG+L
Sbjct: 556 VIDVIPGTTPISMTPYRMAPAELKELKAQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSL 615

Query: 127 RLCI 131
           RLCI
Sbjct: 616 RLCI 619

The following BLAST results are available for this feature:

BLAST of MELO3C019007 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WLY8_PRUPE	6.4e-47	73.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1	[more]
M5WXB0_PRUPE	1.9e-46	71.77	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014973mg PE=4 S...	[more]
M5VT03_PRUPE	1.9e-46	73.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1	[more]
A0A061FQA2_THECC	1.2e-45	74.19	Uncharacterized protein OS=Theobroma cacao GN=TCM_043787 PE=4 SV=1	[more]
A0A061DW51_THECC	1.2e-45	74.19	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV...	[more]

BLAST of MELO3C019007 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595885005\|ref\|XP_007213082.1\|	9.2e-47	73.39	hypothetical protein PRUPE_ppa021229mg [Prunus persica]	[more]
gi\|595852081\|ref\|XP_007210241.1\|	2.7e-46	71.77	hypothetical protein PRUPE_ppa014973mg, partial [Prunus persica]	[more]
gi\|595790143\|ref\|XP_007198824.1\|	2.7e-46	73.39	hypothetical protein PRUPE_ppb020037mg [Prunus persica]	[more]
gi\|659111300\|ref\|XP_008455681.1\|	7.8e-46	100.00	PREDICTED: uncharacterized protein LOC103495797 [Cucumis melo]	[more]
gi\|823218434\|ref\|XP_012441885.1\|	1.0e-45	72.58	PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019007T1	MELO3C019007T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 72..130 score: 9.8
None	No IPR available	PANTHER	PTHR10178	GAG/POL/ENV POLYPROTEIN	coord: 34..126 score: 4.8
None	No IPR available	PANTHER	PTHR10178:SF283	SUBFAMILY NOT NAMED	coord: 34..126 score: 4.8
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 43..130 score: 1.33

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019007	Cucurbita pepo (Zucchini)	cpemeB199
MELO3C019007	Cucurbita pepo (Zucchini)	cpemeB205
MELO3C019007	Cucurbita pepo (Zucchini)	cpemeB421
MELO3C019007	Cucumber (Gy14) v2	cgybmeB259
MELO3C019007	Silver-seed gourd	carmeB0925
MELO3C019007	Silver-seed gourd	carmeB0993
MELO3C019007	Cucumber (Chinese Long) v3	cucmeB304
MELO3C019007	Watermelon (97103) v2	mewmbB461
MELO3C019007	Watermelon (97103) v2	mewmbB466
MELO3C019007	Cucurbita maxima (Rimu)	cmameB302
MELO3C019007	Cucurbita maxima (Rimu)	cmameB698
MELO3C019007	Cucurbita moschata (Rifu)	cmomeB297
MELO3C019007	Cucurbita moschata (Rifu)	cmomeB690
MELO3C019007	Wild cucumber (PI 183967)	cpimeB298
MELO3C019007	Cucumber (Chinese Long) v2	cumeB303
MELO3C019007	Watermelon (Charleston Gray)	mewcgB456
MELO3C019007	Watermelon (97103) v1	mewmB494