MELO3C018918 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018918
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transposable element protein, putative
Location	chr7 : 13175914 .. 13176421 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCTTAAAAGATATCTTGGTGAAGGATAGAATGATAAATGATTATGAAACTTTAGCTCTAATGCAAGCAACAGGCAACGTCTTTAAGAATGGGATACTGAAGAAGATGACAGATCCTGGAAGCTTTACGGTACAATGCTCAATAGGTAGGATGGACCTTAGTCGTGCACTATGCGACCTAGGAGCAAGATTAAATTTGATGCCTCTATCTTCAAGAAATTAGGGATAAAGGAGGTTCAACTGGCTCAAATGGTGATTCAATTTGCTAACAGATCCACCGCGCGACCTAAGGGCAAGATTGAAGATGTTTTGGTTATGGTGGATAAGTTCATGTTTCCTACAAACTTTATCATTTTGGACTACAAAGCTGGTCGGGAGGTACATATCATTTTGAGGTGGTCGTTTCTATCAACAGGTCGTGCCATTGTAGATGTCCACCAAAGGGAATTGACCATGTGGCTTAGTGAGCAAGAAGTCAAGTTCAACGTTGTTAACGCGATGAA

mRNA sequence

ATGAAATTCTTAAAAGATATCTTGGTGAAGGATAGAATGATAAATGATTATGAAACTTTAGCTCTAATGCAAGCAACAGGCAACGTCTTTAAGAATGGGATACTGAAGAAGATGACAGATCCTGGAAGCTTTACGGTACAATGCTCAATAGGGATAAAGGAGGTTCAACTGGCTCAAATGGTGATTCAATTTGCTAACAGATCCACCGCGCGACCTAAGGGCAAGATTGAAGATGTTTTGGTTATGGTGGATAAGTTCATGTTTCCTACAAACTTTATCATTTTGGACTACAAAGCTGGTCGGGAGGTACATATCATTTTGAGGTGGTCGTTTCTATCAACAGGTCGTGCCATTGTAGATGTCCACCAAAGGGAATTGACCATGTGGCTTAGTGAGCAAGAAGTCAAGTTCAACGTTGTTAACGCGATGAA

Coding sequence (CDS)

ATGAAATTCTTAAAAGATATCTTGGTGAAGGATAGAATGATAAATGATTATGAAACTTTAGCTCTAATGCAAGCAACAGGCAACGTCTTTAAGAATGGGATACTGAAGAAGATGACAGATCCTGGAAGCTTTACGGTACAATGCTCAATAGGGATAAAGGAGGTTCAACTGGCTCAAATGGTGATTCAATTTGCTAACAGATCCACCGCGCGACCTAAGGGCAAGATTGAAGATGTTTTGGTTATGGTGGATAAGTTCATGTTTCCTACAAACTTTATCATTTTGGACTACAAAGCTGGTCGGGAGGTACATATCATTTTGAGGTGGTCGTTTCTATCAACAGGTCGTGCCATTGTAGATGTCCACCAAAGGGAATTGACCATGTGGCTTAGTGAGCAAGAAGTCAAGTTCAACGTTGTTAACGCGATGAA

Protein sequence

MKFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIGIKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFIILDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM

Homology

[Close]

BLAST of MELO3C018918 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-29
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 1


Query: 1   MKFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG------IKE 60
           +KFLKDIL K R + ++ET+AL +    + K+ I  K+ DPGSFT+  SIG      I E
Sbjct: 76  VKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPISIGGRDKLGIGE 135

Query: 61  VQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFIILDYKAGREVHIILRWSFLST 120
            +   + +Q A+RS A P+GKIEDVLV VDKF+FP +FIILDY+  REV IIL   FL+T
Sbjct: 136 ARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPIILGRPFLAT 195

Query: 121 GRAIVDVHQRELTMWLSEQEVKFNV 140
           GR ++DV + ELTM   +++  F V
Sbjct: 196 GRTLIDVEKGELTMRAQDEQATFKV 220

[Close]

BLAST of MELO3C018918 vs. TrEMBL
Match: A0A0S3QWS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 1


Query: 2   KFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSI----------- 61
           KF+KD+L K R + D ET+ L +    + +  +  K+ DPGSF + C I           
Sbjct: 91  KFMKDLLSKKRKLQDDETIMLTEECSAIIQQKLPPKLKDPGSFVIPCEIGNITVGKALCD 150

Query: 62  ----------------GIKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFII 121
                           GI EV+   + +Q A+RS   P G +EDVLV VDKF+FPT+F++
Sbjct: 151 LGASINLMPLSIFKRLGIGEVKPTMITLQLADRSMTYPYGIVEDVLVKVDKFIFPTDFVV 210

Query: 122 LDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           LD +   +V IIL   FL+TGRA++DV Q +L + ++ ++V F++  A+
Sbjct: 211 LDMEEDAKVPIILGRPFLATGRALIDVEQGQLMLRVANEKVTFSMTEAV 259

[Close]

BLAST of MELO3C018918 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-19
Identity = 56/159 (35.22%), Postives = 87/159 (54.72%), Query Frame = 1


