MELO3C018901 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018901
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative
Location	chr7 : 12728263 .. 12728415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAATGTTGCACCATTGGAAACATTGGTGATGGATGAAGCTGTACAGTTGAAGGAGTGTGAGTCTGCAATTCCTTTGCAATTTCCTGCTATAAAGCATGCAATTCTTTTTGGTGATGAGTGCGAATTGCCTGCCATGGTTGAAAGCAAA

mRNA sequence

ATGCGAAATGTTGCACCATTGGAAACATTGGTGATGGATGAAGCTGTACAGTTGAAGGAGTGTGAGTCTGCAATTCCTTTGCAATTTCCTGCTATAAAGCATGCAATTCTTTTTGGTGATGAGTGCGAATTGCCTGCCATGGTTGAAAGCAAA

Coding sequence (CDS)

ATGCGAAATGTTGCACCATTGGAAACATTGGTGATGGATGAAGCTGTACAGTTGAAGGAGTGTGAGTCTGCAATTCCTTTGCAATTTCCTGCTATAAAGCATGCAATTCTTTTTGGTGATGAGTGCGAATTGCCTGCCATGGTTGAAAGCAAA

Protein sequence

MRNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK

Homology

[Close]

BLAST of MELO3C018901 vs. TrEMBL
Match: A0A0A0K415_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291110 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1   MRNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           MRNVAPLETLVMDEA QLKECESAIPLQFPAIKHAIL GDEC+LPAMVESK
Sbjct: 572 MRNVAPLETLVMDEAAQLKECESAIPLQFPAIKHAILIGDECQLPAMVESK 622

[Close]

BLAST of MELO3C018901 vs. TrEMBL
Match: F6HG18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01850 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-12
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 3    NVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
            N+ PL+ LV+DEA QLKECES IPLQ P I+HAIL GDEC+LPAMV SK
Sbjct: 2788 NMKPLDLLVIDEAAQLKECESVIPLQLPDIRHAILIGDECQLPAMVSSK 2836

[Close]

BLAST of MELO3C018901 vs. TrEMBL
Match: F6HG18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01850 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-07
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 3    NVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVES 51
            ++ PL  LV+DEA QL+ECES IPLQ P IK AIL GD+ +LP+ V S
Sbjct: 1640 DMKPLNILVIDEAAQLRECESTIPLQLPGIKLAILIGDKFQLPSRVTS 1687

HSP 2 Score: 73.6 bits (179), Expect = 8.0e-11
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           LE LV+DEA QLKECE  IPL+FPA+KHAIL GDEC+LPA ++SK
Sbjct: 912 LELLVVDEAAQLKECEGLIPLRFPALKHAILIGDECQLPATIKSK 956

[Close]

BLAST of MELO3C018901 vs. TrEMBL
Match: A0A0D9W8L0_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.9e-10
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 7    LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
            LE LV+DEA QLKECE  IPL+ P +KHAIL GDEC+LPA V+SK
Sbjct: 1684 LELLVVDEAAQLKECEGLIPLRLPTLKHAILIGDECQLPATVKSK 1728

HSP 2 Score: 63.5 bits (153), Expect = 8.3e-08
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           ++ L++DEA QLKECES IPLQ   +KHA+L GD C+LPA V+SK
Sbjct: 122 MDLLLIDEAAQLKECESLIPLQVSGLKHAVLIGDVCQLPATVKSK 166

HSP 3 Score: 62.8 bits (151), Expect = 1.4e-07
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1


Query: 7    LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
            LE LV+DEA QLKECE+ IPLQ P I  AI  GDE +LPA+V+SK
Sbjct: 2525 LELLVVDEAAQLKECETLIPLQLPGITQAIFIGDEYQLPALVKSK 2569

HSP 4 Score: 73.6 bits (179), Expect = 8.0e-11
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           LE LV+DEA QLKECE  IPL+FPA+KHAIL GDEC+LPA ++SK
Sbjct: 541 LELLVVDEAAQLKECEGLIPLRFPALKHAILIGDECQLPATIKSK 585

[Close]

