MELO3C018304.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C018304.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionACT11D09.5
Locationchr10 : 20449443 .. 20449850 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

mRNA sequence

ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

Coding sequence (CDS)

ATGGAGTTTGCTATTATGTACAACCAAGGAATGAACGTGTCGCCCGAAGACATGATGGGCGCACGACCTGGTAGGTATAACGACTGTAGGCTAAGTTCCAGTGGATCGAAGAGGAAGCATAGAGGGTGGACTATCATGACTGTGAATGTCATTCACGAAGCCATAGACTGTACGAATGACTTGCTCAGAGCCATTGCAGAATGGCTGAAGATAACTAGGCATGAGGAAGATGCTATACGGCGGGAAGTCATTAGACAGTTGCAGGTTATCCCTCAACTAAGTGTATTGGACAGTGTGCAATGTATGATGCTAATGATACAAAAGCTAACCATCATAAAAGCCTTCCTGGACCTATCCGACGATATAAAGCTCGCATACTGCAACACCATTTTGCACAATAACCCGTGA

Protein sequence

MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLAYCNTILHNNP
Homology
[Close]
BLAST of MELO3C018304.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 49/133 (36.84%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 2   EFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDL 61
           +F  MY+ G+N+SP+D+M  R  R ++ R  SSGSKRK  G    + +++  AI+  N+ 
Sbjct: 524 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 583

Query: 62  LRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
           L  IAEW  + R +    R+E++R L+ IP+L+++D  + M ++++ +  +KAFL++ D 
Sbjct: 584 LHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDH 643

Query: 122 IKLAYCNTILHNN 135
           +K  YC+ IL  N
Sbjct: 644 MKYPYCSLILQEN 656

[Close]
BLAST of MELO3C018304.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+++SP++M G R G+ ++ R  SS SKRK       TV VI   ++  N+ L+AI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A+W K  R  E  +R +V++QLQ IP+L   D  + M ++ + L  I+ FL +  ++KL 
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 126 YCNTILHN 134
           YCN +L N
Sbjct: 297 YCNILLQN 304

[Close]
BLAST of MELO3C018304.2 vs. NCBI nr
Match: KGN46631.1 (hypothetical protein Csa_6G116150 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+++ P++M+G R  + ++ R  SSGSKRKH G     V+VI   ++  ND L+AI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A W K  R  E  +  EV++QLQ I +L   D V+ M ++   +  I+ FL     +KL 
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 126 YCNTILHNN 135
           YC  +L +N
Sbjct: 121 YCRVLLEDN 127

[Close]
BLAST of MELO3C018304.2 vs. NCBI nr
Match: XP_004148199.2 (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-13
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0 

Query: 1   MEFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTND 60
           ME   MY QG+N+SPED+M  RP R ++CR  SS SKRK RG  + T+ V   A++  ND
Sbjct: 201 MEIPTMYCQGLNMSPEDIMDTRPSRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEYAND 260

Query: 61  LLRAIAEWLKITRHEEDAIRREVIR 86
            L+AIAE   + R +E A R +V+R
Sbjct: 261 QLKAIAECQNLARQDESATRSKVVR 285

[Close]
BLAST of MELO3C018304.2 vs. NCBI nr
Match: KGN58436.1 (hypothetical protein Csa_3G643760 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 0 

Query: 32  SSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLKITRHEEDAIRREVIRQLQVIP 91
           +SS SKRK  G T  T+ +I   +   ND   AI EW  +    +DA   EV++QLQ IP
Sbjct: 3   ASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIP 62

Query: 92  QLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLAYCNTILHNN 135
           +LS  D    M  ++  +  +KA  ++S+++KL YC  +L +N
Sbjct: 63  ELSTHDRRCLMWTLMCNVHDMKALWEISNELKLDYCTVMLEDN 105

[Close]
BLAST of MELO3C018304.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 49/133 (36.84%), Postives = 84/133 (63.16%), Query Frame = 0 

Query: 2   EFAIMYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDL 61
           +F  MY+ G+N+SP+D+M  R  R ++ R  SSGSKRK  G    + +++  AI+  N+ 
Sbjct: 524 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 583

Query: 62  LRAIAEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDD 121
           L  IAEW  + R +    R+E++R L+ IP+L+++D  + M ++++ +  +KAFL++ D 
Sbjct: 584 LHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDH 643

