MELO3C018908 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018908
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	SMAD/FHA domain-containing protein
Location	chr7 : 12937068 .. 12937343 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTTGAAGAGGAGGGAACTCAAATTTAAAGTGGGAGACGAGGTATTCCTAAAGTTAAGACCCTATAGACAACATTCATTAGCAAAGAAGCGGTCCGAAAAATTAGCTCCTAGGTACTATGGCCCTTATCAGATCACTGAGGAAATTGGGACGATGGCATACAGACTTGACCTTCCACCAGAAGCAGTAATCCACAATGTGTTCCACATTTCCCAGCTAAAACTTAAGTTGGGAAAGCAACAAACGTGCAACATCAACAACCGATACTGA

mRNA sequence

ATGGCAGATTTGAAGAGGAGGGAACTCAAATTTAAAGTGGGAGACGAGGTATTCCTAAAGTTAAGACCCTATAGACAACATTCATTAGCAAAGAAGCGGTCCGAAAAATTAGCTCCTAGGTACTATGGCCCTTATCAGATCACTGAGGAAATTGGGACGATGGCATACAGACTTGACCTTCCACCAGAAGCAGTAATCCACAATGTGTTCCACATTTCCCAGCTAAAACTTAAGTTGGGAAAGCAACAAACGTGCAACATCAACAACCGATACTGA

Coding sequence (CDS)

ATGGCAGATTTGAAGAGGAGGGAACTCAAATTTAAAGTGGGAGACGAGGTATTCCTAAAGTTAAGACCCTATAGACAACATTCATTAGCAAAGAAGCGGTCCGAAAAATTAGCTCCTAGGTACTATGGCCCTTATCAGATCACTGAGGAAATTGGGACGATGGCATACAGACTTGACCTTCCACCAGAAGCAGTAATCCACAATGTGTTCCACATTTCCCAGCTAAAACTTAAGTTGGGAAAGCAACAAACGTGCAACATCAACAACCGATACTGA

Protein sequence

MADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLPPEAVIHNVFHISQLKLKLGKQQTCNINNRY*

Homology

[Close]

BLAST of MELO3C018908 vs. TrEMBL
Match: A0A087GAS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-21
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            AD  RRE+ F VGD VFLKLRPYRQ SLA++ +EKLA RYYGPY+I   +G +AY+L LP
Sbjct: 1264 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 1323

Query: 62   PEAVIHNVFHISQLKLKLG 81
            P A +H+ FH+SQLK  LG
Sbjct: 1324 PTAKVHHTFHVSQLKASLG 1342

[Close]

BLAST of MELO3C018908 vs. TrEMBL
Match: A0A087GAS4_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-21
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
           AD  RRE+ F VGD VFLKLRPYRQ SLA++ +EKLA RYYGPY+I   +G +AY+L LP
Sbjct: 192 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 251

Query: 62  PEAVIHNVFHISQLKLKLG 81
           P A +H+ FH+SQLK  LG
Sbjct: 252 PTAKVHHTFHVSQLKASLG 270

[Close]

BLAST of MELO3C018908 vs. TrEMBL
Match: A0A087H2T8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
           AD  RRE++FKVGD VFLKL+PYRQ SLA++ +EKLA R+YGP+++   +G ++Y+L LP
Sbjct: 838 ADSHRREVEFKVGDMVFLKLKPYRQQSLARRVNEKLAARFYGPFEVAARVGAVSYKLKLP 897

Query: 62  PEAVIHNVFHISQLKLKLG 81
           P A IH+ FHISQLKL +G
Sbjct: 898 PSAKIHHTFHISQLKLAVG 916

[Close]

BLAST of MELO3C018908 vs. TrEMBL
Match: A0A087H2T9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
           AD  RRE++FKVGD VFLKL+PYRQ SLA++ +EKLA R+YGP+++   +G ++Y+L LP
Sbjct: 580 ADSHRREVEFKVGDMVFLKLKPYRQQSLARRVNEKLAARFYGPFEVAARVGAVSYKLKLP 639

