MELO3C018272 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018272
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosome production factor 2 like
Locationchr10 : 20549698 .. 20551697 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAACTCCCAAGAATCGGAAAGTTAAGCGGGAGCTCGAGAAACGTGCCCCCAAACTTGTAATTTCTTCCAGTCCCCAGTAAATAGTTTCTGTTTGTTGATTAAACGCATGTGATGGAAATGTATATGGGTTTTGGATTATTATTTTTTTCTGCGTTGATGGATTTGGTTATCGATTTGGATATTGTAGGTTGAGACGGGGAAGAAGACGCTAATACTTCATGGAACTAAAACGAGTGGCGTGCTGAATGAAGTACTGACGGAACTTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGTGACGCGTCTTTAGAATTTTTCTCTCTCAAAACTGACTGTAGTATTATCCTGGTGAGTAAAGTTATGAATGCTTAATAATCTAAGTGTACTAGGTTGTTTATTTGCTTAATTTATTGGAGCACTGCAGTGAGTACCTCTTTAAAGTTCGCATTTGATATTTCAACTTAGTTTTCCCATCGAAGGCAATTTGTTTACCTTGCAATCACAACGAATCATTTGATATAAAACTAATTAGAGCCATGCAATGCTTCGCTCAAGGTTTGATTCAGTTGGATGAGTGCTTTTAGTTTTCTTTAAATGGATTATGGAAGAACTTAGCAGTCCTCAAACGGATGAGCGCATTGTAGAAAAACATAGTCATGATTTGCATTATTTTGGGTAAGTTTAGCCGCTAAGAGTTTCGAGAACTCCAGTTCAGGAAGTACACTGCTTTTGTTTATATGCAAACACCGCAAATATCGGCTCTGTTGGGTTCTAGCTTTGTTTATCTTTTCCTTTTGTTATTATGAAATAGTAAACAACTTCTTGCTTCTATGTCTCCAGTTATTTATTGATGTACTTATTGCACCACTTTTGCAGTATGGTTCTCACTCTAAGAAACGACCCAATAACCTTGTCATATGAAGAACCTACAATCAGCATATCTATGACATGGTTGAGGTTGGGATTGAGAATTTCAAGTCAATGCATTCTTTCGCATACGATAAGAAACTAGCTCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTCTTGCTTGATTTATTTCGAGGAGAGGTAAAAACCCTGCAGCTTTAGGTGACTTGAGTGTTACCGTTCAAGATATAGATATAAAAGATATCTATGGTCTCTTGCAGGTTGTAGAGAATTTAAATCTTTCAGGATTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAATCGGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCAATGGATATGGTGATTCGCCGCCACCGACTTCCTACTGATGGCCTAAGGAAAGAAGCCATGAAAACAGCCAAGGATAAGGCTAAGAAGAAGGTTTGATGACTATCTTTTTAATGAATACACCTCATTTTTTCCATTAAGCTGTTTGGTCTAATTTTGATGTTTACTTCTCCCAGGAGAAAAATGTTAGCAAAGATATTATTCAGGGCAAGGTTGGAAGGATATATATTCCTGATCAAAAGGTGTGTGCACATCTCTCCTTCTCTGTTTGTATATCTGTTTTCTTGTTAGAGAATCATGACTGTCAAAGATACCGCAGGGATTGGAAGTGGTTCATGTTATTGAACTTTTCCCTTGCCATGTTTATCACCAAAGTAGCATTTTCATCACAATTTGTAAGTTATTCAAATAATTTGCTTTGCTCAAATTTGACTCGTAGGTTGGAGACATGGCTATAGTCGACAAATCAAAGGGAGTGAAGAGAGAACGGCGTGAAGCAAAAATGAAAAATAGAGATGATGGGCCAGCCTCTAAAAAACCAAAGGAAGATTCTGAAAAACCGGAGGAAAATTTGGAATAGTTCAATTAGTGTAACACTGTTTG

