MELO3C018960 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018960
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr7 : 14204361 .. 14204681 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAATTGCGAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATCCAAACCTAAAAAGCCTAAGCCATCCAAGGAAAGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

mRNA sequence

AAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAATTGCGAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATCCAAACCTAAAAAGCCTAAGCCATCCAAGGAAAGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

Coding sequence (CDS)

AAGAGTTTGAGTAAGCTGCATGGAATGCCGAAAATTGCGAAGTTGAACATCAAATCTAATTATGAGATTTTGATGTTGCAAAAAGGGAAGAATCCCAAGAATAGGGGACAAGATCAAGGAAAGGGTAATGAGAAAGTTGTTGTCAAGACATCAAAAGTTGATACTTTTATTGCACCTAAGCCAAGATCCAAACCTAAAAAGCCTAAGCCATCCAAGGAAAGAGAATGTTATCACTGTAAGAAAATTGGGCATTGGGAGAGGAACTATCCTCTTTATCTGGAAGAACTGAAGAACAACAAAGGAAGTGTTCCTTTGACTTAA

Protein sequence

KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNKGSVPLT*
Homology
[Close]
BLAST of MELO3C018960 vs. TrEMBL
Match: Q10HX7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g37554 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQG-KGNEKVVVKTSKVDTFIAP 60
           ++L++LHGM K A+ +IK N   +M+   + P N+   Q  K N   +  TS   T    
Sbjct: 237 RTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKT---- 296

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNK 101
               K +K  P+K+ EC+ CK+ GHW+RNY  YLE+LK  +
Sbjct: 297 ----KVQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQ 329

[Close]
BLAST of MELO3C018960 vs. TrEMBL
Match: Q75L70_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0095N06.9 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.4e-10
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQG-KGNEKVVVKTSKVDTFIAP 60
           ++L++LHGM K A+ +IK N   +M+   + P N+   Q  K N   +  TS   T    
Sbjct: 164 RTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKT---- 223

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNK 101
               K +K  P+K+ EC+ CK+ GHW+RNY  YLE+LK  +
Sbjct: 224 ----KVQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQ 256

[Close]
BLAST of MELO3C018960 vs. TrEMBL
Match: D3IVT9_9POAL (Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKS-NYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAP 60
           K+L++LH + K A+ +IK  N  ++M+QK  + K + +   KG  K V+     D     
Sbjct: 272 KNLTELHMLLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVL-----DGIQTN 331

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNKGSVPLT 107
           KP+ K K   P++E EC++CK+ GHW+RN   YL +LK N G+ P T
Sbjct: 332 KPKLKTKSG-PTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPST 372

[Close]
BLAST of MELO3C018960 vs. TrEMBL
Match: D2Y4I5_9POAL (Putative polyprotein (Fragment) OS=Secale vavilovii PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPK 60
           KS+++L  M K+A+ +I+  Y++LM+ K  + K  G+ + KGN K   K  K       K
Sbjct: 15  KSIAELFSMLKVAEADIQKEYQVLMVNKTTSFKKNGKGK-KGNSK---KGGKAVAHPVKK 74

Query: 61  PRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELK---NNKG 102
           P++ PK      E EC++CK  GHW+RN P YL + K   NNKG
Sbjct: 75  PKAGPK-----PETECFYCKGNGHWKRNCPKYLADKKGANNNKG 109

[Close]
BLAST of MELO3C018960 vs. TrEMBL
Match: D2Y4C5_SECCE (Putative polyprotein (Fragment) OS=Secale cereale PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-09
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPK 60
           KS+++L  M K+A+ +I+  Y++LM+ K  + K  G+ + KGN K   K  K       K
Sbjct: 15  KSIAELFSMLKVAEADIQKEYQVLMVNKTTSFKKNGKGK-KGNSK---KGGKAVAHPVKK 74

Query: 61  PRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELK---NNKG 102
           P++ PK      E EC++CK  GHW+RN P YL + K   NNKG
Sbjct: 75  PKAGPK-----PETECFYCKGNGHWKRNCPKYLADKKGANNNKG 109

[Close]
BLAST of MELO3C018960 vs. NCBI nr
Match: gi|659090012|ref|XP_008445785.1| (PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 9.5e-15
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVD 55
           KSL+KLHGM KI+KLNIKSN E+LM+QKGKNPK R  DQGKGN KVVVKTSKVD
Sbjct: 80  KSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVD 133

[Close]
BLAST of MELO3C018960 vs. NCBI nr
Match: gi|108709418|gb|ABF97213.1| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQG-KGNEKVVVKTSKVDTFIAP 60
           ++L++LHGM K A+ +IK N   +M+   + P N+   Q  K N   +  TS   T    
Sbjct: 237 RTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKT---- 296

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNK 101
               K +K  P+K+ EC+ CK+ GHW+RNY  YLE+LK  +
Sbjct: 297 ----KVQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQ 329

