MELO3C018618 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018618
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription elongation factor SPT5
Location	chr1 : 1533071 .. 1533574 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCGAATCCAAACAGAAATCAAATCTTCTCATCTTCTTCTTCTTCTTCTCTTAAATTTTCCTCTCCCTTACAGATTCCCAAAATCTTTCTCTAACAATCCAATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCCGAAGTCTCCGGCGCCCGCACCTTCTCCGGCCGTTGTCGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAGAATCTTTTGCTTCTTAATTAATTTTGGTTTTTGTTTATGATGGAATTTAGTTATTTGTTTTATCACATTCATTTGATTTTATTGGTTTATATCACATTCGAATTATGATCATCAGATTTATTTTGGTTGTGTTCAATTT

mRNA sequence

CTCATCGAATCCAAACAGAAATCAAATCTTCTCATCTTCTTCTTCTTCTTCTCTTAAATTTTCCTCTCCCTTACAGATTCCCAAAATCTTTCTCTAACAATCCAATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCCGAAGTCTCCGGCGCCCGCACCTTCTCCGGCCGTTGTCGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAGAATCTTTTGCTTCTTAATTAATTTTGGTTTTTGTTTATGATGGAATTTAGTTATTTGTTTTATCACATTCATTTGATTTTATTGGTTTATATCACATTCGAATTATGATCATCAGATTTATTTTGGTTGTGTTCAATTT

Coding sequence (CDS)

ATGGCTTCAAGAAGCTTCCTTGTTCTTCTTCTAGTGCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCATCATTCACACCCGAAGTCTCCGGCGCCCGCACCTTCTCCGGCCGTTGTCGAAGCTCCGTCGGTTCCGCCGTCTTCGATTTCCGGAACTCCTGTTGAGGCGCCTGCACCGGCAGCAAGCGGCGCTGGCTTTGTTTCTGGATCAATGGCTGTTAGTGTTGGAATCTTTGCTGCTGCATTGTTCGTTTAG

Protein sequence

MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPAASGAGFVSGSMAVSVGIFAAALFV*

Homology

[Close]

BLAST of MELO3C018618 vs. TrEMBL
Match: A0A0A0K427_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-36
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFVSGSMAVSVGI-FAAALFV 87
          PAA+GAG VSGSMAVSVGI FAAALFV
Sbjct: 61 PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of MELO3C018618 vs. NCBI nr
Match: gi|659110322|ref|XP_008455166.1| (PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFVSGSMAVSVGIFAAALFV 87
          PAASGAGFVSGSMAVSVGIFAAALFV
Sbjct: 61 PAASGAGFVSGSMAVSVGIFAAALFV 86

[Close]

BLAST of MELO3C018618 vs. NCBI nr
Match: gi|700188511|gb|KGN43744.1| (hypothetical protein Csa_7G064050 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-36
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60
          MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFVSGSMAVSVGI-FAAALFV 87
          PAA+GAG VSGSMAVSVGI FAAALFV
Sbjct: 61 PAANGAGLVSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of MELO3C018618 vs. NCBI nr
Match: gi|645263560|ref|XP_008237293.1| (PREDICTED: classical arabinogalactan protein 1-like [Prunus mume])

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 14  ALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPAASGAGF--VSG 73
           A +++  +A    S      P+P  A  E+P++PPSS+SG P EAPAPA +GAG    S 
Sbjct: 55  APLSTPPSAAPSQSPAAGSPPSPPSASPESPAIPPSSVSGPPSEAPAPATNGAGLNRFSA 114

Query: 74  SMAVSVGIFAAAL 85
           + +V+VG+FAA L
Sbjct: 115 AGSVAVGVFAAVL 127

The following BLAST results are available for this feature:

BLAST of MELO3C018618 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427_CUCSA	3.2e-36	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1	[more]

BLAST of MELO3C018618 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110322\|ref\|XP_008455166.1\|	1.7e-38	100.00	PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo]	[more]
gi\|700188511\|gb\|KGN43744.1\|	4.7e-36	96.55	hypothetical protein Csa_7G064050 [Cucumis sativus]	[more]
gi\|645263560\|ref\|XP_008237293.1\|	2.3e-06	43.84	PREDICTED: classical arabinogalactan protein 1-like [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54512	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018618T1	MELO3C018618T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54512	MU54512	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018618	CsaV3_7G006760	Cucumber (Chinese Long) v3	cucmeB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018618	Cucurbita moschata (Rifu)	cmomeB085
MELO3C018618	Cucurbita moschata (Rifu)	cmomeB454
MELO3C018618	Wild cucumber (PI 183967)	cpimeB538
MELO3C018618	Cucumber (Chinese Long) v2	cumeB530
MELO3C018618	Watermelon (Charleston Gray)	mewcgB176
MELO3C018618	Watermelon (97103) v1	mewmB207
MELO3C018618	Cucurbita pepo (Zucchini)	cpemeB604
MELO3C018618	Bottle gourd (USVL1VR-Ls)	lsimeB247
MELO3C018618	Cucumber (Gy14) v2	cgybmeB468
MELO3C018618	Silver-seed gourd	carmeB0289
MELO3C018618	Watermelon (97103) v2	mewmbB224
MELO3C018618	Wax gourd	mewgoB220
MELO3C018618	Cucumber (Gy14) v1	cgymeB379
MELO3C018618	Cucurbita maxima (Rimu)	cmameB098
MELO3C018618	Cucurbita maxima (Rimu)	cmameB463