mRNA sequence

AAGAACTCCCAAGAATCGGAAAGTTAAGCGGGAGCTCGAGAAACGTGCCCCCAAACTTGTTGAGACGGGGAAGAAGACGCTAATACTTCATGGAACTAAAACGAGTGGCGTGCTGAATGAAGTACTGACGGAACTTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGTGACGCGTCTTTAGAATTTTTCTCTCTCAAAACTGACTGTAGTATTATCCTGTATGGTTCTCACTCTAAGAAACGACCCAATAACCTTGTCATATGAAGAACCTACAATCAGCATATCTATGACATGGTTGAGGTTGGGATTGAGAATTTCAAGTCAATGCATTCTTTCGCATACGATAAGAAACTAGCTCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTCTTGCTTGATTTATTTCGAGGAGAGGTTGTAGAGAATTTAAATCTTTCAGGATTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAATCGGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCAATGGATATGGTGATTCGCCGCCACCGACTTCCTACTGATGGCCTAAGGAAAGAAGCCATGAAAACAGCCAAGGATAAGGCTAAGAAGAAGGAGAAAAATGTTAGCAAAGATATTATTCAGGGCAAGGTTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGACATGGCTATAGTCGACAAATCAAAGGGAGTGAAGAGAGAACGGCGTGAAGCAAAAATGAAAAATAGAGATGATGGGCCAGCCTCTAAAAAACCAAAGGAAGATTCTGAAAAACCGGAGGAAAATTTGGAATAGTTCAATTAGTGTAACACTGTTTG

Coding sequence (CDS)

ATGGTTGAGGTTGGGATTGAGAATTTCAAGTCAATGCATTCTTTCGCATACGATAAGAAACTAGCTCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTCTTGCTTGATTTATTTCGAGGAGAGGTTGTAGAGAATTTAAATCTTTCAGGATTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAATCGGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCAATGGATATGGTGATTCGCCGCCACCGACTTCCTACTGATGGCCTAAGGAAAGAAGCCATGAAAACAGCCAAGGATAAGGCTAAGAAGAAGGAGAAAAATGTTAGCAAAGATATTATTCAGGGCAAGGTTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGACATGGCTATAGTCGACAAATCAAAGGGAGTGAAGAGAGAACGGCGTGAAGCAAAAATGAAAAATAGAGATGATGGGCCAGCCTCTAAAAAACCAAAGGAAGATTCTGAAAAACCGGAGGAAAATTTGGAATAG

Protein sequence

MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKNRDDGPASKKPKEDSEKPEENLE*
Homology
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BLAST of MELO3C018272 vs. Swiss-Prot
Match: RPF2_ARATH (Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.8e-79
Identity = 143/200 (71.50%), Postives = 171/200 (85.50%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           ++EVGIENFKS+ +F+YDKK AP  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV
Sbjct: 116 LIEVGIENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           +NLNL+GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+VIRR+RLP
Sbjct: 176 DNLNLTGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            D L KEAM+T+KDK KKKEKNV +D + GK G+IY+PDQK+ +M + DKSKG KRER++
Sbjct: 236 NDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKD 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK+K++++   +KK K  SE
Sbjct: 296 AKLKHKEE-TVAKKMKVSSE 314

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BLAST of MELO3C018272 vs. Swiss-Prot
Match: RPF2_ORYSJ (Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 134/200 (67.00%), Postives = 167/200 (83.50%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVG+EN+KS+ S+ YDKKLAP++GSKPF  FIGE FE+VEELKHLKEVLLDLF+GEVV
Sbjct: 117 LVEVGVENYKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVV 176

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNL+G+DRV+VCTAISP  V++ HCALRLK+SG+ +PR+ELVEVGPSMD+V+RRHR P
Sbjct: 177 ENLNLAGVDRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYP 236

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            + L+KEAMKTA D AKK  KNV+KD + GK+G++YIPDQ++  M++ +  KG+KRERRE
Sbjct: 237 VESLKKEAMKTA-DHAKKM-KNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERRE 296

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK KN+D    SKK K + E
Sbjct: 297 AK-KNKDH---SKKQKINPE 310