Query: 62  PEAVIHNVFHISQLKLKLG 81
           P A IH+ FHISQLKL +G
Sbjct: 640 PSAKIHHTFHISQLKLAVG 658

[Close]

BLAST of MELO3C018908 vs. TrEMBL
Match: A0A087H2U0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-20
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            AD  RRE++FKVGD VFLKL+PYRQ SLA++ +EKLA R+YGP+++   +G ++Y+L LP
Sbjct: 1213 ADSHRREVEFKVGDMVFLKLKPYRQQSLARRVNEKLAARFYGPFEVAARVGAVSYKLKLP 1272

Query: 62   PEAVIHNVFHISQLKLKLG 81
            P A IH+ FHISQLKL +G
Sbjct: 1273 PSAKIHHTFHISQLKLAVG 1291

[Close]

BLAST of MELO3C018908 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-31
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            ADLKRRELK KVG+EV+LKL+PYRQ SLA+K+SEKLAPRYYGPY+I EEIG +AYRLDLP
Sbjct: 963  ADLKRRELKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLP 1022

Query: 62   PEAVIHNVFHISQLKLKLGKQQ 84
            PEA IHNVFHISQLK KLG QQ
Sbjct: 1023 PEAAIHNVFHISQLKPKLGAQQ 1044

[Close]

BLAST of MELO3C018908 vs. NCBI nr
Match: gi|922560347|ref|XP_013608444.1| (PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea])

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 51/86 (59.30%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            AD  RRE++F VGD VFLKL+PYRQ +++++  +KLA ++YGPY++ E IG  AY+L LP
Sbjct: 1139 ADKSRREVEFSVGDMVFLKLQPYRQKTVSRRVCQKLAAKFYGPYKVIERIGKTAYKLLLP 1198

Query: 62   PEAVIHNVFHISQLKLKLGKQQTCNI 88
            PEA IH VFHISQLKL LG Q+ C++
Sbjct: 1199 PEARIHVVFHISQLKLALGPQEQCSL 1224

[Close]

BLAST of MELO3C018908 vs. NCBI nr
Match: gi|674234211|gb|KFK26976.1| (hypothetical protein AALP_AA8G317800 [Arabis alpina])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
           AD  RRE+ F VGD VFLKLRPYRQ SLA++ +EKLA RYYGPY+I   +G +AY+L LP
Sbjct: 192 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 251

Query: 62  PEAVIHNVFHISQLKLKLG 81
           P A +H+ FH+SQLK  LG
Sbjct: 252 PTAKVHHTFHVSQLKASLG 270

[Close]

BLAST of MELO3C018908 vs. NCBI nr
Match: gi|674234210|gb|KFK26975.1| (hypothetical protein AALP_AA8G317800 [Arabis alpina])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            AD  RRE+ F VGD VFLKLRPYRQ SLA++ +EKLA RYYGPY+I   +G +AY+L LP
Sbjct: 1264 ADSHRREVNFAVGDLVFLKLRPYRQKSLARRPNEKLAARYYGPYEIEARVGPVAYKLKLP 1323

Query: 62   PEAVIHNVFHISQLKLKLG 81
            P A +H+ FH+SQLK  LG
Sbjct: 1324 PTAKVHHTFHVSQLKASLG 1342

[Close]

BLAST of MELO3C018908 vs. NCBI nr
Match: gi|923923198|ref|XP_013730756.1| (PREDICTED: uncharacterized protein LOC106434427 [Brassica napus])

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 47/81 (58.02%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVFLKLRPYRQHSLAKKRSEKLAPRYYGPYQITEEIGTMAYRLDLP 61
            AD  RRE++F VGD V+LKL+PYRQ S+ K+ ++KLA +++GPY++ E +G +AY+L+LP
Sbjct: 1441 ADKSRREVEFVVGDMVYLKLQPYRQKSVVKRFNQKLAAKFFGPYKVIERVGKVAYKLELP 1500