[Close]
BLAST of MELO3C018960 vs. NCBI nr
Match: gi|41393222|gb|AAS01945.1| (putative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNYEILMLQKGKNPKNRGQDQG-KGNEKVVVKTSKVDTFIAP 60
           ++L++LHGM K A+ +IK N   +M+   + P N+   Q  K N   +  TS   T    
Sbjct: 164 RTLAELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKT---- 223

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNK 101
               K +K  P+K+ EC+ CK+ GHW+RNY  YLE+LK  +
Sbjct: 224 ----KVQKTGPAKDAECFFCKETGHWKRNYKKYLEQLKQKQ 256

[Close]
BLAST of MELO3C018960 vs. NCBI nr
Match: gi|922483679|ref|XP_013639199.1| (PREDICTED: uncharacterized protein LOC106344346 [Brassica oleracea var. oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1 

Query: 1   KSLSKLHGMPKIAKLNIKSNY-EILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAP 60
           K+L++LHGM K  + NIK +   +LM+Q G   K +G+++GKG    +   SK++    P
Sbjct: 185 KTLTELHGMLKTVEPNIKKDTPNVLMVQGGNKFKKQGKNKGKGKSGWIANPSKLN----P 244

Query: 61  KPRSKPKKPKPSKERECYHCKKIGHWERNYPLYLEELKNNK 101
            P+ KP    PS   + ++C   GHW+RN   YLE LKN K
Sbjct: 245 SPKFKPG---PSNVDKFHYCNGSGHWKRNCEKYLENLKNKK 278

[Close]
BLAST of MELO3C018960 vs. NCBI nr
Match: gi|729376112|ref|XP_010549207.1| (PREDICTED: uncharacterized protein LOC104820463 [Tarenaya hassleriana])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 13  AKLNIKSNYEILMLQKGKNPKNRGQDQGKGNEKVVVKTSKVDTFIAPKPRSKPKKPKPSK 72
           A+  +K++  IL++Q GK+ + R + +GKGNE    K +KV  F    P+SKP K     
Sbjct: 5   AEQKVKTDKSILVMQSGKSSRKRPRRKGKGNESA--KKAKVTVF----PKSKPDKG---- 64

Query: 73  ERECYHCKKIGHWERNYPLYLEELKNNK 101
             EC +C ++GHW RN+ LYLE+LK  K
Sbjct: 65  --ECNYCHEVGHWRRNFNLYLEDLKKKK 80

The following BLAST results are available for this feature:
BLAST of MELO3C018960 vs. TrEMBL
Match NameE-valueIdentityDescription
Q10HX7_ORYSJ8.4e-1037.62Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap... [more]
Q75L70_ORYSJ8.4e-1037.62Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0095N06.9 PE=4 SV=... [more]
D3IVT9_9POAL1.9e-0938.32Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1[more]
D2Y4I5_9POAL2.4e-0939.42Putative polyprotein (Fragment) OS=Secale vavilovii PE=4 SV=1[more]
D2Y4C5_SECCE2.4e-0939.42Putative polyprotein (Fragment) OS=Secale cereale PE=4 SV=1[more]
BLAST of MELO3C018960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090012|ref|XP_008445785.1|9.5e-1581.48PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo][more]
gi|108709418|gb|ABF97213.1|1.2e-0937.62retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro... [more]
gi|41393222|gb|AAS01945.1|1.2e-0937.62putative polyprotein [Oryza sativa Japonica Group][more]
gi|922483679|ref|XP_013639199.1|1.6e-0939.60PREDICTED: uncharacterized protein LOC106344346 [Brassica oleracea var. oleracea... [more]
gi|729376112|ref|XP_010549207.1|2.0e-0942.05PREDICTED: uncharacterized protein LOC104820463 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018960T1MELO3C018960T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 69..88
score: 9.
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 63..92
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018960Cucumber (Chinese Long) v2cumeB303
MELO3C018960Watermelon (Charleston Gray)mewcgB456
MELO3C018960Watermelon (97103) v1mewmB494
MELO3C018960Cucurbita pepo (Zucchini)cpemeB199
MELO3C018960Cucurbita pepo (Zucchini)cpemeB421
MELO3C018960Bottle gourd (USVL1VR-Ls)lsimeB273
MELO3C018960Cucumber (Gy14) v2cgybmeB259
MELO3C018960Silver-seed gourdcarmeB0925
MELO3C018960Silver-seed gourdcarmeB0993
MELO3C018960Cucumber (Chinese Long) v3cucmeB304
MELO3C018960Watermelon (97103) v2mewmbB466
MELO3C018960Wax gourdmewgoB566
MELO3C018960Cucumber (Gy14) v1cgymeB457
MELO3C018960Cucurbita maxima (Rimu)cmameB302
MELO3C018960Cucurbita maxima (Rimu)cmameB698
MELO3C018960Cucurbita moschata (Rifu)cmomeB297
MELO3C018960Cucurbita moschata (Rifu)cmomeB690
MELO3C018960Wild cucumber (PI 183967)cpimeB298