MELO3C018964.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018964.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein MNN4-like
Location	chr07 : 14788900 .. 14789271 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAAAAAAAATTGAAAGAAACTCCCTCCTCGTCAATAGTACCAACAAAATTTAAGAAGGTTGCCAAAGAAGCCCAAAAGAAGAGCGAGAAGGTTAGATTTGGGCTTTTAAAAATAAAGGTCAAGGCACAAAGTGTTAAAGCCATAGCAGAAGAAAAGAAAGAACAGAAGTTGAAGGAGCGGGGAGAGCTCCTCAATCGAGTTGACGAAGTAGCCCTCTCCACGGAGAAGCACAAGGCAAAGAAAACCACTGAAGAGTATTTCGAGGAGTTTAAAAACAATGGAGGAGGAAGAAGAAGAGGAGGTGGAATCTTCAAAGAAAATGAATGTTGTGATAAAAGGAAAAGATTTGGAAAATCAGGACGCTAA

mRNA sequence

ATGCAAAAAAAAAAATTGAAAGAAACTCCCTCCTCGTCAATAGTACCAACAAAATTTAAGAAGGTTGCCAAAGAAGCCCAAAAGAAGAGCGAGAAGGTTAGATTTGGGCTTTTAAAAATAAAGGTCAAGGCACAAAGTGTTAAAGCCATAGCAGAAGAAAAGAAAGAACAGAAGTTGAAGGAGCGGGGAGAGCTCCTCAATCGAGTTGACGAAGTAGCCCTCTCCACGGAGAAGCACAAGGCAAAGAAAACCACTGAAGAGTATTTCGAGGAGTTTAAAAACAATGGAGGAGGAAGAAGAAGAGGAGGTGGAATCTTCAAAGAAAATGAATGTTGTGATAAAAGGAAAAGATTTGGAAAATCAGGACGCTAA

Coding sequence (CDS)

ATGCAAAAAAAAAAATTGAAAGAAACTCCCTCCTCGTCAATAGTACCAACAAAATTTAAGAAGGTTGCCAAAGAAGCCCAAAAGAAGAGCGAGAAGGTTAGATTTGGGCTTTTAAAAATAAAGGTCAAGGCACAAAGTGTTAAAGCCATAGCAGAAGAAAAGAAAGAACAGAAGTTGAAGGAGCGGGGAGAGCTCCTCAATCGAGTTGACGAAGTAGCCCTCTCCACGGAGAAGCACAAGGCAAAGAAAACCACTGAAGAGTATTTCGAGGAGTTTAAAAACAATGGAGGAGGAAGAAGAAGAGGAGGTGGAATCTTCAAAGAAAATGAATGTTGTGATAAAAGGAAAAGATTTGGAAAATCAGGACGCTAA

Protein sequence

MQKKKLKETPSSSIVPTKFKKVAKEAQKKSEKVRFGLLKIKVKAQSVKAIAEEKKEQKLKERGELLNRVDEVALSTEKHKAKKTTEEYFEEFKNNGGGRRRGGGIFKENECCDKRKRFGKSGR

Homology

[Close]

BLAST of MELO3C018964.2 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 3  KKKLKETPSSSIVPTKFKKVAKEAQKKSEKVRFGLLKIKVKAQSVKAIAEEKKEQKLKER 62
          KK+LK    +S      +K  KE+  +  + R GLLKIKVKAQ +KA+ EEKKE KL+E+
Sbjct: 12 KKELK--TKASRAQDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREK 71

Query: 63 GELLNRVDEVALSTEKHK 81
           ELLN+VD+VALS EK K
Sbjct: 72 EELLNKVDKVALSVEKRK 87

[Close]

BLAST of MELO3C018964.2 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 3  KKKLKETPSSSIVPTKFKKVAKEAQKKSEKVRFGLLKIKVKAQSVKAIAEEKKEQKLKER 62
          KK+LK    +S      +K  KE+  +  + R GLLKIKVKAQ +KA+ EEKKE KL+E+
Sbjct: 12 KKELK--TKASRAQDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREK 71

Query: 63 GELLNRVDEVALSTEKHK 81
           ELLN+VD+VALS EK K
Sbjct: 72 EELLNKVDKVALSVEKRK 87

The following BLAST results are available for this feature:

BLAST of MELO3C018964.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465464.1	2.8e-06	53.85	PREDICTED: protein MNN4-like [Cucumis melo]	[more]

BLAST of MELO3C018964.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C018964.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018964.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	1.8e-06	53.85	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018964.2.1	MELO3C018964.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..123
None	No IPR available	COILS	Coil	Coil	coord: 48..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018964.2	Cucumber (Gy14) v2	cgybmedB257
MELO3C018964.2	Cucumber (Gy14) v1	cgymedB453
MELO3C018964.2	Cucurbita maxima (Rimu)	cmamedB352
MELO3C018964.2	Cucurbita maxima (Rimu)	cmamedB788
MELO3C018964.2	Cucurbita moschata (Rifu)	cmomedB340
MELO3C018964.2	Cucurbita moschata (Rifu)	cmomedB784
MELO3C018964.2	Cucurbita pepo (Zucchini)	cpemedB493
MELO3C018964.2	Wild cucumber (PI 183967)	cpimedB292
MELO3C018964.2	Cucumber (Chinese Long) v2	cumedB288
MELO3C018964.2	Bottle gourd (USVL1VR-Ls)	lsimedB286
MELO3C018964.2	Watermelon (Charleston Gray)	medwcgB449
MELO3C018964.2	Watermelon (97103) v1	medwmB481
MELO3C018964.2	Silver-seed gourd	carmedB0931
MELO3C018964.2	Silver-seed gourd	carmedB1005
MELO3C018964.2	Cucumber (Chinese Long) v3	cucmedB296
MELO3C018964.2	Watermelon (97103) v2	medwmbB459
MELO3C018964.2	Wax gourd	medwgoB571