MELO3C018958 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018958
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	chr7 : 14110862 .. 14111263 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACAAATTCATCGTTTGTGAATAGACACTGTTCGAATGATGTATTAACCCAAACATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCATAGGCGAGTTAGTGAATTAGAGGCACAGATTCGCTCAAACTTATCTACACCATTGTCTGCACAGGGGAGTTGTTCAAGGTCAATAGTGTTAAAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGCAATCCTTGGACAAACCAAAGCAGAAGGAAAAGAAAGGGAAGGAGGTGATGAAGATGAATAAACCAGAGTTGAACGTCTTGAAG

mRNA sequence

ATGAATACAAATTCATCGTTTGTGAATAGACACTGTTCGAATGATGTATTAACCCAAACATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCATAGGCGAGTTAGTGAATTAGAGGCACAGATTCGCTCAAACTTATCTACACCATTGTCTGCACAGGGGAGTTGTTCAAGGTCAATAGTGTTAAAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGCAATCCTTGGACAAACCAAAGCAGAAGGAAAAGAAAGGGAAGGAGGTGATGAAGATGAATAAACCAGAGTTGAACGTCTTGAAG

Coding sequence (CDS)

ATGAATACAAATTCATCGTTTGTGAATAGACACTGTTCGAATGATGTATTAACCCAAACATTGGGTACAAAAGAGCACAATGGTCGTGTGCGTGGGGTTGGTGGATACGTTACTCCAACAACGTACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCATAGGCGAGTTAGTGAATTAGAGGCACAGATTCGCTCAAACTTATCTACACCATTGTCTGCACAGGGGAGTTGTTCAAGGTCAATAGTGTTAAAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGCAATCCTTGGACAAACCAAAGCAGAAGGAAAAGAAAGGGAAGGAGGTGATGAAGATGAATAAACCAGAGTTGAACGTCTTGAAG

Protein sequence

MNTNSSFVNRHCSNDVLTQTLGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVENEELHRRVSELEAQIRSNLSTPLSAQGSCSRSIVLKGIEEKGKRIEVQSLDKPKQKEKKGKEVMKMNKPELNVLK

Homology

[Close]

BLAST of MELO3C018958 vs. NCBI nr
Match: gi|659109765|ref|XP_008454865.1| (PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 7.7e-22
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 1  MNTNSSFVNRHCSNDVLTQTLGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVEN 60
          MNT+SS +NR+ SNDVLTQ LGTKEHNGRVRG+G YVTP TY+HSVKKTSKDE NI++E 
Sbjct: 1  MNTDSSSMNRYYSNDVLTQALGTKEHNGRVRGIGEYVTPITYYHSVKKTSKDEVNIVLEI 60

Query: 61 EELHRRVSELEAQ 74
          EEL RR   LEAQ
Sbjct: 61 EELRRRDELLEAQ 73

[Close]

BLAST of MELO3C018958 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 46/99 (46.46%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 7   FVNRHCSNDVLTQTLGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANI---LVENEEL 66
           +V++  S + L Q LGT EH+GRVRGVGG+VT T YFH+ K + K   NI     ENE+L
Sbjct: 127 YVDKEPSPNDLAQALGTNEHSGRVRGVGGFVTRTAYFHTSKHSKKQSENIEKLREENEKL 186

Query: 67  HRRVSELEAQIRSNLSTPLSAQGSCSRSIVLKGIEEKGK 103
              V ELE+   +  STP  A  SCSR  +   I+ K K
Sbjct: 187 CLGVQELESIHLTTQSTPTYAHASCSRPRLEYDIQPKEK 225

[Close]

BLAST of MELO3C018958 vs. NCBI nr
Match: gi|764629373|ref|XP_011469428.1| (PREDICTED: uncharacterized protein LOC105352954 [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 15  DVLTQTLGTKEHNGRVRGVGGYVTPTTYFHSVKKTSKDEANILVENEELHRRVSELEAQI 74
           DVLT TLGT E++GRVRGVGG+V P +YFH + K +K     L  ++   +R+ ++ A+ 
Sbjct: 54  DVLTTTLGTPEYSGRVRGVGGFVKPESYFH-LPKCAK-----LYSDDSARQRIKKMVAEE 113

Query: 75  RSNLSTPLSAQGSCSRSIVLKGIEEKGKRIEVQSLDKPKQKEKKGKEVMKMN 127
            +N+     AQ +   +     + E+  R+E   + K KQ ++  K V  +N
Sbjct: 114 NNNILAVERAQWAEKEA----SLVERLMRLEAMLMGKDKQIDESQKSVTLLN 155

The following BLAST results are available for this feature:

BLAST of MELO3C018958 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109765\|ref\|XP_008454865.1\|	7.7e-22	75.34	PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo]	[more]
gi\|778708464\|ref\|XP_011656204.1\|	1.6e-11	46.46	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]
gi\|764629373\|ref\|XP_011469428.1\|	5.4e-07	34.82	PREDICTED: uncharacterized protein LOC105352954 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018958T1	MELO3C018958T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 53..73 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018958	Cucurbita pepo (Zucchini)	cpemeB199
MELO3C018958	Cucurbita pepo (Zucchini)	cpemeB421
MELO3C018958	Bottle gourd (USVL1VR-Ls)	lsimeB273
MELO3C018958	Cucumber (Gy14) v2	cgybmeB259
MELO3C018958	Silver-seed gourd	carmeB0925
MELO3C018958	Silver-seed gourd	carmeB0993
MELO3C018958	Cucumber (Chinese Long) v3	cucmeB304
MELO3C018958	Watermelon (97103) v2	mewmbB466
MELO3C018958	Wax gourd	mewgoB566
MELO3C018958	Cucumber (Gy14) v1	cgymeB457
MELO3C018958	Cucurbita maxima (Rimu)	cmameB302
MELO3C018958	Cucurbita maxima (Rimu)	cmameB698
MELO3C018958	Cucurbita moschata (Rifu)	cmomeB297
MELO3C018958	Cucurbita moschata (Rifu)	cmomeB690
MELO3C018958	Wild cucumber (PI 183967)	cpimeB298
MELO3C018958	Cucumber (Chinese Long) v2	cumeB303
MELO3C018958	Watermelon (Charleston Gray)	mewcgB456
MELO3C018958	Watermelon (97103) v1	mewmB494