MELO3C018995 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018995
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription elongation factor SPT5
Location	chr7 : 15022957 .. 15023130 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTTCTTCCTAGAAATCCAGACCTACGGGTTTTGGGAAGAAGATCTCCATCAAGCCCAAAACACAAGGATCCTCATCCTAGTCGCACTCCGTTAAACCCGATTCAAAGCAAACCCAGAGACCTAAGAAAGGCGTCGCAGACTCCATTCTTGACGCAGATAAGTGGATGA

mRNA sequence

ATGAGTCTTCTTCCTAGAAATCCAGACCTACGGGTTTTGGGAAGAAGATCTCCATCAAGCCCAAAACACAAGGATCCTCATCCTAGTCGCACTCCGTTAAACCCGATTCAAAGCAAACCCAGAGACCTAAGAAAGGCGTCGCAGACTCCATTCTTGACGCAGATAAGTGGATGA

Coding sequence (CDS)

ATGAGTCTTCTTCCTAGAAATCCAGACCTACGGGTTTTGGGAAGAAGATCTCCATCAAGCCCAAAACACAAGGATCCTCATCCTAGTCGCACTCCGTTAAACCCGATTCAAAGCAAACCCAGAGACCTAAGAAAGGCGTCGCAGACTCCATTCTTGACGCAGATAAGTGGATGA

Protein sequence

MSLLPRNPDLRVLGRRSPSSPKHKDPHPSRTPLNPIQSKPRDLRKASQTPFLTQISG*

Homology

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BLAST of MELO3C018995 vs. TrEMBL
Match: A0A0A0KY30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G343080 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-06
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 6   RNPDLRVLGRRSPSSPKHKDPHPSRTPLNPIQSKPRDLRKASQTP 51
           RNP LR+LGRRS SSP+ K PHP+ TP+  I+SKP+D  + S  P
Sbjct: 82  RNPSLRILGRRSSSSPECKPPHPNATPVYLIRSKPKDPNRLSWNP 126

The following BLAST results are available for this feature:

BLAST of MELO3C018995 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY30_CUCSA	8.9e-06	57.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G343080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018995T1	MELO3C018995T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018995	Cucumber (Chinese Long) v3	cucmeB304
MELO3C018995	Cucumber (Chinese Long) v3	cucmeB326
MELO3C018995	Watermelon (97103) v2	mewmbB461
MELO3C018995	Watermelon (97103) v2	mewmbB466
MELO3C018995	Cucumber (Gy14) v1	cgymeB457
MELO3C018995	Cucurbita maxima (Rimu)	cmameB302
MELO3C018995	Cucurbita maxima (Rimu)	cmameB309
MELO3C018995	Cucurbita maxima (Rimu)	cmameB698
MELO3C018995	Cucurbita moschata (Rifu)	cmomeB297
MELO3C018995	Cucurbita moschata (Rifu)	cmomeB690
MELO3C018995	Wild cucumber (PI 183967)	cpimeB298
MELO3C018995	Wild cucumber (PI 183967)	cpimeB320
MELO3C018995	Cucumber (Chinese Long) v2	cumeB303
MELO3C018995	Cucumber (Chinese Long) v2	cumeB322
MELO3C018995	Watermelon (Charleston Gray)	mewcgB451
MELO3C018995	Watermelon (Charleston Gray)	mewcgB456
MELO3C018995	Watermelon (97103) v1	mewmB494
MELO3C018995	Cucurbita pepo (Zucchini)	cpemeB199
MELO3C018995	Cucurbita pepo (Zucchini)	cpemeB205
MELO3C018995	Cucurbita pepo (Zucchini)	cpemeB421
MELO3C018995	Cucumber (Gy14) v2	cgybmeB259
MELO3C018995	Cucumber (Gy14) v2	cgybmeB278
MELO3C018995	Silver-seed gourd	carmeB0925
MELO3C018995	Silver-seed gourd	carmeB0993