MELO3C018970 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018970
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTBC1 domain family member 14
Locationchr7 : 14329060 .. 14329428 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCTGTTCTGAAATCCGCCTCGAGGAAGATTGCACAAGTGCTATGAATATTTCTACAGCTCCTACTATTGACTTCATTGCTTTTAGTGCGAGGTCCTCTACCCGTGGCAGTGACAAGCACAATGGAAAACTAATTCCTGTCTGTGAGCATTGCAAAAAGCAATGGCATACCAAAAAACAGTGTTGGAAGTTACATGGTCGTCCCCCAGGAGGGGAGAAACGCTCTCTCAATGACAAACAGAACACAGGGCGTGTGTATGTGAGTGACTCTGCTAAACCTTCTCAACCACCTGATCCACATGGGAACCAGATTGATCCTAGTTTAGCTATTTTAGGTGCCACTGTCCAATCAAGTATACCTTAG

mRNA sequence

ATGGAAGTCTGTTCTGAAATCCGCCTCGAGGAAGATTGCACAAGTGCTATGAATATTTCTACAGCTCCTACTATTGACTTCATTGCTTTTAGTGCGAGGTCCTCTACCCGTGGCAGTGACAAGCACAATGGAAAACTAATTCCTGTCTGTGAGCATTGCAAAAAGCAATGGCATACCAAAAAACAGTGTTGGAAGTTACATGGTCGTCCCCCAGGAGGGGAGAAACGCTCTCTCAATGACAAACAGAACACAGGGCGTGTGTATGTGAGTGACTCTGCTAAACCTTCTCAACCACCTGATCCACATGGGAACCAGATTGATCCTAGTTTAGCTATTTTAGGTGCCACTGTCCAATCAAGTATACCTTAG

Coding sequence (CDS)

ATGGAAGTCTGTTCTGAAATCCGCCTCGAGGAAGATTGCACAAGTGCTATGAATATTTCTACAGCTCCTACTATTGACTTCATTGCTTTTAGTGCGAGGTCCTCTACCCGTGGCAGTGACAAGCACAATGGAAAACTAATTCCTGTCTGTGAGCATTGCAAAAAGCAATGGCATACCAAAAAACAGTGTTGGAAGTTACATGGTCGTCCCCCAGGAGGGGAGAAACGCTCTCTCAATGACAAACAGAACACAGGGCGTGTGTATGTGAGTGACTCTGCTAAACCTTCTCAACCACCTGATCCACATGGGAACCAGATTGATCCTAGTTTAGCTATTTTAGGTGCCACTGTCCAATCAAGTATACCTTAG

Protein sequence

MEVCSEIRLEEDCTSAMNISTAPTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWHTKKQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDPHGNQIDPSLAILGATVQSSIP*
Homology
[Close]
BLAST of MELO3C018970 vs. TrEMBL
Match: A5B2V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031400 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAMNIST---APTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWH 61
           E  SE+R EE     M  S    APT+D  A +ARS       H  +  P C++CKK  H
Sbjct: 417 EAFSEVRREESRKKVMMGSKEQPAPTLDASALAARSFNSSGGDHQKRDRPWCDYCKKPSH 476

Query: 62  TKKQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDP 102
            K+ CWKLHG+P   + +  +D+   GR +V+ +++ +  P+P
Sbjct: 477 YKEACWKLHGKPADWKPKPRSDRD--GRAHVAANSESTFVPEP 517

[Close]
BLAST of MELO3C018970 vs. TrEMBL
Match: A5ASK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-08
Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAM----NISTAPTIDFIAFSARSSTRGSDKHNGKL--IPVCEHCKK 61
           EV SEIR E+     M       T P I+      +      +K N K    P C+HCKK
Sbjct: 165 EVFSEIRREKSRRRVMLQKQEPKTNPEIESSTLITKGPKANVEKRNFKQGEKPWCDHCKK 224

Query: 62  QWHTKKQCWKLHGRPPGGEKRSLNDKQNTGRVY-VSDSAKPSQPPDPH 103
            WHT + CWKLHG+PP  +K +  D    GRV+ VS+  + +QP   H
Sbjct: 225 PWHTHETCWKLHGKPPNWKKENGGD----GRVFQVSNEDQGNQPSQAH 268