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BLAST of MELO3C018272 vs. Swiss-Prot
Match: RPF2_HUMAN (Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-28
Identity = 78/198 (39.39%), Postives = 113/198 (57.07%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           M+E+GIENF S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V
Sbjct: 116 MIELGIENFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
            N+ L+GL+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L 
Sbjct: 176 SNIRLAGLEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLA 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           +D L K +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R 
Sbjct: 236 SDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRP 295

Query: 181 AKMKNRDDGPASKKPKED 199
           A+    D    SK+ K++
Sbjct: 296 AERITEDHEKKSKRIKKN 306

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BLAST of MELO3C018272 vs. Swiss-Prot
Match: RPF2_MOUSE (Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-28
Identity = 79/198 (39.90%), Postives = 113/198 (57.07%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           M+E+GIE F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V
Sbjct: 116 MIELGIEKFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
            N+ L+GL+ V   TA++  KV+     L LKKSG   PR+EL E+GPS+D+V+RR  L 
Sbjct: 176 SNVRLAGLEYVLHFTALN-GKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLA 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           +D L K +MK  K    KK KN+S+D      GRI++  Q +  +    K KG+K  +R 
Sbjct: 236 SDDLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLK--KRP 295

Query: 181 AKMKNRDDGPASKKPKED 199
           A+    D G  SK+ K++
Sbjct: 296 AENGVDDQGKKSKRIKKN 306

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BLAST of MELO3C018272 vs. Swiss-Prot
Match: RPF2_BOVIN (Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-28
Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           ++E+GIE F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V
Sbjct: 116 IIELGIEKFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
            N+ L+GL+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L 
Sbjct: 176 SNIRLAGLEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLA 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           +D L K +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K  +R 
Sbjct: 236 SDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRP 295

Query: 181 AKMKNRDDGPASKKPKED 199
           A+ K  D+   SK+ K++
Sbjct: 296 AERKAEDEENKSKRIKKN 306

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BLAST of MELO3C018272 vs. TrEMBL
Match: A0A0A0LAR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G750370 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.0e-109
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           MVEVGIENFKSMHSFAYDKKL+PRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVV
Sbjct: 116 MVEVGIENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP
Sbjct: 176 ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGK+GRIYIPDQKVGDMAIVDKSKGVKRERRE
Sbjct: 236 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSEKPEENLE 208
           AKMKNRDDGPASKKPKEDSEKP+E+ E
Sbjct: 296 AKMKNRDDGPASKKPKEDSEKPKEDSE 322

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BLAST of MELO3C018272 vs. TrEMBL
Match: B9SRG9_RICCO (Brix domain containing protein, putative OS=Ricinus communis GN=RCOM_0383010 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.2e-86
Identity = 159/199 (79.90%), Postives = 178/199 (89.45%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVGIENFKSM SF YDKK AP VGSKPFI F+GEGFE+V+ELKHLKEVLLDL RGE V
Sbjct: 116 LVEVGIENFKSMSSFKYDKKAAPHVGSKPFIAFVGEGFESVDELKHLKEVLLDLLRGEAV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNL+GLDR YVCTA S N+VFLTHCA+RLKKSG+V+PR+EL+EVGPSMD+V+RRHRLP
Sbjct: 176 ENLNLAGLDRAYVCTATSSNRVFLTHCAIRLKKSGTVIPRIELIEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            D LRKEAMKTAKDK KKK KNVS D IQGK+GRIYIPDQK+G+MA+ DKSKGVKRERRE
Sbjct: 236 NDSLRKEAMKTAKDKLKKKIKNVSADAIQGKLGRIYIPDQKIGEMALPDKSKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDS 200
           AKMKN ++  ASKK KEDS
Sbjct: 296 AKMKNGNNEHASKKQKEDS 314

