MELO3C018307 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018307
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProbable mannan endo-1,4-beta-mannosidase F
Locationchr10 : 19616907 .. 19617419 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGGTTGGAACGATGAATTCAAGTGCATCATCGCTAAGAAGGAATTGTTTGACAATTGGGTGAAGGTACGCTTTTCATTCTATCAACCGTTATTCGTTTATAATCGTAATTTAAAAATATTGTTAATTTGTTGAAACATTTGCACAGGGTCATCCTACTGCTAAGGGCTTCCTAAGAAATCCTTTCCCCATTACGACTTGTCCTACGTATTTGGAAAGATCATGCTACAGGAGCACACGTAGAGAGTCAGAGACATTCGCCCATGTGAGGTCAAATGTGTTAGGAGGGTACGAGGGATTTCTCGTTGACGATGGGAACGATTTGGAGACCCCTATGGTGTATGGTCAGGGACTAGACAAGTCACATGACGACATCATGGGTACACGACCTGGTCGCTTAAGTGAGGTAGGAATGCTTCAAGCGGAAGCAAGAGGAAGTGAGAAGGTCATACGGCTGAAACCATTGACATCATTCGCAATGCAATGGAATTTGCGAATGGCAAGTTGA

mRNA sequence

ATGGGTTTGGGTCATCCTACTGCTAAGGGCTTCCTAAGAAATCCTTTCCCCATTACGACTTGTCCTACGTATTTGGAAAGATCATGCTACAGGAGCACACGTAGAGAGTCAGAGACATTCGCCCATGTGAGGTCAAATGTGTTAGGAGGGTACGAGGGATTTCTCGTTGACGATGGGAACGATTTGGAGACCCCTATGGTGTATGGTCAGGGACTAGACAAGTCACATGACGACATCATGGGTACACGACCTGGTCGCTTAAGTGAGGTAGGAATGCTTCAAGCGGAAGCAAGAGGAAGTGAGAAGGTCATACGGCTGAAACCATTGACATCATTCGCAATGCAATGGAATTTGCGAATGGCAAGTTGA

Coding sequence (CDS)

ATGGGTTTGGGTCATCCTACTGCTAAGGGCTTCCTAAGAAATCCTTTCCCCATTACGACTTGTCCTACGTATTTGGAAAGATCATGCTACAGGAGCACACGTAGAGAGTCAGAGACATTCGCCCATGTGAGGTCAAATGTGTTAGGAGGGTACGAGGGATTTCTCGTTGACGATGGGAACGATTTGGAGACCCCTATGGTGTATGGTCAGGGACTAGACAAGTCACATGACGACATCATGGGTACACGACCTGGTCGCTTAAGTGAGGTAGGAATGCTTCAAGCGGAAGCAAGAGGAAGTGAGAAGGTCATACGGCTGAAACCATTGACATCATTCGCAATGCAATGGAATTTGCGAATGGCAAGTTGA

Protein sequence

MGLGHPTAKGFLRNPFPITTCPTYLERSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLETPMVYGQGLDKSHDDIMGTRPGRLSEVGMLQAEARGSEKVIRLKPLTSFAMQWNLRMAS*
Homology
[Close]
BLAST of MELO3C018307 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 6   PTAKGFLRNPFPITTCPTYLERSCYRSTRRESETFAHVRSNVL-GGYEGFLVDDGNDLET 65
           P AKG L NPFP     TY+     R+T R +ETFA V SN   GGY+ F + DGN+ + 
Sbjct: 433 PAAKGLLNNPFPYYDELTYVFGRD-RATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DF 492

Query: 66  PMVYGQGLDKSHDDIMGTRPGRLSE 90
           P VY +G+D   DD+  +RP R SE
Sbjct: 493 PPVYSRGVDILQDDVRASRPSRASE 515

[Close]
BLAST of MELO3C018307 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 27 RSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLETPMVYGQGLDKSHDDIMGTR 84
          R C R TR    ++  V SNVLGGYEGF  DDGND+E P +Y Q LD S D+IM TR
Sbjct: 25 RICKRQTRISVHSY-RVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR 80

[Close]
BLAST of MELO3C018307 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 34/85 (40.00%), Postives = 44/85 (51.76%), Query Frame = 1 

Query: 5   HPTAKGFLRNPFPITTCPTYLERSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLET 64
           HP AK  L   FP      Y+ +   R+T R  ETF  + SN    YEGF   DGND+E 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKD-RATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEI 91

