MELO3C018253.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018253.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr04 : 7476766 .. 7477113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

mRNA sequence

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

Coding sequence (CDS)

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

Protein sequence

MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHLDE

Homology

[Close]

BLAST of MELO3C018253.2 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 54  SAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHL 113
           S  +LD+LIKIEK LL FN  LP+FLY PIKALKW+K +T E +V  D+V++ YATK+H 
Sbjct: 2   SVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

Query: 114 DE 116
            E
Sbjct: 62  KE 63

[Close]

BLAST of MELO3C018253.2 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 47/114 (41.23%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   MEEFSREIKRMSPLEPRLRPKEV--LGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDL 60
           +EE SREI+RMSP E    P ++            K ++K GTSK    QKG KK     
Sbjct: 82  VEELSREIERMSPTE---SPGQIXXXXXXXXXXXXKRQTKAGTSK----QKGGKKG---- 141

Query: 61  DKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYH 113
                    LL FN  LP+FL+  IKALKW+K    E  V LD+V + YA K+H
Sbjct: 142 ---------LLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFH 175

[Close]

BLAST of MELO3C018253.2 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-05
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 34 KSKSKVGTSKPN--DVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKD 93
          + K KV   +P+   ++KG      +LDKLIKIEK LLPF   LP+FL  PIKA KWKK 
Sbjct: 11 RKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKF 70

Query: 94 YTGEIE 98
          +  E E
Sbjct: 71 FIVEGE 76

[Close]

BLAST of MELO3C018253.2 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +E+F  E +R SPL+PR  PKE   LV+  +PKK K + GTS+  DV++   +SA++L K
Sbjct: 91  VEKFGEEFERTSPLKPRSWPKE-FKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHK 150

Query: 61  LIKIEK 67
           LIK EK
Sbjct: 151 LIKTEK 155

[Close]

BLAST of MELO3C018253.2 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.4e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 54  SAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHL 113
           S  +LD+LIKIEK LL FN  LP+FLY PIKALKW+K +T E +V  D+V++ YATK+H 
Sbjct: 2   SVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

Query: 114 DE 116
            E
Sbjct: 62  KE 63

[Close]

BLAST of MELO3C018253.2 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 47/114 (41.23%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   MEEFSREIKRMSPLEPRLRPKEV--LGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDL 60
           +EE SREI+RMSP E    P ++            K ++K GTSK    QKG KK     
Sbjct: 82  VEELSREIERMSPTE---SPGQIXXXXXXXXXXXXKRQTKAGTSK----QKGGKKG---- 141

Query: 61  DKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYH 113
                    LL FN  LP+FL+  IKALKW+K    E  V LD+V + YA K+H
Sbjct: 142 ---------LLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFH 175

[Close]

BLAST of MELO3C018253.2 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 34 KSKSKVGTSKPN--DVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKD 93
          + K KV   +P+   ++KG      +LDKLIKIEK LLPF   LP+FL  PIKA KWKK 
Sbjct: 11 RKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKF 70

Query: 94 YTGEIE 98
          +  E E
Sbjct: 71 FIVEGE 76

[Close]

BLAST of MELO3C018253.2 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-05
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +E+F  E +R SPL+PR  PKE   LV+  +PKK K + GTS+  DV++   +SA++L K
Sbjct: 91  VEKFGEEFERTSPLKPRSWPKE-FKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHK 150

Query: 61  LIKIEK 67
           LIK EK
Sbjct: 151 LIKTEK 155

The following BLAST results are available for this feature:

BLAST of MELO3C018253.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64973.1	1.4e-12	59.68	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
KGN57764.1	1.8e-07	41.23	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
KGN53624.1	6.4e-05	50.00	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]
KGN49573.1	1.4e-04	48.48	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]

BLAST of MELO3C018253.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C018253.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C018253.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT82\|A0A0A0LT82_CUCSA	9.4e-13	59.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1	[more]
tr\|A0A0A0L9V9\|A0A0A0L9V9_CUCSA	1.2e-07	41.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1	[more]
tr\|A0A0A0KXQ2\|A0A0A0KXQ2_CUCSA	4.2e-05	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1	[more]
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	9.4e-05	48.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018253.2.1	MELO3C018253.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..54

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018253.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C018253.2	Cucumber (Gy14) v1	cgymedB560
MELO3C018253.2	Cucurbita maxima (Rimu)	cmamedB031
MELO3C018253.2	Cucurbita maxima (Rimu)	cmamedB487
MELO3C018253.2	Cucurbita moschata (Rifu)	cmomedB020
MELO3C018253.2	Cucurbita moschata (Rifu)	cmomedB474
MELO3C018253.2	Cucurbita pepo (Zucchini)	cpemedB859
MELO3C018253.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C018253.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C018253.2	Bottle gourd (USVL1VR-Ls)	lsimedB325
MELO3C018253.2	Watermelon (Charleston Gray)	medwcgB325
MELO3C018253.2	Watermelon (97103) v1	medwmB364
MELO3C018253.2	Cucumber (Chinese Long) v3	cucmedB212
MELO3C018253.2	Watermelon (97103) v2	medwmbB319
MELO3C018253.2	Wax gourd	medwgoB438