MELO3C018923 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018923
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionIsopentenyl-diphosphate delta-isomerase
Locationchr7 : 13302248 .. 13302424 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

mRNA sequence

ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Coding sequence (CDS)

ATGGGAGATGTATCGGCAACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTGCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Protein sequence

MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF*
Homology
[Close]
BLAST of MELO3C018923 vs. TrEMBL
Match: A0A0A0LZP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-11
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

[Close]
BLAST of MELO3C018923 vs. NCBI nr
Match: gi|700210330|gb|KGN65426.1| (hypothetical protein Csa_1G420870 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILG 58
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

The following BLAST results are available for this feature:
BLAST of MELO3C018923 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZP7_CUCSA1.4e-1166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G420870 PE=4 SV=1[more]
BLAST of MELO3C018923 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210330|gb|KGN65426.1|2.1e-1166.67hypothetical protein Csa_1G420870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018923T1MELO3C018923T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018923Watermelon (97103) v2mewmbB493
MELO3C018923Wax gourdmewgoB581
MELO3C018923Cucurbita maxima (Rimu)cmameB246
MELO3C018923Cucurbita maxima (Rimu)cmameB435
MELO3C018923Cucurbita moschata (Rifu)cmomeB234
MELO3C018923Cucurbita moschata (Rifu)cmomeB426
MELO3C018923Watermelon (Charleston Gray)mewcgB487
MELO3C018923Watermelon (97103) v1mewmB515
MELO3C018923Cucurbita pepo (Zucchini)cpemeB541
MELO3C018923Cucurbita pepo (Zucchini)cpemeB590
MELO3C018923Bottle gourd (USVL1VR-Ls)lsimeB448
MELO3C018923Silver-seed gourdcarmeB0699
MELO3C018923Silver-seed gourdcarmeB0814