[Close]
BLAST of MELO3C018272 vs. TrEMBL
Match: A0A0D2RBX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G242600 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 5.3e-85
Identity = 159/200 (79.50%), Postives = 182/200 (91.00%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVG+ENFKS+ SF YDKK+APRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVV
Sbjct: 116 LVEVGVENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           EN+NL+GLDR YVCTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+V+RRHRLP
Sbjct: 176 ENINLAGLDRAYVCTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            +GLRKEAMKTAKD+ KKK KNVS D IQG +G+IYIPDQKVG+MA+ +K+KGVKRERRE
Sbjct: 236 NEGLRKEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK K+ ++  ASKK KE+SE
Sbjct: 296 AKNKDANE-HASKKQKEESE 314

[Close]
BLAST of MELO3C018272 vs. TrEMBL
Match: A0A0B0NCP2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11166 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.0e-85
Identity = 158/200 (79.00%), Postives = 181/200 (90.50%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVG+ENFKS+ SF YDKK+APRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVV
Sbjct: 116 LVEVGVENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           EN+NL+GLDR Y+CTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+V+RRHRLP
Sbjct: 176 ENINLAGLDRAYICTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            +GLRKEAMKTAKD+ KKK KNVS D IQG +G+IYIPDQKVG+MA+ +K+KGVKRERRE
Sbjct: 236 NEGLRKEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK K  ++  ASKK KE+SE
Sbjct: 296 AKNKQANE-HASKKQKEESE 314

[Close]
BLAST of MELO3C018272 vs. TrEMBL
Match: W9QQH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013813 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 9.0e-85
Identity = 152/201 (75.62%), Postives = 184/201 (91.54%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVG+ENFK + SF+YDKKLAP+ GSKPFI FIGEGF++VEELKHLKEVLLDL RGEVV
Sbjct: 116 LVEVGVENFKPLESFSYDKKLAPKAGSKPFIAFIGEGFDSVEELKHLKEVLLDLLRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNL+G+DR Y+CTA+SPN+VF THCALRLK+SG++VPRMELVEVGPSMD V+RRHRLP
Sbjct: 176 ENLNLAGVDRAYICTAVSPNRVFFTHCALRLKRSGTIVPRMELVEVGPSMDFVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            + LRKEAMKTAKDKAKKKEKNVSKD+I+GK+G++YIPDQKVG+MA+ +K+KGVKRERRE
Sbjct: 236 NERLRKEAMKTAKDKAKKKEKNVSKDVIEGKIGKVYIPDQKVGEMALPNKAKGVKRERRE 295

Query: 181 AKMKNRDDGP-ASKKPKEDSE 201
           AK+++ +    ASK+ KEDS+
Sbjct: 296 AKLRHGEGNKHASKRQKEDSQ 316

[Close]
BLAST of MELO3C018272 vs. TAIR10
Match: AT3G23620.1 (AT3G23620.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-80
Identity = 143/200 (71.50%), Postives = 171/200 (85.50%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           ++EVGIENFKS+ +F+YDKK AP  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV
Sbjct: 116 LIEVGIENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           +NLNL+GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+VIRR+RLP
Sbjct: 176 DNLNLTGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            D L KEAM+T+KDK KKKEKNV +D + GK G+IY+PDQK+ +M + DKSKG KRER++
Sbjct: 236 NDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKD 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK+K++++   +KK K  SE
Sbjct: 296 AKLKHKEE-TVAKKMKVSSE 314

[Close]
BLAST of MELO3C018272 vs. NCBI nr
Match: gi|659109743|ref|XP_008454852.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 2 homolog [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV
Sbjct: 121 MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 180

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP
Sbjct: 181 ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 240

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE
Sbjct: 241 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 300

Query: 181 AKMKNRDDGPASKKPKEDSEKPEENLE 208
           AKMKNRDDGPASKKPKEDSEKPEENLE
Sbjct: 301 AKMKNRDDGPASKKPKEDSEKPEENLE 327