Query: 65  PMVYGQGLDKSHDDIMGTRPGRLSE 90
           P +Y QG + S +D+   RP   S+
Sbjct: 92  PTIYSQGFNMSQEDVWAPRPSSASD 115

[Close]
BLAST of MELO3C018307 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 

Query: 6   PTAKGFLRNPFPITTCPTYLERSCYRSTRRESETFAHVRSNVL-GGYEGFLVDDGNDLET 65
           P AKG L NPFP     TY+     R+T R +ETFA V SN   GGY+ F + DGN+ + 
Sbjct: 433 PAAKGLLNNPFPYYDELTYVFGRD-RATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DF 492

Query: 66  PMVYGQGLDKSHDDIMGTRPGRLSE 90
           P VY +G+D   DD+  +RP R SE
Sbjct: 493 PPVYSRGVDILQDDVRASRPSRASE 515

[Close]
BLAST of MELO3C018307 vs. NCBI nr
Match: gi|700200446|gb|KGN55579.1| (hypothetical protein Csa_3G000030 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 27 RSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLETPMVYGQGLDKSHDDIMGTR 84
          R C R TR    ++  V SNVLGGYEGF  DDGND+E P +Y Q LD S D+IM TR
Sbjct: 25 RICKRQTRISVHSY-RVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR 80

[Close]
BLAST of MELO3C018307 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-07
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 25  LERSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLETPMVYGQGLDKSHDDIMGTRP 84
           +ERS Y    R +ETF  V SNV   Y+GF  +DGN++E P +Y QGL+ S +DIM TRP
Sbjct: 167 MERSRYG---RCTETFIDVGSNVSDEYKGFPTEDGNNMEIPTMYCQGLNMSPEDIMDTRP 226

Query: 85  GRLSE--VGMLQAEARGSEKVIRLKPLTSFAMQW 117
            R SE   G  +++ +   + +    +T  AM++
Sbjct: 227 SRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEY 257

[Close]
BLAST of MELO3C018307 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 5   HPTAKGFLRNPFPITTCPTYLERSCYRSTRRESETFAHVRSNVLGGYEGFLVDDGNDLET 64
           HP AKG L   FP      Y+     R+T   +++FA V SN   GY+ F+ D   D + 
Sbjct: 288 HPVAKGLLNKSFPHYDERLYVFGKD-RATGGRAKSFADVGSNNPVGYDAFVADATPDTDF 347

Query: 65  PMVYGQGLDKSHDDIMGTRPGRLSE 90
           P +Y QGL+ S DD+MGTR  R+SE
Sbjct: 348 PPMYSQGLNMSPDDLMGTRITRVSE 371

The following BLAST results are available for this feature:
BLAST of MELO3C018307 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME2.0e-0747.06Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L3I2_CUCSA3.4e-0757.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1[more]
BLAST of MELO3C018307 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068476|ref|XP_008444620.1|2.2e-0740.00PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|2.9e-0747.06retrotransposon protein [Cucumis melo subsp. melo][more]
gi|700200446|gb|KGN55579.1|4.9e-0757.89hypothetical protein Csa_3G000030 [Cucumis sativus][more]
gi|778708415|ref|XP_004148199.2|4.9e-0740.43PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|659111306|ref|XP_008455685.1|2.4e-0642.35PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018307T1MELO3C018307T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018307Silver-seed gourdcarmeB0183
MELO3C018307Silver-seed gourdcarmeB0662
MELO3C018307Cucumber (Chinese Long) v3cucmeB374
MELO3C018307Watermelon (97103) v2mewmbB067
MELO3C018307Wax gourdmewgoB085
MELO3C018307Cucurbita maxima (Rimu)cmameB659
MELO3C018307Cucurbita maxima (Rimu)cmameB660
MELO3C018307Cucurbita moschata (Rifu)cmomeB651
MELO3C018307Cucurbita moschata (Rifu)cmomeB653
MELO3C018307Watermelon (Charleston Gray)mewcgB068
MELO3C018307Watermelon (97103) v1mewmB059
MELO3C018307Watermelon (97103) v1mewmB060
MELO3C018307Cucurbita pepo (Zucchini)cpemeB383
MELO3C018307Cucurbita pepo (Zucchini)cpemeB384
MELO3C018307Bottle gourd (USVL1VR-Ls)lsimeB284
MELO3C018307Cucumber (Gy14) v2cgybmeB314