[Close]
BLAST of MELO3C018970 vs. TrEMBL
Match: A5C9Q9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008809 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAMNIST---APTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWH 61
           E  SE+R EE     M  S    APT+D  A +ARS          +  P C++CKK  H
Sbjct: 215 EAFSEVRXEESRKKVMMGSKEQPAPTLDGSALAARSFNSSGGDRQKRDRPWCDYCKKPGH 274

Query: 62  TKKQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDP 102
            K+ CWKLHG+P   + +  +D+   GR +V+ +++ +  P+P
Sbjct: 275 YKEACWKLHGKPXDWKPKPRSDRD--GRAHVAANSESTSVPEP 315

[Close]
BLAST of MELO3C018970 vs. TrEMBL
Match: A5C2W3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027440 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAMNIST---APTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWH 61
           E  SE+R EE     M  S    APT+D  A +ARS          +  P C++CKK  H
Sbjct: 147 EAFSEVRREESRKKVMMGSKEQPAPTLDASALAARSFNSSGGDRQKRDRPWCDYCKKPGH 206

Query: 62  TKKQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDP 102
            K+ CWKLHG+P   + +  +D+   GR +V+ +++ +  P+P
Sbjct: 207 YKEACWKLHGKPADWKPKPQSDRD--GRAHVAANSESTSVPEP 247

[Close]
BLAST of MELO3C018970 vs. TrEMBL
Match: A5BAZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004170 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.3e-08
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAMNIST---APTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWH 61
           E  SE+R EE     +  S    APT+D  AF+ARS          +  P C++CKK  H
Sbjct: 204 EAFSEVRREESRKKVIMGSKEQPAPTLDASAFAARSFNSSGGDRQKRDRPWCDYCKKPGH 263

Query: 62  TKKQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDP 102
            K+ CWKLHG+P   + +  +D+   GR +V+ ++  +  P+P
Sbjct: 264 YKEACWKLHGKPADWKPKPRSDRD--GRAHVAANSASTSVPEP 304

[Close]
BLAST of MELO3C018970 vs. NCBI nr
Match: gi|659120823|ref|XP_008460367.1| (PREDICTED: uncharacterized protein LOC103499210 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 83/121 (68.60%), Postives = 94/121 (77.69%), Query Frame = 1 

Query: 1   MEVCSEIRLEEDCTSAMNISTAPTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWHTK 60
           MEV  EIRLEE+CTSA++I   P IDF AFSARSS  GSDKH+ K IPVCE+ KKQWHTK
Sbjct: 74  MEVYYEIRLEENCTSAVSILATPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTK 133

Query: 61  KQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDSAKPSQPPDPHGNQIDPSLAILGATVQSS 120
           ++ WKLHGR PGG+KR  NDKQNTG  YVS+S+ PSQP DPHGNQ   S A LGA VQS 
Sbjct: 134 ERYWKLHGRSPGGKKRDPNDKQNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSG 193

Query: 121 I 122
           +
Sbjct: 194 L 194

[Close]
BLAST of MELO3C018970 vs. NCBI nr
Match: gi|659125044|ref|XP_008462481.1| (PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 9.5e-35
Identity = 75/124 (60.48%), Postives = 91/124 (73.39%), Query Frame = 1 

Query: 1   MEVCSEIRLEEDCTSAMNISTAPTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWHTK 60
           +EVC E+ LEED T+AM + T PTID +AFSARSS   SDK+NGKLI VCEHCKKQWHTK
Sbjct: 55  IEVCFEVCLEEDRTNAMGVLTTPTIDIVAFSARSSNHDSDKNNGKLISVCEHCKKQWHTK 114

Query: 61  KQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDS--AKPSQPPDPHGNQIDPSLAILGATVQ 120
            +CWKLHGRPPGG+K+S N+KQN+GR Y+S++  A  SQ   P  +Q       LGA  Q
Sbjct: 115 DRCWKLHGRPPGGKKQSSNEKQNSGRAYISETTLASTSQSTGPIASQ--TKTPTLGAIAQ 174

Query: 121 SSIP 123
           S +P
Sbjct: 175 SRVP 176

[Close]
BLAST of MELO3C018970 vs. NCBI nr
Match: gi|659114444|ref|XP_008457057.1| (PREDICTED: uncharacterized protein LOC103496827 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 6.4e-31
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MEVCSEIRLEEDCTSAMNISTAPTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWHTK 60
           MEVC ++RLEED T+AM++ T PTID  AFSARSS   S+K+NGK I VC HCKKQWHTK
Sbjct: 1   MEVCFKVRLEEDRTNAMDVLTTPTIDSAAFSARSSNHDSNKNNGKSIHVCGHCKKQWHTK 60

