MELO3C018253 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018253
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Argininosuccinate lyase
Location	chr4 : 7476590 .. 7476937 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

mRNA sequence

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

Coding sequence (CDS)

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGCCAAGGCTGAGGCCTAAAGAAGTACTAGGGCTTGTTAACGTTCAACGCCCAAAGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGAAGAGTGCCGAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACCTAACTTTCTCTATGGACCTATCAAGGCTCTGAAATGGAAAAAAGATTACACAGGTGAGATAGAAGTAAGCCTAGATATAGTAAACATATTATATGCGACGAAATACCATCTCGATGAATGA

Protein sequence

MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHLDE*

Homology

[Close]

BLAST of MELO3C018253 vs. TrEMBL
Match: A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 54  SAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHL 113
           S  +LD+LIKIEK LL FN  LP+FLY PIKALKW+K +T E +V  D+V++ YATK+H 
Sbjct: 2   SVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

Query: 114 DE 116
            E
Sbjct: 62  KE 63

[Close]

BLAST of MELO3C018253 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +EE SREI+RMSP E   + ++  GL++ +   K ++K GTSK    QKG KK       
Sbjct: 82  VEELSREIERMSPTESPGQIEDP-GLLSTKGLLKRQTKAGTSK----QKGGKKG------ 141

Query: 61  LIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYH 113
                  LL FN  LP+FL+  IKALKW+K    E  V LD+V + YA K+H
Sbjct: 142 -------LLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFH 175

[Close]

BLAST of MELO3C018253 vs. TrEMBL
Match: A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +E+F  E +R SPL+PR  PKE   LV+  +PKK K + GTS+  DV++   +SA++L K
Sbjct: 91  VEKFGEEFERTSPLKPRSWPKE-FKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHK 150

Query: 61  LIKIEK 67
           LIK EK
Sbjct: 151 LIKTEK 155

[Close]

BLAST of MELO3C018253 vs. TrEMBL
Match: A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 34 KSKSKVGTSKPN--DVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKD 93
          + K KV   +P+   ++KG      +LDKLIKIEK LLPF   LP+FL  PIKA KWKK 
Sbjct: 11 RKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKF 70

Query: 94 YTGEIE 98
          +  E E
Sbjct: 71 FIVEGE 76

[Close]

BLAST of MELO3C018253 vs. NCBI nr
Match: gi|700209877|gb|KGN64973.1| (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 54  SAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYHL 113
           S  +LD+LIKIEK LL FN  LP+FLY PIKALKW+K +T E +V  D+V++ YATK+H 
Sbjct: 2   SVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 61

Query: 114 DE 116
            E
Sbjct: 62  KE 63

[Close]

BLAST of MELO3C018253 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-10
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +EE SREI+RMSP E   + ++  GL++ +   K ++K GTSK    QKG KK       
Sbjct: 82  VEELSREIERMSPTESPGQIEDP-GLLSTKGLLKRQTKAGTSK----QKGGKKG------ 141

Query: 61  LIKIEKRLLPFNDHLPNFLYGPIKALKWKKDYTGEIEVSLDIVNILYATKYH 113
                  LL FN  LP+FL+  IKALKW+K    E  V LD+V + YA K+H
Sbjct: 142 -------LLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFH 175

[Close]

BLAST of MELO3C018253 vs. NCBI nr
Match: gi|700194396|gb|KGN49573.1| (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 1   MEEFSREIKRMSPLEPRLRPKEVLGLVNVQRPKKSKSKVGTSKPNDVQKGSKKSAEDLDK 60
           +E+F  E +R SPL+PR  PKE   LV+  +PKK K + GTS+  DV++   +SA++L K
Sbjct: 91  VEKFGEEFERTSPLKPRSWPKE-FKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHK 150

Query: 61  LIKIEK 67
           LIK EK
Sbjct: 151 LIKTEK 155

[Close]

BLAST of MELO3C018253 vs. NCBI nr
Match: gi|700198466|gb|KGN53624.1| (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-06
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 34 KSKSKVGTSKPN--DVQKGSKKSAEDLDKLIKIEKRLLPFNDHLPNFLYGPIKALKWKKD 93
          + K KV   +P+   ++KG      +LDKLIKIEK LLPF   LP+FL  PIKA KWKK 
Sbjct: 11 RKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKF 70

Query: 94 YTGEIE 98
          +  E E
Sbjct: 71 FIVEGE 76

The following BLAST results are available for this feature:

BLAST of MELO3C018253 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT82_CUCSA	1.5e-12	59.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1	[more]
A0A0A0L9V9_CUCSA	1.4e-10	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1	[more]
A0A0A0KJ65_CUCSA	5.5e-07	48.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1	[more]
A0A0A0KXQ2_CUCSA	6.1e-06	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1	[more]

BLAST of MELO3C018253 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209877\|gb\|KGN64973.1\|	2.1e-12	59.68	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
gi\|700202631\|gb\|KGN57764.1\|	2.0e-10	42.86	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
gi\|700194396\|gb\|KGN49573.1\|	7.9e-07	48.48	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]
gi\|700198466\|gb\|KGN53624.1\|	8.7e-06	50.00	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018253T1	MELO3C018253T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018253	Watermelon (97103) v2	mewmbB332
MELO3C018253	Wax gourd	mewgoB436
MELO3C018253	Cucumber (Gy14) v1	cgymeB559
MELO3C018253	Cucurbita maxima (Rimu)	cmameB032
MELO3C018253	Cucurbita maxima (Rimu)	cmameB424
MELO3C018253	Cucurbita moschata (Rifu)	cmomeB021
MELO3C018253	Cucurbita moschata (Rifu)	cmomeB414
MELO3C018253	Wild cucumber (PI 183967)	cpimeB215
MELO3C018253	Cucumber (Chinese Long) v2	cumeB222
MELO3C018253	Watermelon (Charleston Gray)	mewcgB331
MELO3C018253	Watermelon (97103) v1	mewmB368
MELO3C018253	Cucurbita pepo (Zucchini)	cpemeB726
MELO3C018253	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C018253	Cucumber (Gy14) v2	cgybmeB185
MELO3C018253	Silver-seed gourd	carmeB0106
MELO3C018253	Cucumber (Chinese Long) v3	cucmeB219