MELO3C018963 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018963
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative Athila retroelement ORF1 protein
Locationchr7 : 14230231 .. 14230427 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTGCCAAGCCTAATAGCAAAATTGAAGATGTTTTGGTTAAGGTGGATTTTTTTTTTTTTATTTCCTACAGACTTCATCATTCTGGATTACGAAGCTGATCGAGAGGTTCAAACTATCTTGGGGCGGCCATTCCTATCAACTGGTTGTGCCCTTATTGATGTCCACCAAGGAATGCTGGGGTTGATGCCCTAA

mRNA sequence

ATTCATTGCCAAGCCTAATAGCAAAATTGAAGATGTTTTGGTTAAGGTGGATTTTTTTTTTTTTATTTCCTACAGACTTCATCATTCTGGATTACGAAGCTGATCGAGAGGTTCAAACTATCTTGGGGCGGCCATTCCTATCAACTGGTTGTGCCCTTATTGATGTCCACCAAGGAATGCTGGGGTTGATGCCCTAA

Coding sequence (CDS)

ATTCATTGCCAAGCCTAATAGCAAAATTGAAGATGTTTTGGTTAAGGTGGATTTTTTTTTTTTTATTTCCTACAGACTTCATCATTCTGGATTACGAAGCTGATCGAGAGGTTCAAACTATCTTGGGGCGGCCATTCCTATCAACTGGTTGTGCCCTTATTGATGTCCACCAAGGAATGCTGGGGTTGATGCCCTAA

Protein sequence

SLPSLIAKLKMFWLRWIFFFLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGMLGLMP*
Homology
[Close]
BLAST of MELO3C018963 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           F+FP DFIILDYE DREV  ILGRPFL+TG  LIDV +G L
Sbjct: 167 FIFPADFIILDYEEDREVPIILGRPFLATGRTLIDVEKGEL 207

[Close]
BLAST of MELO3C018963 vs. TrEMBL
Match: A0A0S3QWS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-07
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGMLGL 63
           F+FPTDF++LD E D +V  ILGRPFL+TG ALIDV QG L L
Sbjct: 202 FIFPTDFVVLDMEEDAKVPIILGRPFLATGRALIDVEQGQLML 244

[Close]
BLAST of MELO3C018963 vs. TrEMBL
Match: A0A151RD37_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038367 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-07
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGMLGL 63
           F+FPTDF++LD E D +V  ILGRPFL+TG ALIDV QG L L
Sbjct: 60  FIFPTDFVVLDMEEDAKVPIILGRPFLATGRALIDVQQGELML 102

[Close]
BLAST of MELO3C018963 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           FLFP DFI+LD E DR+V  ILGRPFL+T   LID HQG L
Sbjct: 423 FLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDFHQGKL 463

[Close]
BLAST of MELO3C018963 vs. TrEMBL
Match: A0A151SV10_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_014042 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.9e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGMLGL 63
           F+FP +F++LD E D +V  ILGRPFL+TG ALIDV QG L L
Sbjct: 93  FIFPANFVVLDMEEDAKVPIILGRPFLATGRALIDVQQGELML 135

[Close]
BLAST of MELO3C018963 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-08
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           FLF  DFIILDYEA++EV  I GRPFLSTG ALIDVHQG L
Sbjct: 106 FLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGEL 146

[Close]
BLAST of MELO3C018963 vs. NCBI nr
Match: gi|697131349|ref|XP_009619729.1| (PREDICTED: uncharacterized protein LOC104111685 [Nicotiana tomentosiformis])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           F+ P DFIILDYEAD EV  ILGRPFL+TG ALIDV +G L
Sbjct: 455 FILPADFIILDYEADEEVPIILGRPFLATGGALIDVREGKL 495

[Close]
BLAST of MELO3C018963 vs. NCBI nr
Match: gi|548830390|gb|ERM93431.1| (hypothetical protein AMTR_s03373p00000010 [Amborella trichopoda])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           F+FP DFIILDYE DREV  ILGRPFL+TG  LIDV +G L
Sbjct: 167 FIFPADFIILDYEEDREVPIILGRPFLATGRTLIDVEKGEL 207

[Close]
BLAST of MELO3C018963 vs. NCBI nr
Match: gi|971539862|ref|XP_015161557.1| (PREDICTED: uncharacterized protein LOC107059504 [Solanum tuberosum])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           F+FPTDF+ILD E D EV  ILGRPFL TGCALID+ +G +
Sbjct: 552 FIFPTDFVILDCEVDFEVPIILGRPFLVTGCALIDMERGQM 592

[Close]
BLAST of MELO3C018963 vs. NCBI nr
Match: gi|697107120|ref|XP_009607393.1| (PREDICTED: uncharacterized protein LOC104101615 [Nicotiana tomentosiformis])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-07
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 20  FLFPTDFIILDYEADREVQTILGRPFLSTGCALIDVHQGML 61
           F+ P DFI+LDYEAD EV  ILGRPFL+TG ALID+ +G L
Sbjct: 232 FILPADFIVLDYEADEEVPIILGRPFLATGGALIDIREGKL 272

The following BLAST results are available for this feature:
BLAST of MELO3C018963 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CWW5_AMBTC1.4e-0773.17Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=... [more]
A0A0S3QWS7_PHAAN4.0e-0767.44Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=... [more]
A0A151RD37_CAJCA6.9e-0767.44Uncharacterized protein OS=Cajanus cajan GN=KK1_038367 PE=4 SV=1[more]
A5AZ88_VITVI1.5e-0668.29Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1[more]
A0A151SV10_CAJCA9.9e-0662.79Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_... [more]
BLAST of MELO3C018963 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130345|ref|XP_008465121.1|6.8e-0878.05PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
gi|697131349|ref|XP_009619729.1|2.0e-0773.17PREDICTED: uncharacterized protein LOC104111685 [Nicotiana tomentosiformis][more]
gi|548830390|gb|ERM93431.1|2.0e-0773.17hypothetical protein AMTR_s03373p00000010 [Amborella trichopoda][more]
gi|971539862|ref|XP_015161557.1|3.4e-0768.29PREDICTED: uncharacterized protein LOC107059504 [Solanum tuberosum][more]
gi|697107120|ref|XP_009607393.1|3.4e-0768.29PREDICTED: uncharacterized protein LOC104101615 [Nicotiana tomentosiformis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018963T1MELO3C018963T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018963Cucumber (Chinese Long) v3cucmeB304
MELO3C018963Watermelon (97103) v2mewmbB466
MELO3C018963Wax gourdmewgoB566
MELO3C018963Cucumber (Gy14) v1cgymeB457
MELO3C018963Cucurbita maxima (Rimu)cmameB302
MELO3C018963Cucurbita maxima (Rimu)cmameB698
MELO3C018963Cucurbita moschata (Rifu)cmomeB297
MELO3C018963Cucurbita moschata (Rifu)cmomeB690
MELO3C018963Wild cucumber (PI 183967)cpimeB298
MELO3C018963Cucumber (Chinese Long) v2cumeB303
MELO3C018963Watermelon (Charleston Gray)mewcgB456
MELO3C018963Watermelon (97103) v1mewmB494
MELO3C018963Cucurbita pepo (Zucchini)cpemeB199
MELO3C018963Cucurbita pepo (Zucchini)cpemeB421
MELO3C018963Bottle gourd (USVL1VR-Ls)lsimeB273
MELO3C018963Cucumber (Gy14) v2cgybmeB259
MELO3C018963Silver-seed gourdcarmeB0925
MELO3C018963Silver-seed gourdcarmeB0993