BLAST of MELO3C018901 vs. TrEMBL
Match: A0A0D9W8L2_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.9e-10
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 7    LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
            LE LV+DEA QLKECE  IPL+ P +KHAIL GDEC+LPA V+SK
Sbjct: 1313 LELLVVDEAAQLKECEGLIPLRLPTLKHAILIGDECQLPATVKSK 1357

HSP 2 Score: 62.8 bits (151), Expect = 1.4e-07
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1


Query: 7    LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
            LE LV+DEA QLKECE+ IPLQ P I  AI  GDE +LPA+V+SK
Sbjct: 2154 LELLVVDEAAQLKECETLIPLQLPGITQAIFIGDEYQLPALVKSK 2198

HSP 3 Score: 73.6 bits (179), Expect = 8.0e-11
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           LE LV+DEA QLKECE  IPL+FPA+KHAIL GDEC+LPA ++SK
Sbjct: 541 LELLVVDEAAQLKECEGLIPLRFPALKHAILIGDECQLPATIKSK 585

[Close]

BLAST of MELO3C018901 vs. TAIR10
Match: AT1G65780.1 (AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 6   PLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           P++ LV+DEA QLKECES+IP+Q P ++H IL GDE +LPAMVES+
Sbjct: 563 PIQLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQ 608

[Close]

BLAST of MELO3C018901 vs. TAIR10
Match: AT1G65810.1 (AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 5   APLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVES 51
           +P++ LV+DEA QLKECESAIPLQ   ++HAIL GDE +LPAM++S
Sbjct: 551 SPIQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAMIKS 596

[Close]

BLAST of MELO3C018901 vs. TAIR10
Match: AT5G37030.1 (AT5G37030.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVES 51
           +E LV+DEA QLKECES   LQ P ++HAIL GDE +LPAMV +
Sbjct: 348 IEVLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHN 391

[Close]

BLAST of MELO3C018901 vs. TAIR10
Match: AT5G52090.1 (AT5G52090.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-10
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           +E LV+DEA QLKECES   LQ P ++HAIL GDE +LPAMV ++
Sbjct: 364 VELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNE 408

[Close]

BLAST of MELO3C018901 vs. TAIR10
Match: AT5G37150.1 (AT5G37150.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-10
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1


Query: 7   LETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           +E LV+DEA QLKECES   LQ P ++HAIL GDE +LPAMV ++
Sbjct: 527 VELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQLPAMVHNE 571

[Close]

BLAST of MELO3C018901 vs. NCBI nr
Match: gi|449443986|ref|XP_004139756.1| (PREDICTED: uncharacterized protein LOC101214715 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1   MRNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           MRNVAPLETLVMDEA QLKECESAIPLQFPAIKHAIL GDEC+LPAMVESK
Sbjct: 382 MRNVAPLETLVMDEAAQLKECESAIPLQFPAIKHAILIGDECQLPAMVESK 432

[Close]

BLAST of MELO3C018901 vs. NCBI nr
Match: gi|700189207|gb|KGN44440.1| (hypothetical protein Csa_7G291110 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1   MRNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           MRNVAPLETLVMDEA QLKECESAIPLQFPAIKHAIL GDEC+LPAMVESK
Sbjct: 572 MRNVAPLETLVMDEAAQLKECESAIPLQFPAIKHAILIGDECQLPAMVESK 622

[Close]

BLAST of MELO3C018901 vs. NCBI nr
Match: gi|659123169|ref|XP_008461528.1| (PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1   MRNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           MRNVAPLETLVMDEA QLKECESAIPLQFPAIKHAIL GDEC+LPAMVESK
Sbjct: 480 MRNVAPLETLVMDEAAQLKECESAIPLQFPAIKHAILIGDECQLPAMVESK 530

[Close]

BLAST of MELO3C018901 vs. NCBI nr
Match: gi|778730286|ref|XP_011659750.1| (PREDICTED: regulator of nonsense transcripts 1 homolog [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 2   RNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           R +APLETLV+DEA QLKECE+AIPLQFP+IKHAIL GDEC+LPAMVESK
Sbjct: 517 RTMAPLETLVIDEAAQLKECEAAIPLQFPSIKHAILIGDECQLPAMVESK 566

[Close]