Query: 122 IKLAYCNTILHNN 135
           +K  YC+ IL  N
Sbjct: 644 MKYPYCSLILQEN 656

[Close]
BLAST of MELO3C018304.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+++SP++M G R G+ ++ R  SS SKRK       TV VI   ++  N+ L+AI
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A+W K  R  E  +R +V++QLQ IP+L   D  + M ++ + L  I+ FL +  ++KL 
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

Query: 126 YCNTILHN 134
           YCN +L N
Sbjct: 297 YCNILLQN 304

[Close]
BLAST of MELO3C018304.2 vs. TrEMBL
Match: tr|A0A0A0KFW0|A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 0 

Query: 6   MYNQGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAI 65
           MY+QG+++ P++M+G R  + ++ R  SSGSKRKH G     V+VI   ++  ND L+AI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 66  AEWLKITRHEEDAIRREVIRQLQVIPQLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLA 125
           A W K  R  E  +  EV++QLQ I +L   D V+ M ++   +  I+ FL     +KL 
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLE 120

Query: 126 YCNTILHNN 135
           YC  +L +N
Sbjct: 121 YCRVLLEDN 127

[Close]
BLAST of MELO3C018304.2 vs. TrEMBL
Match: tr|A0A0A0LEB9|A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.7e-09
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 0 

Query: 32  SSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEWLKITRHEEDAIRREVIRQLQVIP 91
           +SS SKRK  G T  T+ +I   +   ND   AI EW  +    +DA   EV++QLQ IP
Sbjct: 3   ASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIP 62

Query: 92  QLSVLDSVQCMMLMIQKLTIIKAFLDLSDDIKLAYCNTILHNN 135
           +LS  D    M  ++  +  +KA  ++S+++KL YC  +L +N
Sbjct: 63  ELSTHDRRCLMWTLMCNVHDMKALWEISNELKLDYCTVMLEDN 105

[Close]
BLAST of MELO3C018304.2 vs. TrEMBL
Match: tr|E5GBS5|E5GBS5_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.8e-08
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 9   QGMNVSPEDMMGARPGRYNDCRLSSSGSKRKHRGWTIMTVNVIHEAIDCTNDLLRAIAEW 68
           +G+N+SP++ M +R GR  D R +SS SKRK  G  I   N+I  A++  ND L  I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 69  LKITRHEEDAIRREVIRQLQVIPQLS 95
             +   +    ++EV+RQLQ I +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

The following BLAST results are available for this feature:
BLAST of MELO3C018304.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34114.11.0e-1736.84retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.12.5e-1639.84PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
KGN46631.13.0e-1438.76hypothetical protein Csa_6G116150 [Cucumis sativus][more]
XP_004148199.29.8e-1348.24PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
KGN58436.11.5e-0836.89hypothetical protein Csa_3G643760 [Cucumis sativus][more]
BLAST of MELO3C018304.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C018304.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C018304.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCB5|E5GCB5_CUCME6.7e-1836.84Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.6e-1639.84uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A0A0KFW0|A0A0A0KFW0_CUCSA2.0e-1438.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G116150 PE=4 SV=1[more]
tr|A0A0A0LEB9|A0A0A0LEB9_CUCSA9.7e-0936.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1[more]
tr|E5GBS5|E5GBS5_CUCME4.8e-0839.53Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018304.2.1MELO3C018304.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018304.2Cucurbita maxima (Rimu)cmamedB746
MELO3C018304.2Cucurbita maxima (Rimu)cmamedB748
MELO3C018304.2Cucurbita moschata (Rifu)cmomedB741
MELO3C018304.2Cucurbita moschata (Rifu)cmomedB743
MELO3C018304.2Cucurbita pepo (Zucchini)cpemedB444
MELO3C018304.2Cucurbita pepo (Zucchini)cpemedB445
MELO3C018304.2Bottle gourd (USVL1VR-Ls)lsimedB298
MELO3C018304.2Watermelon (Charleston Gray)medwcgB066
MELO3C018304.2Silver-seed gourdcarmedB0187
MELO3C018304.2Silver-seed gourdcarmedB0673
MELO3C018304.2Watermelon (97103) v2medwmbB063
MELO3C018304.2Wax gourdmedwgoB086