Query: 12  RMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSI--------------------- 71
           + + D E + L +    + +  +  K+ DPGSFT+ C+I                     
Sbjct: 322 KKLMDNEKVMLTEECSAILQRELPPKLKDPGSFTIPCTIGDFDFDKVLCDLGESVNLMPL 381

Query: 72  ------GIKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFIILDYKAGREVH 131
                 G+ EV+L  + +Q A+RS   P+G IEDVLV VDKF+FP +FI+LD +  R+V 
Sbjct: 382 SIFRKLGLGEVKLTTVCLQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVP 441

Query: 132 IILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           +IL   FL+T R ++D HQ +L + + +++V FNV  AM
Sbjct: 442 LILGRPFLATSRTLIDFHQGKLILRVQDEQVTFNVFEAM 480

[Close]

BLAST of MELO3C018918 vs. TrEMBL
Match: A0A151SWI8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014578 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-19
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 1


Query: 2   KFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG---------- 61
           +F+K++L K R I + ET+ L      + +  + +K  DPGSFT+  SIG          
Sbjct: 221 RFMKELLTKKRKILEEETVELEAGCSAIIQKSLPQKSRDPGSFTLPVSIGNLSMSKALLD 280

Query: 62  ---------------IKEVQL--AQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFII 121
                          I EVQ+   +M +Q A+RS   P G +ED++V VDKFMFP +FI+
Sbjct: 281 LGASINLIPLSMLKKIGEVQVRPTRMTLQLADRSIKLPHGIVEDMIVKVDKFMFPVDFIV 340

Query: 122 LDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           +D +   EV +IL   F+ T R I+D+ + +L + + ++EV FNV  AM
Sbjct: 341 MDMEEDVEVPLILGRPFMKTARVIIDMDEGKLKVRVQDEEVSFNVFEAM 389

[Close]

BLAST of MELO3C018918 vs. TrEMBL
Match: A0A151UCZ5_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_046633 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 1


Query: 2   KFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG---------- 61
           +F+KD+L K R I + ET+ L      + +  + +K  DPGSFT+  SIG          
Sbjct: 149 RFMKDLLTKKRRILEEETVELEAGCSAIIQKSLPQKSRDPGSFTLPVSIGNLSVGKALLD 208

Query: 62  ------------IK-----EVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFII 121
                       +K     EV+  +M +Q A+RS   P G +ED++V VDKFMFP +F++
Sbjct: 209 LGASINLMPLSMLKKIGDVEVRPTRMTLQLADRSVKFPHGIVEDMIVKVDKFMFPVDFVV 268

Query: 122 LDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           +D +   EV +IL   F+ T R I+D+   +L + + + EV FNV  AM
Sbjct: 269 MDMEEDTEVPLILGRPFMKTARVIIDMDDGKLKVRVHDDEVNFNVFEAM 317

[Close]

BLAST of MELO3C018918 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 3.1e-37
Identity = 90/169 (53.25%), Postives = 110/169 (65.09%), Query Frame = 1


Query: 2   KFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG---------- 61
           KFL DIL K R IND++T+AL QAT +++KNG+L+KMT PGSF V CSI           
Sbjct: 6   KFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCD 65

Query: 62  -----------------IKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFII 121
                            IKEVQ   M  Q A+RS   PKGKIEDVLV VDKF+F  +FII
Sbjct: 66  LGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFII 125

Query: 122 LDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           LDY+A  EV IILR  FLSTGRA+  +HQ ELT++ + +E+KFNV+NAM
Sbjct: 126 LDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAM 174

[Close]

BLAST of MELO3C018918 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-37
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 1


Query: 1   MKFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSI---------- 60
           +KFLK I  K R +N+YET+ L QAT N+FKN + KKMT P SFTV CSI          
Sbjct: 14  VKFLKYIFTKKRRMNEYETVTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLC 73

Query: 61  -----------------GIKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFI 120
                            G+ E Q  +MV+QF +RS  RP+GKI+DVL+ VDKF+F  +FI
Sbjct: 74  NLGASINLMHLSIFKKLGMWEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFI 133

Query: 121 ILDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           ILDY+A REV IIL  SFL TG A++DVHQ ELTM L++Q++ FN+VNAM
Sbjct: 134 ILDYEADREVPIILELSFLRTGHALIDVHQWELTMLLNDQKISFNIVNAM 183

[Close]

BLAST of MELO3C018918 vs. NCBI nr
Match: gi|548830390|gb|ERM93431.1| (hypothetical protein AMTR_s03373p00000010 [Amborella trichopoda])

HSP 1 Score: 135.6 bits (340), Expect = 6.9e-29
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 1


Query: 1   MKFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG------IKE 60
           +KFLKDIL K R + ++ET+AL +    + K+ I  K+ DPGSFT+  SIG      I E
Sbjct: 76  VKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPISIGGRDKLGIGE 135

Query: 61  VQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFIILDYKAGREVHIILRWSFLST 120
            +   + +Q A+RS A P+GKIEDVLV VDKF+FP +FIILDY+  REV IIL   FL+T
Sbjct: 136 ARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPIILGRPFLAT 195