BLAST of MELO3C018901 vs. NCBI nr
Match: gi|700189149|gb|KGN44382.1| (hypothetical protein Csa_7G276680 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 2   RNVAPLETLVMDEAVQLKECESAIPLQFPAIKHAILFGDECELPAMVESK 52
           R +APLETLV+DEA QLKECE+AIPLQFP+IKHAIL GDEC+LPAMVESK
Sbjct: 517 RTMAPLETLVIDEAAQLKECEAAIPLQFPSIKHAILIGDECQLPAMVESK 566

The following BLAST results are available for this feature:

BLAST of MELO3C018901 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K415_CUCSA	1.4e-18	94.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291110 PE=4 SV=1	[more]
F6HG18_VITVI	3.3e-12	73.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01850 PE=4 SV=...	[more]
F6HG18_VITVI	7.0e-07	60.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01850 PE=4 SV=...	[more]
A0A0D9W8L0_9ORYZ	8.9e-10	71.11	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A0D9W8L2_9ORYZ	8.9e-10	71.11	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of MELO3C018901 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65780.1	1.7e-12	65.22	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G65810.1	5.0e-12	65.22	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT5G37030.1	1.6e-10	63.64	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT5G52090.1	2.1e-10	62.22	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT5G37150.1	2.1e-10	62.22	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of MELO3C018901 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443986\|ref\|XP_004139756.1\|	2.0e-18	94.12	PREDICTED: uncharacterized protein LOC101214715 [Cucumis sativus]	[more]
gi\|700189207\|gb\|KGN44440.1\|	2.0e-18	94.12	hypothetical protein Csa_7G291110 [Cucumis sativus]	[more]
gi\|659123169\|ref\|XP_008461528.1\|	2.0e-18	94.12	PREDICTED: uncharacterized protein LOC103500100 [Cucumis melo]	[more]
gi\|778730286\|ref\|XP_011659750.1\|	1.2e-15	84.00	PREDICTED: regulator of nonsense transcripts 1 homolog [Cucumis sativus]	[more]
gi\|700189149\|gb\|KGN44382.1\|	1.2e-15	84.00	hypothetical protein Csa_7G276680 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44403	melon EST collection version 4.0	transcribed_cluster
MU51582	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018901T1	MELO3C018901T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44403	MU44403	transcribed_cluster
MU51582	MU51582	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 6..50 score: 8.
None	No IPR available	PANTHER	PTHR10887	DNA2/NAM7 HELICASE FAMILY	coord: 5..51 score: 6.4
None	No IPR available	PANTHER	PTHR10887:SF358	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	coord: 5..51 score: 6.4
None	No IPR available	PFAM	PF13086	AAA_11	coord: 2..51 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018901	Cucumber (Gy14) v2	cgybmeB071
MELO3C018901	Cucumber (Gy14) v2	cgybmeB272
MELO3C018901	Silver-seed gourd	carmeB0699
MELO3C018901	Silver-seed gourd	carmeB0814
MELO3C018901	Cucumber (Chinese Long) v3	cucmeB085
MELO3C018901	Cucumber (Chinese Long) v3	cucmeB318
MELO3C018901	Watermelon (97103) v2	mewmbB493
MELO3C018901	Wax gourd	mewgoB581
MELO3C018901	Cucumber (Gy14) v1	cgymeB163
MELO3C018901	Cucumber (Gy14) v1	cgymeB308
MELO3C018901	Cucurbita maxima (Rimu)	cmameB246
MELO3C018901	Cucurbita maxima (Rimu)	cmameB435
MELO3C018901	Cucurbita moschata (Rifu)	cmomeB234
MELO3C018901	Cucurbita moschata (Rifu)	cmomeB426
MELO3C018901	Wild cucumber (PI 183967)	cpimeB081
MELO3C018901	Wild cucumber (PI 183967)	cpimeB313
MELO3C018901	Cucumber (Chinese Long) v2	cumeB316
MELO3C018901	Watermelon (Charleston Gray)	mewcgB487
MELO3C018901	Watermelon (97103) v1	mewmB515
MELO3C018901	Cucurbita pepo (Zucchini)	cpemeB541
MELO3C018901	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C018901	Bottle gourd (USVL1VR-Ls)	lsimeB448