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BLAST of MELO3C018272 vs. NCBI nr
Match: gi|449440199|ref|XP_004137872.1| (PREDICTED: ribosome production factor 2 homolog [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 5.8e-109
Identity = 201/207 (97.10%), Postives = 205/207 (99.03%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           MVEVGIENFKSMHSFAYDKKL+PRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVV
Sbjct: 116 MVEVGIENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP
Sbjct: 176 ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
           TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGK+GRIYIPDQKVGDMAIVDKSKGVKRERRE
Sbjct: 236 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSEKPEENLE 208
           AKMKNRDDGPASKKPKEDSEKP+E+ E
Sbjct: 296 AKMKNRDDGPASKKPKEDSEKPKEDSE 322

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BLAST of MELO3C018272 vs. NCBI nr
Match: gi|255575371|ref|XP_002528588.1| (PREDICTED: ribosome production factor 2 homolog [Ricinus communis])

HSP 1 Score: 324.7 bits (831), Expect = 1.2e-85
Identity = 159/199 (79.90%), Postives = 178/199 (89.45%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVGIENFKSM SF YDKK AP VGSKPFI F+GEGFE+V+ELKHLKEVLLDL RGE V
Sbjct: 116 LVEVGIENFKSMSSFKYDKKAAPHVGSKPFIAFVGEGFESVDELKHLKEVLLDLLRGEAV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNL+GLDR YVCTA S N+VFLTHCA+RLKKSG+V+PR+EL+EVGPSMD+V+RRHRLP
Sbjct: 176 ENLNLAGLDRAYVCTATSSNRVFLTHCAIRLKKSGTVIPRIELIEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            D LRKEAMKTAKDK KKK KNVS D IQGK+GRIYIPDQK+G+MA+ DKSKGVKRERRE
Sbjct: 236 NDSLRKEAMKTAKDKLKKKIKNVSADAIQGKLGRIYIPDQKIGEMALPDKSKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDS 200
           AKMKN ++  ASKK KEDS
Sbjct: 296 AKMKNGNNEHASKKQKEDS 314

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BLAST of MELO3C018272 vs. NCBI nr
Match: gi|729472537|ref|XP_010527417.1| (PREDICTED: ribosome production factor 2 homolog [Tarenaya hassleriana])

HSP 1 Score: 323.9 bits (829), Expect = 2.0e-85
Identity = 154/200 (77.00%), Postives = 181/200 (90.50%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           ++EVG+ENFKS+ SF YDKK+AP  GSKPFI F+GEGFENV+ELKHLKEVLLDLFRGEVV
Sbjct: 116 LIEVGVENFKSLQSFTYDKKIAPHEGSKPFICFMGEGFENVQELKHLKEVLLDLFRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           ENLNL+G+DR Y+CTA+SPN+VFLTHCALRLKKSG++VPRMELVEVGPSMD+V+RRHRLP
Sbjct: 176 ENLNLAGIDRAYICTAVSPNRVFLTHCALRLKKSGTIVPRMELVEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            + L KEAMKTAKDK KKK  NVS+D +QGK+G+IYIPDQK+G+M + +K+KGVKRERRE
Sbjct: 236 NESLMKEAMKTAKDKPKKKVYNVSQDAVQGKIGKIYIPDQKLGEMVLPNKAKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK K R+DGPASKK K DSE
Sbjct: 296 AKKKQREDGPASKKQK-DSE 314

[Close]
BLAST of MELO3C018272 vs. NCBI nr
Match: gi|823136865|ref|XP_012468205.1| (PREDICTED: ribosome production factor 2 homolog [Gossypium raimondii])

HSP 1 Score: 322.0 bits (824), Expect = 7.6e-85
Identity = 159/200 (79.50%), Postives = 182/200 (91.00%), Query Frame = 1 

Query: 1   MVEVGIENFKSMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVV 60
           +VEVG+ENFKS+ SF YDKK+APRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVV
Sbjct: 116 LVEVGVENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVV 175

Query: 61  ENLNLSGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLP 120
           EN+NL+GLDR YVCTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+V+RRHRLP
Sbjct: 176 ENINLAGLDRAYVCTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLP 235

Query: 121 TDGLRKEAMKTAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 180
            +GLRKEAMKTAKD+ KKK KNVS D IQG +G+IYIPDQKVG+MA+ +K+KGVKRERRE
Sbjct: 236 NEGLRKEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