Query: 121 GRAIVDVHQRELTMWLSEQEVKFNV 140
           GR ++DV + ELTM   +++  F V
Sbjct: 196 GRTLIDVEKGELTMRAQDEQATFKV 220

[Close]

BLAST of MELO3C018918 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-27
Identity = 78/156 (50.00%), Postives = 96/156 (61.54%), Query Frame = 1


Query: 15  NDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG----------------------- 74
           ND ET+AL   T ++ KNG  KKMTD  SFTV CSI                        
Sbjct: 8   NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67

Query: 75  ----IKEVQLAQMVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFIILDYKAGREVHIIL 134
               I+EVQ   M +QF +RS A+ +GKIED+LV VDKF+F  +FIILDY+A +EV II 
Sbjct: 68  KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 127

Query: 135 RWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
              FLSTG A++DVHQ ELTM  ++ EVKFNV+NAM
Sbjct: 128 GRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAM 162

[Close]

BLAST of MELO3C018918 vs. NCBI nr
Match: gi|985447976|ref|XP_015385565.1| (PREDICTED: uncharacterized protein LOC107176917 [Citrus sinensis])

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26
Identity = 70/170 (41.18%), Postives = 108/170 (63.53%), Query Frame = 1


Query: 1   MKFLKDILVKDRMINDYETLALMQATGNVFKNGILKKMTDPGSFTVQCSIG--------- 60
           +KFLKDIL + R + ++ET+AL + + ++ ++ I  K+ DPGSFT+ CSIG         
Sbjct: 5   VKFLKDILARKRRLGEFETVALTKESSHMLQSKIPTKLKDPGSFTIPCSIGTRYTGRTLC 64

Query: 61  -------------IKEVQLAQ-----MVIQFANRSTARPKGKIEDVLVMVDKFMFPTNFI 120
                         K++ + +     + +Q A+ S A P+GKIEDVLV VDKF+FP +FI
Sbjct: 65  DLGASINLMPLSVFKQLGVGECRPTTVTLQLADISHAYPQGKIEDVLVKVDKFIFPVDFI 124

Query: 121 ILDYKAGREVHIILRWSFLSTGRAIVDVHQRELTMWLSEQEVKFNVVNAM 144
           +LD++A +EV IIL   FL+T + ++DV + ELTM +++Q+V FNV+ AM
Sbjct: 125 VLDFEADKEVPIILGRHFLATRKTLIDVQKGELTMRVNDQQVTFNVLEAM 174

The following BLAST results are available for this feature:

BLAST of MELO3C018918 vs. TrEMBL


Match Name	E-value	Identity	Description
U5CWW5_AMBTC	4.8e-29	49.66	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=...	[more]
A0A0S3QWS7_PHAAN	1.7e-21	36.09	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=...	[more]
A5AZ88_VITVI	5.9e-19	35.22	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
A0A151SWI8_CAJCA	7.7e-19	35.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_014578 PE=4 SV=1	[more]
A0A151UCZ5_CAJCA	1.7e-18	34.91	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_...	[more]

BLAST of MELO3C018918 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093662\|ref\|XP_008447648.1\|	3.1e-37	53.25	PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo]	[more]
gi\|659111569\|ref\|XP_008455795.1\|	4.1e-37	51.76	PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo]	[more]
gi\|548830390\|gb\|ERM93431.1\|	6.9e-29	49.66	hypothetical protein AMTR_s03373p00000010 [Amborella trichopoda]	[more]
gi\|659130345\|ref\|XP_008465121.1\|	2.2e-27	50.00	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]
gi\|985447976\|ref\|XP_015385565.1\|	1.9e-26	41.18	PREDICTED: uncharacterized protein LOC107176917 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018918T1	MELO3C018918T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 59..123 score: 3.3
None	No IPR available	PANTHER	PTHR33067:SF2	SUBFAMILY NOT NAMED	coord: 59..123 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018918	Cucumber (Chinese Long) v3	cucmeB318
MELO3C018918	Watermelon (97103) v2	mewmbB493
MELO3C018918	Wax gourd	mewgoB581
MELO3C018918	Cucumber (Gy14) v1	cgymeB308
MELO3C018918	Cucurbita maxima (Rimu)	cmameB246
MELO3C018918	Cucurbita maxima (Rimu)	cmameB435
MELO3C018918	Cucurbita moschata (Rifu)	cmomeB234
MELO3C018918	Cucurbita moschata (Rifu)	cmomeB426
MELO3C018918	Wild cucumber (PI 183967)	cpimeB313
MELO3C018918	Cucumber (Chinese Long) v2	cumeB316
MELO3C018918	Watermelon (Charleston Gray)	mewcgB487
MELO3C018918	Watermelon (97103) v1	mewmB515
MELO3C018918	Cucurbita pepo (Zucchini)	cpemeB541
MELO3C018918	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C018918	Bottle gourd (USVL1VR-Ls)	lsimeB448
MELO3C018918	Cucumber (Gy14) v2	cgybmeB272
MELO3C018918	Silver-seed gourd	carmeB0699
MELO3C018918	Silver-seed gourd	carmeB0814