Query: 62   PEAVIHNVFHISQLKLKLGKQ 83
            PEA IH VFH+SQLKL +G+Q
Sbjct: 1501 PEARIHTVFHVSQLKLAVGQQ 1521

The following BLAST results are available for this feature:

BLAST of MELO3C018908 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A087GAS3_ARAAL	9.1e-21	63.29	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A0A087GAS4_ARAAL	9.1e-21	63.29	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G317800 PE=4 SV=1	[more]
A0A087H2T8_ARAAL	1.2e-20	60.76	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2T9_ARAAL	1.2e-20	60.76	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]
A0A087H2U0_ARAAL	1.2e-20	60.76	Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124900 PE=4 SV=1	[more]

BLAST of MELO3C018908 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	4.8e-31	82.93	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|922560347\|ref\|XP_013608444.1\|	2.6e-21	59.30	PREDICTED: uncharacterized protein LOC106315243 [Brassica oleracea var. oleracea...	[more]
gi\|674234211\|gb\|KFK26976.1\|	1.3e-20	63.29	hypothetical protein AALP_AA8G317800 [Arabis alpina]	[more]
gi\|674234210\|gb\|KFK26975.1\|	1.3e-20	63.29	hypothetical protein AALP_AA8G317800 [Arabis alpina]	[more]
gi\|923923198\|ref\|XP_013730756.1\|	1.7e-20	58.02	PREDICTED: uncharacterized protein LOC106434427 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000253	FHA_dom
IPR008984	SMAD_FHA_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018908T1	MELO3C018908T1	mRNA
MELO3C018908T2	MELO3C018908T2	mRNA
MELO3C018908T3	MELO3C018908T3	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000253	Forkhead-associated (FHA) domain	GENE3D	G3DSA:2.60.200.20		coord: 113..174 score: 1.7
IPR000253	Forkhead-associated (FHA) domain	PFAM	PF00498	FHA	coord: 144..180 score: 2.
IPR000253	Forkhead-associated (FHA) domain	PROFILE	PS50006	FHA_DOMAIN	coord: 144..187 score: 9
IPR008984	SMAD/FHA domain	unknown	SSF49879	SMAD/FHA domain	coord: 100..169 score: 5.74
None	No IPR available	PANTHER	PTHR23308	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	coord: 16..166 score: 5.7
None	No IPR available	PANTHER	PTHR23308:SF2	KANADAPTIN	coord: 16..166 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018908	Silver-seed gourd	carmeB0699
MELO3C018908	Silver-seed gourd	carmeB0814
MELO3C018908	Cucumber (Chinese Long) v3	cucmeB085
MELO3C018908	Cucumber (Chinese Long) v3	cucmeB318
MELO3C018908	Watermelon (97103) v2	mewmbB493
MELO3C018908	Wax gourd	mewgoB581
MELO3C018908	Cucumber (Gy14) v1	cgymeB163
MELO3C018908	Cucumber (Gy14) v1	cgymeB308
MELO3C018908	Cucurbita maxima (Rimu)	cmameB246
MELO3C018908	Cucurbita maxima (Rimu)	cmameB435
MELO3C018908	Cucurbita moschata (Rifu)	cmomeB234
MELO3C018908	Cucurbita moschata (Rifu)	cmomeB426
MELO3C018908	Wild cucumber (PI 183967)	cpimeB081
MELO3C018908	Wild cucumber (PI 183967)	cpimeB313
MELO3C018908	Cucumber (Chinese Long) v2	cumeB316
MELO3C018908	Watermelon (Charleston Gray)	mewcgB487
MELO3C018908	Watermelon (97103) v1	mewmB515
MELO3C018908	Cucurbita pepo (Zucchini)	cpemeB541
MELO3C018908	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C018908	Bottle gourd (USVL1VR-Ls)	lsimeB448
MELO3C018908	Cucumber (Gy14) v2	cgybmeB071
MELO3C018908	Cucumber (Gy14) v2	cgybmeB272