Query: 181 AKMKNRDDGPASKKPKEDSE 201
           AK K+ ++  ASKK KE+SE
Sbjct: 296 AKNKDANE-HASKKQKEESE 314

The following BLAST results are available for this feature:
BLAST of MELO3C018272 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPF2_ARATH2.8e-7971.50Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 S... [more]
RPF2_ORYSJ1.4e-7067.00Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g051... [more]
RPF2_HUMAN2.9e-2839.39Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2[more]
RPF2_MOUSE2.9e-2839.90Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2[more]
RPF2_BOVIN5.0e-2838.89Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1[more]
BLAST of MELO3C018272 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAR1_CUCSA4.0e-10997.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G750370 PE=4 SV=1[more]
B9SRG9_RICCO8.2e-8679.90Brix domain containing protein, putative OS=Ricinus communis GN=RCOM_0383010 PE=... [more]
A0A0D2RBX2_GOSRA5.3e-8579.50Uncharacterized protein OS=Gossypium raimondii GN=B456_002G242600 PE=4 SV=1[more]
A0A0B0NCP2_GOSAR9.0e-8579.00Uncharacterized protein OS=Gossypium arboreum GN=F383_11166 PE=4 SV=1[more]
W9QQH6_9ROSA9.0e-8575.62Uncharacterized protein OS=Morus notabilis GN=L484_013813 PE=4 SV=1[more]
BLAST of MELO3C018272 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23620.11.6e-8071.50 Ribosomal RNA processing Brix domain protein[more]
BLAST of MELO3C018272 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109743|ref|XP_008454852.1|1.2e-111100.00PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 2 homolog [Cucumis me... [more]
gi|449440199|ref|XP_004137872.1|5.8e-10997.10PREDICTED: ribosome production factor 2 homolog [Cucumis sativus][more]
gi|255575371|ref|XP_002528588.1|1.2e-8579.90PREDICTED: ribosome production factor 2 homolog [Ricinus communis][more]
gi|729472537|ref|XP_010527417.1|2.0e-8577.00PREDICTED: ribosome production factor 2 homolog [Tarenaya hassleriana][more]
gi|823136865|ref|XP_012468205.1|7.6e-8579.50PREDICTED: ribosome production factor 2 homolog [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001510 RNA methylation
cellular_component GO:0005730 nucleolus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018272T1MELO3C018272T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainPFAMPF04427Brixcoord: 1..116
score: 2.9
IPR007109Brix domainPROFILEPS50833BRIXcoord: 1..123
score: 13
NoneNo IPR availablePANTHERPTHR12728BRIX DOMAIN CONTAINING PROTEINcoord: 1..188
score: 4.1
NoneNo IPR availablePANTHERPTHR12728:SF0RIBOSOME PRODUCTION FACTOR 2 HOMOLOGcoord: 1..188
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018272Wax gourdmewgoB085
MELO3C018272Cucurbita maxima (Rimu)cmameB659
MELO3C018272Cucurbita maxima (Rimu)cmameB660
MELO3C018272Cucurbita moschata (Rifu)cmomeB651
MELO3C018272Wild cucumber (PI 183967)cpimeB377
MELO3C018272Cucumber (Chinese Long) v2cumeB383
MELO3C018272Watermelon (Charleston Gray)mewcgB068
MELO3C018272Watermelon (97103) v1mewmB059
MELO3C018272Cucurbita pepo (Zucchini)cpemeB383
MELO3C018272Cucurbita pepo (Zucchini)cpemeB384
MELO3C018272Bottle gourd (USVL1VR-Ls)lsimeB284
MELO3C018272Cucumber (Gy14) v2cgybmeB326
MELO3C018272Silver-seed gourdcarmeB0183
MELO3C018272Silver-seed gourdcarmeB0662
MELO3C018272Cucumber (Chinese Long) v3cucmeB387
MELO3C018272Watermelon (97103) v2mewmbB067