Query: 61  KQCWKLHGRPPGGEKRSLNDKQNTGRVYVSDS--AKPSQPPDPHGNQ 106
           +QCWKLH RPP G+K+S N+KQN+GRVY+S++  A  SQ   P  +Q
Sbjct: 61  EQCWKLHNRPPEGKKQSSNEKQNSGRVYISETTPASTSQSTGPTASQ 107

[Close]
BLAST of MELO3C018970 vs. NCBI nr
Match: gi|659121783|ref|XP_008460810.1| (PREDICTED: uncharacterized protein LOC103499577 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 15 SAMNISTAPTIDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWHTKKQCWKLHGRPPGGE 74
          S  N+ +    + +AFSA+S T      NGK I VCE+CKKQ H K QCWKLH RPP G 
Sbjct: 9  SLSNVPSNYITNSVAFSAQSLTHD----NGKPILVCEYCKKQRHIKDQCWKLHSRPPRGN 68

Query: 75 KRSLNDKQNTGRVYVSDSAKPSQ 98
          KRS N++QN  R    ++A  SQ
Sbjct: 69 KRSSNEQQNLRRTDSRENASTSQ 87

[Close]
BLAST of MELO3C018970 vs. NCBI nr
Match: gi|985452899|ref|XP_006481138.2| (PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 2   EVCSEIRLEEDCTSAM--NISTAPT-IDFIAFSARSSTRGSDKHNGKLIPVCEHCKKQWH 61
           EV SE+R EE     M   +    T +D  A  AR + +  D+  GK  P C+HC+K WH
Sbjct: 225 EVFSEVRREEARRHVMLKRVEEPKTDLDGSALVARGNEQQGDRRGGKQRPWCDHCRKPWH 284

Query: 62  TKKQCWKLHGRPPGGEKRSLNDKQNTG--RVYVSDSAKPSQ 98
           T++ CWKLHG+P   +K+S +D +  G  R +   +  P Q
Sbjct: 285 TRESCWKLHGKPANWKKKSGDDARPAGDNRAFQVSTTNPEQ 325

The following BLAST results are available for this feature:
BLAST of MELO3C018970 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B2V6_VITVI1.8e-0835.92Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031400 PE=4 SV=1[more]
A5ASK2_VITVI3.1e-0837.96Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005355 PE=4 SV=1[more]
A5C9Q9_VITVI5.3e-0834.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008809 PE=4 SV=1[more]
A5C2W3_VITVI5.3e-0834.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027440 PE=4 SV=1[more]
A5BAZ3_VITVI5.3e-0834.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004170 PE=4 SV=1[more]
BLAST of MELO3C018970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120823|ref|XP_008460367.1|1.4e-3868.60PREDICTED: uncharacterized protein LOC103499210 [Cucumis melo][more]
gi|659125044|ref|XP_008462481.1|9.5e-3560.48PREDICTED: uncharacterized protein LOC103500824 [Cucumis melo][more]
gi|659114444|ref|XP_008457057.1|6.4e-3162.62PREDICTED: uncharacterized protein LOC103496827 [Cucumis melo][more]
gi|659121783|ref|XP_008460810.1|1.1e-1149.40PREDICTED: uncharacterized protein LOC103499577 [Cucumis melo][more]
gi|985452899|ref|XP_006481138.2|1.1e-0937.62PREDICTED: uncharacterized protein LOC102612481 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006206Mevalonate/galactokinase
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Molecular Function
TermDefinition
GO:0016773phosphotransferase activity, alcohol group as acceptor
GO:0005524ATP binding
GO:0016301kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006012 galactose metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0004335 galactokinase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU63684melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018970T1MELO3C018970T1mRNA
MELO3C018970T2MELO3C018970T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU63684MU63684transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006206Mevalonate/galactokinasePANTHERPTHR10457MEVALONATE KINASE/GALACTOKINASEcoord: 1..80
score: 2.3
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 1..77
score: 9.5
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 2..59
score: 5.39
NoneNo IPR availablePANTHERPTHR10457:SF12SUBFAMILY NOT NAMEDcoord: 1..80
score: 2.3